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ACD24_86

Alias: ACD24_160.2614.21

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_86_1
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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1..183
DNA (183bp) protein (61aa)
Ribosomal_S16 (db=HMMPfam db_id=PF00886 from=1 to=31 evalue=7.1e-05 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S ribosomal protein S16 Tax=RBG_16_WWE3_37_10_curated
hypothetical protein
ACD24_86_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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196..438
DNA (243bp) protein (81aa)
hypothetical protein
KH_2 (db=HMMPfam db_id=PF07650 from=34 to=79 evalue=3.4e-08 interpro_id=IPR004044 interpro_description=K Homology, type 2 GO=Molecular Function: RNA binding (GO:0003723))
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=63 evalue=1.8e-07 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_TYPE_2 (db=ProfileScan db_id=PS50823 from=1 to=76 evalue=9.711 interpro_id=IPR004044 interpro_description=K Homology, type 2 GO=Molecular Function: RNA binding (GO:0003723))
ACD24_86_3
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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466..1155
DNA (690bp) protein (230aa)
tRNA (guanine-N(1)-)-methyltransferase
seg (db=Seg db_id=seg from=48 to=60)
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=2 to=227 evalue=5.8e-79 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
alpha/beta knot (db=superfamily db_id=SSF75217 from=2 to=222 evalue=2.7e-71)
ACD24_86_4
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(1193..1981)
DNA (789bp) protein (263aa)
seg (db=Seg db_id=seg from=250 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
coiled-coil (db=Coil db_id=coil from=54 to=75 evalue=NA)
PilO (db=HMMPfam db_id=PF04350 from=54 to=185 evalue=9.2e-08)
ACD24_86_5
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(1974..2567)
DNA (594bp) protein (198aa)
seg (db=Seg db_id=seg from=30 to=41)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
PilN (db=HMMPfam db_id=PF05137 from=5 to=146 evalue=1.9e-11 interpro_id=IPR007813 interpro_description=Fimbrial assembly)
transmembrane_regions 21..43 Tax=RBG_16_WWE3_37_10_curated
ACD24_86_6
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(2572..2652)
DNA (81bp) protein (27aa)
2572..2652 - (rbs_motif=None rbs_spacer=None)
pilM; Type IV pilus assembly protein Tax=RBG_16_WWE3_37_10_curated
Displaying 6 items

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