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ACD80_36

Alias: ACD80_1004.9416.22

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_36_1
ACD80, ACD80, ACD80, ACD80, SR1, Bacteria

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comp(1..90)
DNA (90bp) protein (30aa)
1..90 - (rbs_motif=TTAATT rbs_spacer=10bp)
ACD80_36_2
ACD80, SR1, Bacteria

Not on your lists

comp(42..530)
DNA (489bp) protein (163aa)
42..530 - (rbs_motif=TTA rbs_spacer=9bp)
hypothetical protein Tax=ACD80
ACD80_36_3

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555..1727
DNA (1173bp) protein (391aa)
hypothetical protein
hypothetical protein
Elongation factor Tu n=2 Tax=Clostridia RepID=EFTU_ANATD (db=UNIREF evalue=9.0e-160 bit_score=566.0 identity=70.08 coverage=98.9769820971867)
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=45 to=60 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
ACD80_36_4
ACD80, SR1, Bacteria

Not on your lists


1820..2146
DNA (327bp) protein (109aa)
hypothetical protein
seg (db=Seg db_id=seg from=25 to=38)
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=9 to=107 evalue=3.2e-37 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=6 to=107 evalue=8.4e-33 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD80_36_5
ACD80, SR1, Bacteria

Not on your lists


2224..2826
DNA (603bp) protein (201aa)
hypothetical protein
seg (db=Seg db_id=seg from=50 to=65)
Translation proteins (db=superfamily db_id=SSF50447 from=6 to=198 evalue=1.0e-36 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=6 to=198 evalue=2.5e-28)
ACD80_36_6
ACD80, SR1, Bacteria

Not on your lists


2857..3486
DNA (630bp) protein (210aa)
50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=3 to=209 evalue=3.4e-58 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=20 to=208 evalue=3.4e-56 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746 from=20 to=209 evalue=3.5e-49 interpro_id=IPR013005 interpro_description=Ribosomal protein L4/L1e, bacterial-type)
ACD80_36_7
ACD80, SR1, Bacteria

Not on your lists


3516..3857
DNA (342bp) protein (114aa)
rplW; 50S ribosomal protein L23
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=25 to=113 evalue=4.6e-20 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=28 to=111 evalue=1.4e-18 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=22 to=111 evalue=3.3e-18 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD80_36_8
ACD80, SR1, Bacteria

Not on your lists


3959..4807
DNA (849bp) protein (283aa)
hypothetical protein
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=3 to=281 evalue=1.7e-113 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=3 to=279 evalue=9.8e-94 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=94 to=282 evalue=8.8e-59 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_9
ACD80, SR1, Bacteria

Not on your lists


4905..5162
DNA (258bp) protein (86aa)
hypothetical protein
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=84 evalue=1.5e-38 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=83 evalue=2.7e-37 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_10
ACD80, SR1, Bacteria

Not on your lists


5226..5591
DNA (366bp) protein (122aa)
50S ribosomal protein L22
Ribosomal_L22 (db=HMMPfam db_id=PF00237 from=16 to=118 evalue=1.8e-24 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=12 to=121 evalue=9.0e-24 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.90.470.10 from=12 to=119 evalue=5.2e-20 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_11
ACD80, SR1, Bacteria

Not on your lists


5600..6268
DNA (669bp) protein (223aa)
rpsC; ribosomal protein S3
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=164 to=198 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=212 evalue=1.0e-47 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S/40S RIBOSOMAL PROTEIN S3 (db=HMMPanther db_id=PTHR11760 from=91 to=212 evalue=4.7e-44)
ACD80_36_12
ACD80, SR1, Bacteria

Not on your lists


6303..6722
DNA (420bp) protein (140aa)
hypothetical protein
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=60 to=71 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=3 to=128 evalue=4.1e-51 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal protein L16p/L10e (db=superfamily db_id=SSF54686 from=4 to=135 evalue=2.0e-41 interpro_id=IPR016180 interpro_description=Ribosomal protein L10e/L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_13
ACD80, SR1, Bacteria

Not on your lists

6838..7065
DNA (228bp) protein (76aa)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=8 to=65 evalue=1.5e-12 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=6 to=65 evalue=3.2e-10 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=10 to=65 evalue=2.8e-06 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.10.287.310 from=4 to=72 evalue=3.0e-05 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_14
unknown

Not on your lists


7046..7303
DNA (258bp) protein (86aa)
30S ribosomal protein S17
30S ribosomal protein S17 n=1 Tax=Turicibacter sp. PC909 RepID=D4W4Y9_9FIRM (db=UNIREF evalue=1.0e-16 bit_score=88.6 identity=53.33 coverage=86.046511627907)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=8 to=85 evalue=5.9e-21 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=7 to=84 evalue=3.4e-19 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD80_36_15
ACD80, SR1, Bacteria

Not on your lists


7331..7711
DNA (381bp) protein (127aa)
hypothetical protein
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=126 evalue=1.0e-42 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=1 to=126 evalue=2.9e-35 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L14 (db=superfamily db_id=SSF50193 from=1 to=126 evalue=2.9e-33 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_16
ACD80, SR1, Bacteria

Not on your lists


7807..8100
DNA (294bp) protein (98aa)
seg (db=Seg db_id=seg from=41 to=53)
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=3 to=95 evalue=4.3e-12 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=96 evalue=3.8e-08 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=8 to=75 evalue=4.9e-05 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_17
ACD80, SR1, Bacteria

Not on your lists


8132..8671
DNA (540bp) protein (180aa)
hypothetical protein
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=5 to=179 evalue=4.0e-46 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=5 to=179 evalue=4.0e-46)
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=1 to=179 evalue=1.1e-40 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_18
ACD80, SR1, Bacteria

Not on your lists


8717..8932
DNA (216bp) protein (72aa)
hypothetical protein
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=33 to=55 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=1 to=71 evalue=1.8e-19 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=26 to=70 evalue=2.6e-18 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD80_36_19
ACD80, SR1, Bacteria

Not on your lists


9062..9460
DNA (399bp) protein (133aa)
rpsH; 30S ribosomal protein S8
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=5 to=133 evalue=8.2e-29 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=7 to=133 evalue=6.2e-27 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=3 to=133 evalue=3.1e-22 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 19 items

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