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SW_7_Halobacteria_71_33

In projects: SW_7  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_7_UNK

Properties

Avg. coverage: 33.29 Longest contig: 41.25 Kbp Bin length: 1.75 Mbp GC content: 70.95 %
Contigs count: 142 Features count: 1861 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 34 / 55 MC: 6 BSCG 25 / 51 MC: 3 ASCG 37 / 38 MC: 2
Displaying items 1-50 of 142 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_7_scaffold_5139
Class: Halobacteria (66.67%)
3 3034 bp 71.46 32.37 96.61
sw_7_scaffold_1977
Order: Natrialbales (50%)
6 5489 bp 73.13 34.69 94.55
sw_7_scaffold_2710
Order: Halobacteriales (75%)
4 4575 bp 69.31 34.47 93.90
sw_7_scaffold_5696
Order: Natrialbales (50%)
6 4855 bp 70.75 33.35 93.49
sw_7_scaffold_1297
Class: Halobacteria (71.43%)
14 13790 bp 68.80 38.95 93.49
sw_7_scaffold_9570
Order: Halobacteriales (80%)
5 3310 bp 69.46 31.12 93.26
sw_7_scaffold_1317
Order: Halobacteriales (66.67%)
9 9016 bp 70.87 30.49 92.84
sw_7_scaffold_2215
Order: Halobacteriales (50%)
12 10831 bp 69.30 33.96 92.65
sw_7_scaffold_329
Class: Halobacteria (100%)
16 15333 bp 72.09 33.41 92.57
sw_7_scaffold_290
Class: Halobacteria (62.79%)
43 22799 bp 68.43 28.37 92.24
sw_7_scaffold_3932
Class: Halobacteria (100%)
8 7112 bp 72.82 39.72 92.21
sw_7_scaffold_3673
Order: Halobacteriales (71.43%)
7 6113 bp 71.70 30.98 92.16
sw_7_scaffold_2900
Class: Halobacteria (71.43%)
7 5256 bp 70.76 30.38 92.12
sw_7_scaffold_898
Class: Halobacteria (72.73%)
11 8604 bp 71.76 35.09 91.95
sw_7_scaffold_458
Order: Halobacteriales (50%)
18 17115 bp 72.68 34.83 91.41
sw_7_scaffold_2469
Class: Halobacteria (83.33%)
12 11811 bp 70.81 36.29 91.06
sw_7_scaffold_1172
Class: Halobacteria (75%)
8 7358 bp 73.06 39.44 91.04
sw_7_scaffold_190
Order: Halobacteriales (50%)
34 36919 bp 70.78 33.09 90.99
sw_7_scaffold_1363
Class: Halobacteria (83.33%)
12 13971 bp 71.31 32.93 90.53
sw_7_scaffold_1187
Class: Halobacteria (83.33%)
24 20683 bp 72.67 33.59 90.37
sw_7_scaffold_1200
Order: Halobacteriales (66.67%)
9 13006 bp 70.90 36.50 90.26
sw_7_scaffold_904
Class: Halobacteria (100%)
9 8571 bp 72.78 36.23 90.16
sw_7_scaffold_2529
Order: Halobacteriales (66.67%)
9 6671 bp 70.33 37.45 90.08
sw_7_scaffold_765
Order: Halobacteriales (50%)
12 9306 bp 70.84 33.82 89.78
sw_7_scaffold_2556
Class: Halobacteria (81.82%)
11 7337 bp 70.86 30.43 89.55
sw_7_scaffold_1389
Class: Halobacteria (93.33%)
15 15796 bp 69.16 31.10 89.51
sw_7_scaffold_1718
Order: Halobacteriales (54.55%)
22 21835 bp 70.00 32.17 89.43
sw_7_scaffold_474
Class: Halobacteria (77.78%)
36 29682 bp 70.45 32.97 89.32
sw_7_scaffold_2641
Order: Halobacteriales (60%)
10 10116 bp 70.43 31.97 89.29
sw_7_scaffold_210
Class: Halobacteria (90.48%)
42 36554 bp 72.05 33.71 89.28
sw_7_scaffold_10524
Order: Natrialbales (50%)
4 3907 bp 68.01 30.97 89.22
sw_7_scaffold_1689
Class: Halobacteria (93.33%)
15 18312 bp 69.34 36.15 89.11
sw_7_scaffold_5818
Class: Halobacteria (66.67%)
6 5826 bp 71.97 33.45 88.98
sw_7_scaffold_2328
Class: Halobacteria (88.24%)
17 17814 bp 72.24 36.10 88.83
sw_7_scaffold_3496
Order: Halobacteriales (66.67%)
9 7029 bp 70.18 31.24 88.82
sw_7_scaffold_6119
Class: Halobacteria (60%)
10 7249 bp 72.41 31.80 88.81
sw_7_scaffold_2305
Order: Halobacteriales (50%)
10 10542 bp 72.68 36.53 88.65
sw_7_scaffold_1440
Class: Halobacteria (85.71%)
14 13941 bp 71.34 35.98 88.62
sw_7_scaffold_624
Order: Halobacteriales (50%)
12 12906 bp 70.30 36.77 88.42
sw_7_scaffold_314
Class: Halobacteria (76.47%)
17 16576 bp 71.71 36.02 88.38
sw_7_scaffold_5075
Class: Halobacteria (68.75%)
16 15416 bp 71.37 30.53 88.37
sw_7_scaffold_696
Order: Halobacteriales (76.92%)
13 15056 bp 73.00 34.66 88.29
sw_7_scaffold_4651
Class: Halobacteria (100%)
3 3973 bp 70.60 33.48 88.20
sw_7_scaffold_1831
Class: Halobacteria (81.25%)
16 9592 bp 72.57 32.91 88.04
sw_7_scaffold_3391
Class: Halobacteria (80%)
10 7354 bp 71.28 33.08 87.99
sw_7_scaffold_3128
Order: Halobacteriales (58.33%)
12 9945 bp 72.23 32.46 87.93
sw_7_scaffold_1030
Order: Halobacteriales (50%)
16 15803 bp 71.95 34.35 87.82
sw_7_scaffold_782
Class: Halobacteria (86.36%)
22 25874 bp 68.76 30.37 87.81
sw_7_scaffold_2049
Class: Halobacteria (69.57%)
23 17480 bp 71.90 34.09 87.80
sw_7_scaffold_7135
Order: Natrialbales (66.67%)
3 4146 bp 70.02 35.26 87.70
Displaying items 1-50 of 142 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.