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ACD1_56

Alias: ACDUNK_1203.55625.88

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD1_56_1

Not on your lists

comp(149..1372)
DNA (1224bp) protein (408aa)
ATP-dependent RNA helicase RhlE
DEAD/DEAH box helicase-like protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1F5_9BACT (db=UNIREF evalue=1.0e-85 bit_score=320.0 identity=42.97 coverage=91.1764705882353)
seg (db=Seg db_id=seg from=392 to=405)
ACD1_56_2
Rothia mucilaginosa, Rothia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2293..3528)
DNA (1236bp) protein (412aa)
Glycine--tRNA ligase n=2 Tax=Sphingobacterium spiritivorum RepID=C2FTM1_9SPHI (db=UNIREF evalue=1.0e-110 bit_score=404.0 identity=48.46 coverage=97.3300970873786)
putative transcriptional regulator
glyS_dimeric: glycyl-tRNA synthetase (db=HMMTigr db_id=TIGR00389 from=1 to=410 evalue=2.8e-111 interpro_id=IPR002315 interpro_description=Glycyl-tRNA synthetase, alpha2 dimer GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
no description (db=Gene3D db_id=G3DSA:3.30.930.10 from=1 to=293 evalue=6.7e-74)
ACD1_56_3
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(4329..5945)
DNA (1617bp) protein (539aa)
seg (db=Seg db_id=seg from=40 to=55)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=7.0)
ACD1_56_4
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(6400..6825)
DNA (426bp) protein (142aa)
NUDIX hydrolase (db=KEGG evalue=5.0e-09 bit_score=63.2 identity=35.24 coverage=68.3098591549296)
seg (db=Seg db_id=seg from=51 to=65)
seg (db=Seg db_id=seg from=8 to=19)
Nudix (db=superfamily db_id=SSF55811 from=1 to=126 evalue=1.2e-25 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD1_56_5
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(7110..8309)
DNA (1200bp) protein (400aa)
permease of the major facilitator superfamily (db=KEGG evalue=2.0e-68 bit_score=263.0 identity=34.36 coverage=96.25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=113)
ACD1_56_6
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(8503..9084)
DNA (582bp) protein (194aa)
seg (db=Seg db_id=seg from=182 to=193)
seg (db=Seg db_id=seg from=160 to=177)
seg (db=Seg db_id=seg from=131 to=147)
seg (db=Seg db_id=seg from=52 to=67)
ACD1_56_7
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9949..10698)
DNA (750bp) protein (250aa)
Acetyltransferase, GNAT family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R020_9RHOB (db=UNIREF evalue=5.0e-08 bit_score=61.6 identity=25.64 coverage=72.8)
seg (db=Seg db_id=seg from=222 to=233)
ACD1_56_8
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(10874..11554)
DNA (681bp) protein (227aa)
ylfA; hypothetical protein (db=KEGG evalue=7.0e-15 bit_score=84.0 identity=36.36 coverage=64.7577092511013)
seg (db=Seg db_id=seg from=207 to=221)
seg (db=Seg db_id=seg from=21 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=200 to=222)
ACD1_56_9
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11793..12290)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWP4_9RHOB (db=UNIREF evalue=2.0e-19 bit_score=98.2 identity=33.33 coverage=84.3373493975904)
nuclear protein SET (db=KEGG evalue=4.0e-17 bit_score=90.5 identity=36.81 coverage=81.9277108433735)
SET domain (db=superfamily db_id=SSF82199 from=3 to=123 evalue=9.2e-33)
SET DOMAIN PROTEIN (db=HMMPanther db_id=PTHR22884:SF29 from=13 to=125 evalue=3.1e-15)
ACD1_56_10
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(12309..14033)
DNA (1725bp) protein (575aa)
PAS/PAC sensor signal transduction histidine kinase (db=KEGG evalue=4.0e-44 bit_score=183.0 identity=35.94 coverage=45.2173913043478)
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
transmembrane_regions (db=TMHMM db_id=tmhmm from=190 to=212)
transmembrane_regions (db=TMHMM db_id=tmhmm from=223 to=240)
ACD1_56_11

Not on your lists

comp(14042..14809)
DNA (768bp) protein (256aa)
NAD/FAD-binding protein n=1 Tax=uncultured bacterium RepID=B2M0U8_9BACT (db=UNIREF evalue=1.0e-24 bit_score=116.0 identity=34.27 coverage=94.921875)
hypothetical protein (db=KEGG evalue=5.0e-23 bit_score=111.0 identity=36.9 coverage=65.234375)
seg (db=Seg db_id=seg from=24 to=44)
seg (db=Seg db_id=seg from=208 to=222)
ACD1_56_12
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(14806..15420)
DNA (615bp) protein (205aa)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=7 to=188 evalue=7.4e-12 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
Autoind_synth (db=HMMPfam db_id=PF00765 from=55 to=187 evalue=8.0e-08 interpro_id=IPR001690 interpro_description=Autoinducer synthesis protein GO=Biological Process: signal transduction (GO:0007165))
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=7 to=187 evalue=0.00057 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
ACD1_56_13
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(15568..17151)
DNA (1584bp) protein (528aa)
PAS/PAC sensor signal transduction histidine kinase (db=KEGG evalue=3.0e-36 bit_score=156.0 identity=38.24 coverage=44.5075757575758)
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=250 to=272)
transmembrane_regions (db=TMHMM db_id=tmhmm from=171 to=190)
ACD1_56_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17160..17615)
DNA (456bp) protein (152aa)
MutT/nudix family protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BB10_CLOBO (db=UNIREF evalue=9.0e-22 bit_score=105.0 identity=43.18 coverage=84.2105263157895)
MutT/NUDIX family protein (db=KEGG evalue=8.0e-20 bit_score=99.0 identity=42.42 coverage=84.2105263157895)
seg (db=Seg db_id=seg from=65 to=79)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=47 to=68 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
ACD1_56_15
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18093..19292)
DNA (1200bp) protein (400aa)
Radical SAM domain protein n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z891_9NEIS (db=UNIREF evalue=2.0e-20 bit_score=103.0 identity=28.29 coverage=76.25)
radical SAM domain-containing protein (db=KEGG evalue=4.0e-16 bit_score=89.4 identity=27.24 coverage=60.25)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=51 to=345 evalue=9.5e-22)
Radical_SAM (db=HMMPfam db_id=PF04055 from=59 to=200 evalue=1.1e-12 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD1_56_16
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(19324..20496)
DNA (1173bp) protein (391aa)
radical SAM domain-containing protein (db=KEGG evalue=4.0e-14 bit_score=82.8 identity=35.29 coverage=43.4782608695652)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=43 to=324 evalue=2.9e-17)
Radical_SAM (db=HMMPfam db_id=PF04055 from=47 to=147 evalue=6.0e-10 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
radical SAM domain-containing protein alias=ACDUNK_1203.55625.88G0016,ACDUNK_1203.55625.88_16,ACD1_C00056G00016 id=17327 tax=ACD1 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD1_56_17
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20596..21132)
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolase, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZT91_9BACT (db=UNIREF evalue=3.0e-27 bit_score=124.0 identity=40.51 coverage=86.0335195530726)
ADP-ribose pyrophosphatase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] (db=KEGG evalue=3.0e-26 bit_score=121.0 identity=46.2 coverage=87.1508379888268)
seg (db=Seg db_id=seg from=4 to=16)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=79 to=100 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
ACD1_56_18
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(21755..22639)
DNA (885bp) protein (295aa)
possible dTDP-glucose 4,6-dehydratase RfbB (db=KEGG evalue=2.0e-54 bit_score=215.0 identity=37.94 coverage=98.6440677966102)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=2 to=290 evalue=4.4e-63)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=292 evalue=3.8e-62)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=2 to=248 evalue=5.0e-39 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
ACD1_56_19
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(22814..23329)
DNA (516bp) protein (172aa)
DUF218 (db=HMMPfam db_id=PF02698 from=5 to=105 evalue=7.0e-08 interpro_id=IPR003848 interpro_description=Protein of unknown function DUF218)
ACD1_56_20
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(23660..24931)
DNA (1272bp) protein (424aa)
peptidase M16 domain protein (db=KEGG evalue=1.0e-24 bit_score=117.0 identity=23.72 coverage=95.2830188679245)
seg (db=Seg db_id=seg from=163 to=174)
seg (db=Seg db_id=seg from=317 to=328)
METALLOPROTEASE (db=HMMPanther db_id=PTHR11851 from=31 to=415 evalue=1.9e-62)
ACD1_56_21
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(25470..26699)
DNA (1230bp) protein (410aa)
Proline--tRNA ligase n=1 Tax=Turicibacter sp. PC909 RepID=D4W313_9FIRM (db=UNIREF evalue=3.0e-93 bit_score=345.0 identity=42.48 coverage=98.780487804878)
proS; prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15] (db=KEGG evalue=3.0e-77 bit_score=292.0 identity=39.95 coverage=98.2926829268293)
PROLYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11451:SF3 from=38 to=409 evalue=4.4e-142)
TRNA SYNTHETASE-RELATED (db=HMMPanther db_id=PTHR11451 from=38 to=409 evalue=4.4e-142)
ACD1_56_22
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists


comp(27076..27948)
DNA (873bp) protein (291aa)
hydroxymethylbutenyl pyrophosphate reductase; K02945 small subunit ribosomal protein S1; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] (db=KEGG evalue=2.0e-47 bit_score=192.0 identity=36.21 coverage=94.1580756013746)
ispH_lytB: 4-hydroxy-3-methylbut-2-enyl dip (db=HMMTigr db_id=TIGR00216 from=2 to=290 evalue=1.7e-79 interpro_id=IPR003451 interpro_description=LytB protein GO=Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288), Biological Process: oxidation reduction (GO:0055114))
LYTB (db=HMMPfam db_id=PF02401 from=3 to=289 evalue=9.1e-76 interpro_id=IPR003451 interpro_description=LytB protein GO=Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288), Biological Process: oxidation reduction (GO:0055114))
IspH (db=HAMAP db_id=MF_00191 from=1 to=290 evalue=28.781 interpro_id=IPR003451 interpro_description=LytB protein GO=Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway (GO:0019288), Biological Process: oxidation reduction (GO:0055114))
ACD1_56_23
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(28184..28981)
DNA (798bp) protein (266aa)
adenylate/guanylate cyclase (db=KEGG evalue=1.0e-18 bit_score=96.7 identity=27.27 coverage=87.9699248120301)
seg (db=Seg db_id=seg from=148 to=159)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=133 evalue=1.5e-29 interpro_id=IPR011006 interpro_description=CheY-like)
CheY-like (db=superfamily db_id=SSF52172 from=143 to=265 evalue=4.7e-27 interpro_id=IPR011006 interpro_description=CheY-like)
ACD1_56_24
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists


comp(29000..30415)
DNA (1416bp) protein (472aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] (db=KEGG evalue=8.0e-93 bit_score=344.0 identity=58.3 coverage=59.3220338983051)
ASPARTYL/LYSYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594 from=88 to=466 evalue=1.0e-161 interpro_id=IPR018150 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:00
ASPARTYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR22594:SF5 from=88 to=466 evalue=1.0e-161 interpro_id=IPR018153 interpro_description=Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aspartate-tRNA ligase activity (GO:0004815), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: aspartyl-tRNA aminoacyl
tRNA-synt_2 (db=HMMPfam db_id=PF00152 from=119 to=437 evalue=2.5e-107 interpro_id=IPR004364 interpro_description=Aminoacyl-tRNA synthetase, class II (D/K/N) GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
ACD1_56_25
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(30488..31705)
DNA (1218bp) protein (406aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=283 to=305)
transmembrane_regions (db=TMHMM db_id=tmhmm from=359 to=381)
seg (db=Seg db_id=seg from=20 to=32)
seg (db=Seg db_id=seg from=51 to=60)
ACD1_56_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(31729..32442)
DNA (714bp) protein (238aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7X7_9BACT (db=UNIREF evalue=2.0e-27 bit_score=125.0 identity=37.55 coverage=96.218487394958)
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A (db=KEGG evalue=7.0e-26 bit_score=120.0 identity=35.29 coverage=97.8991596638655)
coiled-coil (db=Coil db_id=coil from=80 to=108 evalue=NA)
seg (db=Seg db_id=seg from=81 to=86)
ACD1_56_27
Filifactor alocis, Filifactor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32545..33096)
DNA (552bp) protein (184aa)
Segregation and condensation protein B n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GQI5_9FIRM (db=UNIREF evalue=6.0e-26 bit_score=120.0 identity=37.7 coverage=94.0217391304348)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B (db=KEGG evalue=3.0e-24 bit_score=114.0 identity=38.01 coverage=90.7608695652174)
DUF387 (db=HMMPfam db_id=PF04079 from=13 to=169 evalue=1.8e-41 interpro_id=IPR005234 interpro_description=Chromosome segregation/condensation protein ScpB, prokaryote)
TIGR00281: segregation and condensation pro (db=HMMTigr db_id=TIGR00281 from=9 to=183 evalue=1.6e-23 interpro_id=IPR005234 interpro_description=Chromosome segregation/condensation protein ScpB, prokaryote)
ACD1_56_28
Clostridium thermocellum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33169..34206)
DNA (1038bp) protein (346aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=2 Tax=Clostridium thermocellum RepID=C7HCP7_CLOTM (db=UNIREF evalue=3.0e-36 bit_score=155.0 identity=35.87 coverage=72.2543352601156)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] (db=KEGG evalue=1.0e-35 bit_score=154.0 identity=35.51 coverage=72.2543352601156)
seg (db=Seg db_id=seg from=11 to=22)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=54 to=341 evalue=3.0e-57)
ACD1_56_29
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(34296..35396)
DNA (1101bp) protein (367aa)
phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] (db=KEGG evalue=3.0e-36 bit_score=156.0 identity=38.72 coverage=74.6594005449591)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=265)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=242 to=259)
ACD1_56_30
ACD1, ACD1, ACD1, ACD1, Parcubacteria, Bacteria

Not on your lists

comp(35530..35706)
DNA (177bp) protein (59aa)
SpoVT_AbrB (db=HMMPfam db_id=PF04014 from=20 to=54 evalue=3.5e-05 interpro_id=IPR007159 interpro_description=Transcription regulator AbrB/SpoV, predicted)
Displaying items 1-30 of 51 in total

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