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SW_5_UNK

In projects: SW_5  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 32.67 Longest contig: 221.74 Kbp Bin length: 59.88 Mbp GC content: 60.84 %
Contigs count: 21986 Features count: 79389 rRNAs count: 15 tRNAs count: 806

Genome completeness

megabin RP 47 / 55 MC: 39 BSCG 41 / 51 MC: 33 ASCG 38 / 38 MC: 37
Displaying items 301-350 of 21986 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_5_scaffold_1168 17 7166 bp 64.53 11.99 89.25
sw_5_scaffold_3583
Class: Halobacteria (81.25%)
16 13973 bp 67.26 131.41 77.49
sw_5_scaffold_448 16 12093 bp 41.96 8.84 90.55
sw_5_scaffold_1564 16 13159 bp 45.50 55.76 94.09
sw_5_scaffold_537
Class: Halobacteria (93.75%)
16 17481 bp 59.60 17.18 83.80
sw_5_scaffold_274
Class: Halobacteria (50%)
16 16778 bp 60.00 97.16 75.97
sw_5_scaffold_1102 16 12830 bp 56.69 8.11 82.59
sw_5_scaffold_1195
Order: Halobacteriales (56.25%)
16 9739 bp 64.01 24.23 78.40
sw_5_scaffold_793 16 9640 bp 51.20 9.38 94.11
sw_5_scaffold_1751 16 10512 bp 41.75 8.72 76.74
sw_5_scaffold_2519 16 4668 bp 43.55 8.42 88.43
sw_5_scaffold_771
Class: Halobacteria (68.75%)
16 17936 bp 69.68 28.38 91.89
sw_5_scaffold_2638 16 12594 bp 52.91 8.19 71.87
sw_5_scaffold_1313 16 8771 bp 64.14 18.03 94.03
sw_5_scaffold_634
Class: Halobacteria (93.75%)
16 12923 bp 61.56 67.70 85.41
sw_5_scaffold_5422
Order: Halobacteriales (50%)
16 12636 bp 61.43 98.59 90.24
sw_5_scaffold_682 16 9742 bp 41.33 8.82 86.07
sw_5_scaffold_913
Class: Halobacteria (50%)
16 15184 bp 59.91 12.28 88.71
sw_5_scaffold_8219 16 4368 bp 61.17 15.73 64.03
sw_5_scaffold_350
Domain: Bacteria (68.75%)
16 13741 bp 40.21 10.60 88.53
sw_5_scaffold_4565
Class: Halobacteria (68.75%)
16 8748 bp 64.03 62.96 64.71
sw_5_scaffold_892
Order: Haloferacales (56.25%)
16 11905 bp 64.43 16.88 86.06
sw_5_scaffold_1295
Class: Halobacteria (62.5%)
16 11047 bp 64.80 112.26 91.19
sw_5_scaffold_2556 16 8354 bp 62.32 13.06 97.57
sw_5_scaffold_1090 16 7897 bp 50.15 10.92 76.37
sw_5_scaffold_1784
Genus: Halococcus (50%)
16 12264 bp 57.27 33.44 70.30
sw_5_scaffold_1322
Order: Halobacteriales (56.25%)
16 12018 bp 64.01 48.44 89.56
sw_5_scaffold_1624
Class: Halobacteria (56.25%)
16 8700 bp 62.84 17.67 73.21
sw_5_scaffold_3095 16 17283 bp 71.20 16.91 71.24
sw_5_scaffold_874
Class: Halobacteria (56.25%)
16 8450 bp 55.44 12.08 81.23
sw_5_scaffold_422
Class: Halobacteria (62.5%)
16 18866 bp 43.51 8.37 77.55
sw_5_scaffold_506
Order: Halobacteriales (56.25%)
16 11383 bp 63.68 22.31 82.48
sw_5_scaffold_1626
Class: Halobacteria (56.25%)
16 8063 bp 54.22 87.69 62.21
sw_5_scaffold_1034 16 11981 bp 46.92 8.13 93.77
sw_5_scaffold_4436
Order: Halobacteriales (75%)
16 13925 bp 70.59 19.58 85.59
sw_5_scaffold_1605
Domain: Bacteria (50%)
16 17005 bp 45.30 8.64 74.55
sw_5_scaffold_649
Order: Halobacteriales (50%)
16 14164 bp 67.84 54.17 89.47
sw_5_scaffold_1330
Class: Halobacteria (80%)
15 12919 bp 63.78 104.52 69.38
sw_5_scaffold_905
Class: Halobacteria (73.33%)
15 12587 bp 63.89 17.25 84.67
sw_5_scaffold_1354
Class: Halobacteria (66.67%)
15 14034 bp 70.13 84.12 86.49
sw_5_scaffold_1087 15 14692 bp 52.67 7.92 77.39
sw_5_scaffold_837
Order: Halobacteriales (53.33%)
15 9565 bp 56.01 17.19 80.86
sw_5_scaffold_1875 15 10162 bp 41.89 8.15 95.69
sw_5_scaffold_561 15 10912 bp 59.39 31.36 45.09
sw_5_scaffold_3453 15 6313 bp 62.90 14.89 78.55
sw_5_scaffold_539
Class: Halobacteria (86.67%)
15 15249 bp 61.47 83.70 92.19
sw_5_scaffold_1089 15 7426 bp 65.01 53.07 89.56
sw_5_scaffold_2429 15 12031 bp 55.83 12.58 87.72
sw_5_scaffold_332
Class: Halobacteria (60%)
15 14077 bp 59.00 23.25 88.02
sw_5_scaffold_452
Class: Halobacteria (80%)
15 13749 bp 61.95 43.06 72.99
Displaying items 301-350 of 21986 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.