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SW_6_UNK

In projects: SW_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 22.55 Longest contig: 253.36 Kbp Bin length: 44.06 Mbp GC content: 60.59 %
Contigs count: 15674 Features count: 56776 rRNAs count: 17 tRNAs count: 494

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 50 / 51 MC: 38 ASCG 38 / 38 MC: 38
Displaying items 101-150 of 15674 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_6_scaffold_225
Class: Halobacteria (80%)
25 18711 bp 58.10 89.29 80.58
sw_6_scaffold_308 24 24654 bp 55.01 9.02 77.04
sw_6_scaffold_1135 24 15175 bp 52.82 9.66 58.87
sw_6_scaffold_1713 24 20242 bp 54.24 8.70 66.89
sw_6_scaffold_1416 24 11239 bp 43.79 83.40 84.12
sw_6_scaffold_103
Order: Halobacteriales (62.5%)
24 21530 bp 60.92 23.70 67.61
sw_6_scaffold_490 24 20264 bp 53.71 9.22 75.95
sw_6_scaffold_273 24 19782 bp 45.46 9.64 67.20
sw_6_scaffold_214
Species: Salinibacter ruber (86.96%)
23 27545 bp 65.48 50.78 83.25
sw_6_scaffold_617
Domain: Bacteria (69.57%)
23 14951 bp 54.26 30.95 75.73
sw_6_scaffold_481 23 19156 bp 61.16 10.64 82.49
sw_6_scaffold_1738 23 21041 bp 51.63 9.24 59.50
sw_6_scaffold_1162
Domain: Bacteria (56.52%)
23 16494 bp 64.42 42.87 74.84
sw_6_scaffold_375
Domain: Bacteria (56.52%)
23 26159 bp 41.27 9.35 89.60
sw_6_scaffold_1659 23 8637 bp 63.82 11.59 89.75
sw_6_scaffold_1178 23 14138 bp 55.61 8.47 70.66
sw_6_scaffold_82 23 24163 bp 45.40 75.23 97.35
sw_6_scaffold_570 22 21952 bp 56.71 9.06 62.03
sw_6_scaffold_919 22 12828 bp 54.65 9.13 77.57
sw_6_scaffold_551 22 31765 bp 53.59 8.57 88.25
sw_6_scaffold_195
Class: Halobacteria (59.09%)
22 16920 bp 64.56 84.59 82.67
sw_6_scaffold_1210 22 19210 bp 55.35 8.78 66.07
sw_6_scaffold_392 22 12219 bp 45.34 9.98 82.10
sw_6_scaffold_784 22 16260 bp 47.07 12.64 66.66
sw_6_scaffold_255 22 18680 bp 57.16 10.14 77.15
sw_6_scaffold_1965 22 14993 bp 59.71 10.05 91.82
sw_6_scaffold_604 22 20521 bp 54.96 9.23 68.40
sw_6_scaffold_791 22 21691 bp 56.47 8.47 80.54
sw_6_scaffold_26
Phylum: Bacteroidetes (54.55%)
22 37542 bp 63.76 40.33 87.15
sw_6_scaffold_449 22 28870 bp 53.41 8.60 60.84
sw_6_scaffold_1110
Order: Halobacteriales (54.55%)
22 14260 bp 63.42 19.45 80.92
sw_6_scaffold_237 22 19314 bp 54.83 9.01 60.89
sw_6_scaffold_685
Class: Halobacteria (66.67%)
21 17385 bp 64.15 12.35 66.95
sw_6_scaffold_1620 21 7831 bp 48.04 7.10 91.71
sw_6_scaffold_459
Phylum: Parcubacteria (66.67%)
21 22783 bp 44.05 9.33 90.75
sw_6_scaffold_1394 21 19557 bp 55.56 8.76 72.57
sw_6_scaffold_1373
Order: Halobacteriales (57.14%)
21 15885 bp 61.96 14.40 90.41
sw_6_scaffold_1558
Class: Halobacteria (80.95%)
21 15874 bp 65.20 18.75 78.60
sw_6_scaffold_1213 21 17532 bp 59.56 56.57 70.40
sw_6_scaffold_301
Class: Halobacteria (90.48%)
21 15073 bp 66.08 105.10 86.16
sw_6_scaffold_177 21 17708 bp 46.03 78.82 90.88
sw_6_scaffold_233
Order: Halobacteriales (61.9%)
21 17441 bp 67.11 102.25 90.67
sw_6_scaffold_883
Order: Halobacteriales (52.38%)
21 18459 bp 58.27 18.64 84.48
sw_6_scaffold_654
Domain: Bacteria (95.24%)
21 32921 bp 61.41 39.00 89.48
sw_6_scaffold_470
Domain: Bacteria (76.19%)
21 19037 bp 62.56 37.11 83.19
sw_6_scaffold_212
Class: Halobacteria (52.38%)
21 16325 bp 56.58 31.74 89.53
sw_6_scaffold_1931 20 17497 bp 56.10 8.62 77.16
sw_6_scaffold_295
Species: Salinibacter ruber (70%)
20 21303 bp 64.78 51.66 86.03
sw_6_scaffold_668 20 14314 bp 55.09 8.76 78.07
sw_6_scaffold_313
Order: Halobacteriales (55%)
20 14074 bp 64.64 15.26 80.90
Displaying items 101-150 of 15674 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.