Alias: ACD24_2170.8239.19
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD24_56_1
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
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Not on your lists |
comp(306..1301)
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=303 to=322)
transmembrane_regions (db=TMHMM db_id=tmhmm from=137 to=159)
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ACD24_56_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
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Not on your lists |
comp(1291..1950)
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tRNA dimethylallyltransferase
tRNA dimethylallyltransferase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GB43_9FIRM (db=UNIREF evalue=3.0e-18 bit_score=95.1 identity=31.92 coverage=92.2727272727273)
seg (db=Seg db_id=seg from=92 to=107)
coiled-coil (db=Coil db_id=coil from=72 to=100 evalue=NA)
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ACD24_56_3
uncultured bacterium, Bacteria
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Not on your lists |
comp(2268..3482)
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hypothetical protein
tRNA-I(6)A37 thiotransferase enzyme MiaB n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GSL4_9FIRM (db=UNIREF evalue=1.0e-74 bit_score=283.0 identity=40.2 coverage=88.8888888888889)
MTTASE_RADICAL (db=PatternScan db_id=PS01278 from=171 to=191 evalue=0.0 interpro_id=IPR020612 interpro_description=Methylthiotransferase, conserved site GO=Cellular Component: cellular_component (GO:0005575), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
TIGR00089: RNA modification enzyme, MiaB fa (db=HMMTigr db_id=TIGR00089 from=8 to=403 evalue=4.6e-88 interpro_id=IPR005839 interpro_description=Methylthiotransferase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: RNA modification (GO:0009451), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539))
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ACD24_56_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(3511..3843)
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Methionine-tRNA ligase
Methionyl-tRNA synthetase n=1 Tax=Polaribacter sp. MED152 RepID=A2TY59_9FLAO (db=UNIREF evalue=4.0e-15 bit_score=83.6 identity=49.07 coverage=94.5945945945946)
seg (db=Seg db_id=seg from=24 to=36)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=110 evalue=1.3e-32 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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ACD24_56_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(3932..4486)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=11 to=23)
coiled-coil (db=Coil db_id=coil from=164 to=185 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD96171.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD24_56_6
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
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Not on your lists |
4557..4853
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transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions 10..29 Tax=RBG_16_WWE3_37_10_curated
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ACD24_56_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
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Not on your lists |
4876..5028
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seg (db=Seg db_id=seg from=32 to=45)
Ribosomal_L34 (db=HMMPfam db_id=PF00468 from=2 to=44 evalue=9.0e-19 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmH_bact: ribosomal protein L34 (db=HMMTigr db_id=TIGR01030 from=2 to=45 evalue=2.7e-14 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RL34_STRPN_P66256; (db=BlastProDom db_id=PD003101 from=3 to=31 evalue=0.0003 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD24_56_8
uncultured bacterium, Bacteria
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Not on your lists |
5025..5375
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hypothetical protein
RNPA_PSEAO Ribonuclease P protein component (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00XA5_OSTTA (db=UNIREF evalue=4.0e-08 bit_score=60.5 identity=31.37 coverage=84.6153846153846)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=3 to=111 evalue=2.9e-26 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=114 evalue=4.3e-24 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
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ACD24_56_9
uncultured bacterium, Bacteria
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Not on your lists |
5317..5532
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hypothetical protein
UPF0161 protein CBY_2717 n=2 Tax=Clostridium butyricum RepID=B1QSN1_CLOBU (db=UNIREF evalue=5.0e-19 bit_score=96.7 identity=60.56 coverage=94.4444444444444)
DUF37 (db=HMMPfam db_id=PF01809 from=1 to=70 evalue=2.2e-26 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
Y2800_THETN_Q8R6K5; (db=BlastProDom db_id=PD004225 from=24 to=71 evalue=3.0e-15 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
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ACD24_56_10
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
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Not on your lists |
5565..6356
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hypothetical protein
seg (db=Seg db_id=seg from=65 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=213 to=235)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
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ACD24_56_11
uncultured bacterium, Bacteria
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Not on your lists |
6373..6828
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hypothetical protein
seg (db=Seg db_id=seg from=3 to=17)
seg (db=Seg db_id=seg from=132 to=146)
R3H (db=HMMPfam db_id=PF01424 from=105 to=150 evalue=6.0e-14 interpro_id=IPR001374 interpro_description=Single-stranded nucleic acid binding R3H GO=Molecular Function: nucleic acid binding (GO:0003676))
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ACD24_56_12
uncultured bacterium, Bacteria
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Not on your lists |
6917..8035
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dnaN; DNA polymerase III, beta subunit (EC:2.7.7.7)
no description (db=HMMSmart db_id=SM00480 from=17 to=365 evalue=2.5e-106 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
dnan: DNA polymerase III, beta subunit (db=HMMTigr db_id=TIGR00663 from=1 to=369 evalue=6.5e-89 interpro_id=IPR001001 interpro_description=DNA polymerase III, beta chain GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Biological Process: DNA replication (GO:0006260), Molecular Function: 3'-5' exonuclease activity (GO:0008408), Cellular Component: DNA polymerase III complex (GO:0009360))
DNA clamp (db=superfamily db_id=SSF55979 from=247 to=369 evalue=4.7e-32)
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ACD24_56_13
RBG_16_WWE3_37_10_curated, WWE3, Bacteria
|
Not on your lists |
comp(8013..8279)
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8013..8279 - (rbs_motif=None rbs_spacer=None)
coiled-coil 2..30 Tax=RBG_16_WWE3_37_10_curated
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