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ACD80_29

Alias: ACD80_35269.32427.20

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_29_1
ACD80, SR1, Bacteria

Not on your lists

comp(760..1662)
DNA (903bp) protein (301aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=73)
seg (db=Seg db_id=seg from=52 to=67)
seg (db=Seg db_id=seg from=114 to=125)
ACD80_29_2
ACD80, SR1, Bacteria

Not on your lists

1671..3317
DNA (1647bp) protein (549aa)
hypothetical protein
hypothetical protein
Glutamyl-tRNA synthetase n=4 Tax=Clostridium perfringens RepID=SYE_CLOP1 (db=UNIREF evalue=6.0e-127 bit_score=458.0 identity=41.74 coverage=99.0892531876138)
GLUTAMYL-TRNA SYNTHETASE 1, 2, 3 (GLUTAMATE--TRNA LIGASE 1, 2, 3) (db=HMMPanther db_id=PTHR10119:SF1 from=36 to=547 evalue=2.4e-97)
ACD80_29_3
ACD80, SR1, Bacteria

Not on your lists

3441..3677
DNA (237bp) protein (79aa)
3441..3677 + (rbs_motif=TTTAT rbs_spacer=15bp)
hypothetical protein Tax=ACD80
ACD80_29_4
ACD80, SR1, Bacteria

Not on your lists

3668..3937
DNA (270bp) protein (90aa)
RelE-like (db=superfamily db_id=SSF143011 from=4 to=84 evalue=4.2e-13)
Plasmid_killer (db=HMMPfam db_id=PF05015 from=41 to=80 evalue=1.3e-05 interpro_id=IPR007711 interpro_description=Plasmid maintenance system killer)
RelE-like Tax=ACD80
ACD80_29_5
unknown

Not on your lists

4259..4999
DNA (741bp) protein (247aa)
Transcriptional regulator, TrmB
Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJZ4_9GAMM (db=UNIREF evalue=4.0e-15 bit_score=85.1 identity=27.67 coverage=97.165991902834)
coiled-coil (db=Coil db_id=coil from=80 to=101 evalue=NA)
TrmB (db=HMMPfam db_id=PF01978 from=9 to=76 evalue=3.1e-13 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
possibly transcriptional regulator Jill Banfield (11/16/12)
ACD80_29_6
ACD80, SR1, Bacteria

Not on your lists

5008..7758
DNA (2751bp) protein (917aa)
seg (db=Seg db_id=seg from=28 to=45)
seg 28..45 Tax=ACD80
ACD80_29_7
ACD80, SR1, Bacteria

Not on your lists

7972..10308
DNA (2337bp) protein (779aa)
seg (db=Seg db_id=seg from=576 to=591)
seg (db=Seg db_id=seg from=336 to=345)
coiled-coil (db=Coil db_id=coil from=143 to=168 evalue=NA)
coiled-coil 143..168 Tax=ACD80
ACD80_29_8
ACD80, SR1, Bacteria

Not on your lists

10336..10509
DNA (174bp) protein (58aa)
10336..10509 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
hypothetical protein
ACD80_29_9
ACD80, SR1, Bacteria

Not on your lists

10549..12357
DNA (1809bp) protein (603aa)
seg (db=Seg db_id=seg from=116 to=130)
seg (db=Seg db_id=seg from=325 to=334)
seg 116..130 Tax=ACD80
ACD80_29_10

Not on your lists

comp(12423..13016)
DNA (594bp) protein (198aa)
hypothetical protein
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UR95_9AQUI (db=UNIREF evalue=8.0e-66 bit_score=253.0 identity=62.09 coverage=91.4141414141414)
seg (db=Seg db_id=seg from=185 to=197)
CLP_PROTEASE_SER (db=PatternScan db_id=PS00381 from=90 to=101 evalue=0.0 interpro_id=IPR018215 interpro_description=Peptidase S14, ClpP, active site GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
ACD80_29_11
ACD80, SR1, Bacteria

Not on your lists

13208..14758
DNA (1551bp) protein (517aa)
seg (db=Seg db_id=seg from=27 to=41)
seg (db=Seg db_id=seg from=417 to=430)
PGBD-like (db=superfamily db_id=SSF47090 from=433 to=512 evalue=1.3e-09 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:1.10.101.10 from=441 to=511 evalue=1.9e-06 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
ACD80_29_12
ACD80, SR1, Bacteria

Not on your lists

14826..15671
DNA (846bp) protein (282aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
seg (db=Seg db_id=seg from=65 to=82)
seg (db=Seg db_id=seg from=2 to=14)
seg 2..14 Tax=ACD80
ACD80_29_13
ACD80, SR1, Bacteria

Not on your lists

15783..16757
DNA (975bp) protein (325aa)
hypothetical protein
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=25 to=314 evalue=1.8e-73 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase)
IPPT (db=HMMPfam db_id=PF01715 from=58 to=303 evalue=4.4e-63 interpro_id=IPR002627 interpro_description=tRNA isopentenyltransferase GO=Molecular Function: tRNA isopentenyltransferase activity (GO:0004811), Molecular Function: ATP binding (GO:0005524), Biological Process: tRNA processing (GO:0008033))
TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE (db=HMMPanther db_id=PTHR11088:SF21 from=56 to=303 evalue=6.2e-57)
ACD80_29_14
ACD80, SR1, Bacteria

Not on your lists

16914..17363
DNA (450bp) protein (150aa)
tRNA-adenosine deaminase (EC:3.5.4.-)
seg (db=Seg db_id=seg from=7 to=23)
CYTIDINE/DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11079:SF9 from=10 to=145 evalue=2.1e-29)
CYTOSINE DEAMINASE (db=HMMPanther db_id=PTHR11079 from=10 to=145 evalue=2.1e-29)
ACD80_29_15
ACD80, SR1, Bacteria

Not on your lists

comp(17727..18479)
DNA (753bp) protein (251aa)
hypothetical protein
seg (db=Seg db_id=seg from=230 to=244)
YebC-like (db=superfamily db_id=SSF75625 from=2 to=249 evalue=1.1e-69 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
DUF28 (db=HMMPfam db_id=PF01709 from=3 to=248 evalue=4.1e-67 interpro_id=IPR002876 interpro_description=Protein of unknown function DUF28)
ACD80_29_16
ACD80, SR1, Bacteria

Not on your lists

comp(18503..18934)
DNA (432bp) protein (144aa)
Regulatory protein RecX
seg (db=Seg db_id=seg from=101 to=110)
RecX (db=HMMPfam db_id=PF02631 from=27 to=141 evalue=5.3e-17 interpro_id=IPR003783 interpro_description=Regulatory protein RecX GO=Biological Process: regulation of DNA repair (GO:0006282))
regulatory protein RecX; K03565 regulatory protein alias=ACD80_35269.32427.20G0016,ACD80_35269.32427.20_16,ACD80_C00029G00016 id=132433 tax=ACD80 species=Marinomonas sp. MWYL1 genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=SR1
ACD80_29_17
unknown

Not on your lists

comp(19027..19647)
DNA (621bp) protein (207aa)
isoleucyl-tRNA synthetase
Isoleucyl-tRNA synthetase n=1 Tax=Kordia algicida OT-1 RepID=A9DQH3_9FLAO (db=UNIREF evalue=8.0e-14 bit_score=80.1 identity=35.29 coverage=79.2270531400966)
Isoleucyl-tRNA synthetase n=1 Tax=Kordia algicida OT-1 RepID=A9DQH3_9FLAO Tax=ACD80
ACD80_29_18
ACD80, SR1, Bacteria

Not on your lists

19794..20252
DNA (459bp) protein (153aa)
Dihydrofolate reductase
Dihydrofolate reductase-like (db=superfamily db_id=SSF53597 from=1 to=152 evalue=6.9e-49)
DHFR_1 (db=HMMPfam db_id=PF00186 from=3 to=142 evalue=1.3e-45 interpro_id=IPR001796 interpro_description=Dihydrofolate reductase domain GO=Molecular Function: dihydrofolate reductase activity (GO:0004146), Biological Process: glycine biosynthetic process (GO:0006545), Biological Process: nucleotide biosynthetic process (GO:0009165))
no description (db=Gene3D db_id=G3DSA:3.40.430.10 from=1 to=152 evalue=2.4e-41)
ACD80_29_19
unknown

Not on your lists

comp(20255..21073)
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KVD0_9ALVE (db=UNIREF evalue=5.0e-10 bit_score=68.6 identity=25.36 coverage=93.4065934065934)
Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KVD0_9ALVE Tax=ACD80
ACD80_29_20
ACD80, SR1, Bacteria

Not on your lists

comp(21108..21536)
DNA (429bp) protein (143aa)
21108..21536 - (rbs_motif=TTTA rbs_spacer=13bp)
hypothetical protein Tax=ACD80
ACD80_29_21
ACD80, SR1, Bacteria

Not on your lists

comp(21813..22445)
DNA (633bp) protein (211aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=74)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
coiled-coil 2..23 Tax=ACD80
ACD80_29_22
ACD80, SR1, Bacteria

Not on your lists

comp(22749..23474)
DNA (726bp) protein (242aa)
hypothetical protein
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=2 to=228 evalue=4.1e-41 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
TruB_N (db=HMMPfam db_id=PF01509 from=21 to=186 evalue=8.1e-25 interpro_id=IPR002501 interpro_description=Pseudouridine synthase II, TruB, N-terminal GO=Biological Process: RNA processing (GO:0006396))
TRNA-PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR13767 from=111 to=241 evalue=9.0e-23)
ACD80_29_23
ACD80, SR1, Bacteria

Not on your lists

23651..23914
DNA (264bp) protein (88aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=6.0)
transmembrane_regions 4..23 Tax=ACD80
ACD80_29_24
ACD80, SR1, Bacteria

Not on your lists

23952..24341
DNA (390bp) protein (130aa)
seg (db=Seg db_id=seg from=38 to=53)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=6.0)
seg 38..53 Tax=ACD80
ACD80_29_25
ACD80, SR1, Bacteria

Not on your lists

24374..24667
DNA (294bp) protein (98aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=96)
transmembrane_regions 7..29 Tax=ACD80
ACD80_29_26
ACD80, SR1, Bacteria

Not on your lists

24788..25327
DNA (540bp) protein (180aa)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=18 evalue=6.0)
PROKAR_LIPOPROTEIN Tax=ACD80
ACD80_29_27
ACD80, SR1, Bacteria

Not on your lists

25451..26227
DNA (777bp) protein (259aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=180)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
mostly 6 transmembrane domains Jill Banfield (11/16/12)
ACD80_29_28
ACD80, SR1, Bacteria

Not on your lists

26265..26657
DNA (393bp) protein (131aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
4 transmembrane domains Jill Banfield (11/16/12)
ACD80_29_29
ACD80, SR1, Bacteria

Not on your lists

26638..26958
DNA (321bp) protein (107aa)
FeS assembly SUF system protein
DUF59 (db=HMMPfam db_id=PF01883 from=12 to=82 evalue=9.1e-19 interpro_id=IPR002744 interpro_description=Protein of unknown function DUF59)
Fe-S cluster assembly (FSCA) domain-like (db=superfamily db_id=SSF117916 from=3 to=106 evalue=2.7e-18)
fes assembly suf system protein alias=ACD80_35269.32427.20G0029,ACD80_35269.32427.20_29,ACD80_C00029G00029 id=132435 tax=ACD80 species=Chryseobacterium gleum genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=SR1
ACD80_29_30
ACD80, SR1, Bacteria

Not on your lists

comp(27023..27628)
DNA (606bp) protein (202aa)
seg (db=Seg db_id=seg from=181 to=194)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg 181..194 Tax=ACD80
Displaying items 1-30 of 33 in total

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