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ACD24_17

Alias: ACD24_43432.8884.19

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_17_1
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(2..343)
DNA (342bp) protein (114aa)
seg (db=Seg db_id=seg from=3 to=18)
seg (db=Seg db_id=seg from=65 to=79)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=70 to=114 evalue=3.0e-08)
no description (db=Gene3D db_id=G3DSA:3.90.76.10 from=70 to=114 evalue=0.00023)
ACD24_17_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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634..2289
DNA (1656bp) protein (552aa)
Type II secretion system protein E n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSJ7_9BACT (db=UNIREF evalue=2.0e-117 bit_score=426.0 identity=55.41 coverage=67.7536231884058)
type II secretion system protein E (GspE)
type II secretion system protein E (GspE)
T2SP_E (db=PatternScan db_id=PS00662 from=363 to=377 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD24_17_3

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2234..3721
DNA (1488bp) protein (496aa)
pilin biogenesis protein
seg (db=Seg db_id=seg from=411 to=423)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
ACD24_17_4
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

3663..4151
DNA (489bp) protein (163aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Pili subunits (db=superfamily db_id=SSF54523 from=24 to=149 evalue=7.0e-10)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=21 to=44 evalue=2.2e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
N_methyl (db=HMMPfam db_id=PF07963 from=22 to=40 evalue=6.1e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD24_17_5

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4096..4728
DNA (633bp) protein (211aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=21 to=41 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=20 to=43 evalue=0.0009 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:EKD95683.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD24_17_6
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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4725..5246
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=9 to=32 evalue=0.0036 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
transmembrane_regions 17..39 Tax=RBG_16_WWE3_37_10_curated
ACD24_17_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

5254..5676
DNA (423bp) protein (141aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=2 to=13)
seg 2..13 Tax=RBG_16_WWE3_37_10_curated
ACD24_17_8
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

5710..6219
DNA (510bp) protein (170aa)
seg (db=Seg db_id=seg from=102 to=113)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Pili subunits (db=superfamily db_id=SSF54523 from=20 to=150 evalue=4.6e-12)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=17 to=40 evalue=1.5e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD24_17_9
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

6237..7133
DNA (897bp) protein (299aa)
seg (db=Seg db_id=seg from=179 to=192)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=10 to=138 evalue=4.0e-21 interpro_id=IPR009002 interpro_description=FMN-binding split barrel, related)
CheY-like (db=superfamily db_id=SSF52172 from=166 to=291 evalue=4.0e-13 interpro_id=IPR011006 interpro_description=CheY-like)
Pyridox_oxidase (db=HMMPfam db_id=PF01243 from=11 to=91 evalue=6.0e-10 interpro_id=IPR011576 interpro_description=Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO=Molecular Function: FMN binding (GO:0010181))
ACD24_17_10

Not on your lists

7179..7679
DNA (501bp) protein (167aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=13 to=34)
Uncharacterized protein {ECO:0000313|EMBL:EKD95688.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD24_17_11
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

7676..8923
DNA (1248bp) protein (416aa)
Alkaline phosphatase (EC:3.1.3.1)
seg (db=Seg db_id=seg from=4 to=18)
seg (db=Seg db_id=seg from=182 to=192)
seg (db=Seg db_id=seg from=306 to=366)
Displaying 11 items

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