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ACD24_129

Alias: ACD24_7516.2771.19

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD24_129_1

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comp(3..236)
DNA (234bp) protein (78aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XVR8_9LACO (db=UNIREF evalue=8.0e-21 bit_score=102.0 identity=53.85 coverage=98.7179487179487)
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=2 to=78 evalue=3.0e-27 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
Ribosomal_S3_N (db=HMMPfam db_id=PF00417 from=1 to=60 evalue=1.1e-23 interpro_id=IPR008282 interpro_description=Ribosomal protein S3, N-terminal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_129_2
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(238..600)
DNA (363bp) protein (121aa)
seg (db=Seg db_id=seg from=54 to=75)
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=4 to=113 evalue=2.7e-28 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=9 to=110 evalue=2.3e-27 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.90.470.10 from=4 to=116 evalue=1.6e-23 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_129_3
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(627..902)
DNA (276bp) protein (92aa)
rpsS; ribosomal protein S19
seg (db=Seg db_id=seg from=13 to=28)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=52 to=76 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=90 evalue=7.3e-51 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD24_129_4

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comp(1525..1641)
DNA (117bp) protein (39aa)
1525..1641 - (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD95477.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD24_129_5
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(1750..2049)
DNA (300bp) protein (100aa)
50S ribosomal protein L23
50S ribosomal protein L23 n=1 Tax=Idiomarina baltica OS145 RepID=A3WQT4_9GAMM (db=UNIREF evalue=1.0e-13 bit_score=78.6 identity=45.16 coverage=90.0)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=98 evalue=1.4e-21 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=5 to=96 evalue=3.3e-21 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD24_129_6

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comp(2036..2665)
DNA (630bp) protein (210aa)
50S ribosomal protein L4
50S ribosomal protein L4 n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA16_9FIRM (db=UNIREF evalue=8.0e-50 bit_score=199.0 identity=47.8 coverage=96.6666666666667)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=17 to=206 evalue=1.7e-70 interpro_id=IPR015498 interpro_description=Ribosomal protein L4)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=17 to=206 evalue=1.7e-70 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
ACD24_129_7
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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comp(2662..2811)
DNA (150bp) protein (50aa)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=1 to=47 evalue=6.4e-12)
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=47 evalue=2.9e-11 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RBG_16_WWE3_37_10_curated
rplC; 50S ribosomal protein L3
Displaying 7 items

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