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ACD80_62

Alias: ACD80_5491.16651.25

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
ACD80_62_1
ACD80, SR1, Bacteria

Not on your lists

125..667
-----------------
DNA (543bp)
protein (181aa)
seg (db=Seg db_id=seg from=25 to=41)
ACD80_62_2
ACD80, SR1, Bacteria

Not on your lists

720..1325
-----------------
DNA (606bp)
protein (202aa)
hypothetical protein
23S ribosomal RNA methyltransferase (db=HMMPIR db_id=PIRSF005461 from=1 to=201 evalue=8.4e-47 interpro_id=IPR016448 interpro_description=23S ribosomal RNA methyltransferase GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: RNA methyltransferase activity (GO:0008173))
RIBOSOMAL RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10920 from=8 to=199 evalue=1.5e-45 interpro_id=IPR015507 interpro_description=Ribosomal RNA methyltransferase J GO=Molecular Function: methyltransferase activity (GO:0008168), Biological Process: rRNA methylation (GO:0031167))
FtsJ (db=HMMPfam db_id=PF01728 from=20 to=199 evalue=1.3e-35 interpro_id=IPR002877 interpro_description=Ribosomal RNA methyltransferase RrmJ/FtsJ GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
ACD80_62_3
ACD80, SR1, Bacteria

Not on your lists

1433..1654
-----------------
DNA (222bp)
protein (74aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
ACD80_62_4

Not on your lists

1673..2071
-----------------
DNA (399bp)
protein (133aa)
Copper binding protein, plastocyanin/azurin
seg (db=Seg db_id=seg from=26 to=41)
COPPER_BLUE (db=PatternScan db_id=PS00196 from=112 to=125 evalue=0.0 interpro_id=IPR000923 interpro_description=Blue (type 1) copper domain GO=Molecular Function: copper ion binding (GO:0005507), Molecular Function: electron carrier activity (GO:0009055))
no description (db=Gene3D db_id=G3DSA:2.60.40.420 from=33 to=132 evalue=2.8e-22 interpro_id=IPR008972 interpro_description=Cupredoxin)
Has blue copper protein domain Jill Banfield (11/16/12)
ACD80_62_5
ACD80, SR1, Bacteria

Not on your lists

2098..3012
-----------------
DNA (915bp)
protein (305aa)
multimeric flavodoxin, WrbA (db=KEGG evalue=3.0e-17 bit_score=92.8 identity=31.87 coverage=65.5737704918033)
seg (db=Seg db_id=seg from=37 to=48)
Flavoproteins (db=superfamily db_id=SSF52218 from=47 to=289 evalue=2.2e-27)
FMN_red (db=HMMPfam db_id=PF03358 from=48 to=246 evalue=6.7e-22 interpro_id=IPR005025 interpro_description=NADPH-dependent FMN reductase)
Heme-like domain: HCRACYSTANTQCHFYCS Jill Banfield (11/16/12)
ACD80_62_6
ACD80, SR1, Bacteria

Not on your lists

3267..4277
-----------------
DNA (1011bp)
protein (337aa)
Cation efflux protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=83 to=105)
seg (db=Seg db_id=seg from=209 to=220)
ACD80_62_7
ACD80, SR1, Bacteria

Not on your lists

comp(4304..4456)
-----------------
DNA (153bp)
protein (51aa)
seg (db=Seg db_id=seg from=3 to=14)
ACD80_62_8
ACD80, SR1, Bacteria

Not on your lists

4497..4925
-----------------
DNA (429bp)
protein (143aa)
Nuc_deoxyrib_tr (db=HMMPfam db_id=PF05014 from=28 to=104 evalue=7.4e-08 interpro_id=IPR007710 interpro_description=Nucleoside 2-deoxyribosyltransferase GO=Cellular Component: nucleus (GO:0005634), Molecular Function: deoxyribonucleoside 5'-monophosphate N-glycosidase activity (GO:0070694))
N-(deoxy)ribosyltransferase-like (db=superfamily db_id=SSF52309 from=62 to=140 evalue=3.6e-07)
ACD80_62_9
ACD80, SR1, Bacteria

Not on your lists

4976..6085
-----------------
DNA (1110bp)
protein (370aa)
hypothetical protein
hypothetical protein
GTP-binding protein YchF n=2 Tax=Clostridia RepID=A4XK71_CALS8 (db=UNIREF evalue=1.0e-101 bit_score=373.0 identity=52.96 coverage=97.5675675675676)
GTP-BINDING PROTEIN-RELATED (db=HMMPanther db_id=PTHR23305 from=1 to=369 evalue=7.4e-156)
ACD80_62_10
ACD80, SR1, Bacteria

Not on your lists

6221..7321
-----------------
DNA (1101bp)
protein (367aa)
hypothetical protein
seg (db=Seg db_id=seg from=322 to=333)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=18 to=90 evalue=2.6e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=10 to=96 evalue=3.2e-11 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD80_62_11
unknown

Not on your lists

7776..9500
-----------------
DNA (1725bp)
protein (575aa)
uvrC; excinuclease ABC subunit C
UvrABC system protein C n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KP10_9FIRM (db=UNIREF evalue=1.0e-45 bit_score=188.0 identity=27.44 coverage=91.4782608695652)
seg (db=Seg db_id=seg from=507 to=522)
seg (db=Seg db_id=seg from=453 to=466)
ACD80_62_12
ACD80, SR1, Bacteria

Not on your lists

9607..10497
-----------------
DNA (891bp)
protein (297aa)
coiled-coil (db=Coil db_id=coil from=136 to=164 evalue=NA)
ACD80_62_13
ACD80, SR1, Bacteria

Not on your lists

10525..10809
-----------------
DNA (285bp)
protein (95aa)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
ACD80_62_14
ACD80, SR1, Bacteria

Not on your lists

10842..11150
-----------------
DNA (309bp)
protein (103aa)
seg (db=Seg db_id=seg from=90 to=102)
ACD80_62_15
ACD80, SR1, Bacteria

Not on your lists

11205..14912
-----------------
DNA (3708bp)
protein (1236aa)
seg (db=Seg db_id=seg from=1091 to=1104)
seg (db=Seg db_id=seg from=933 to=947)
seg (db=Seg db_id=seg from=893 to=917)
coiled-coil (db=Coil db_id=coil from=1113 to=1134 evalue=NA)
ACD80_62_16
ACD80, SR1, Bacteria

Not on your lists

14979..16058
-----------------
DNA (1080bp)
protein (360aa)
seg (db=Seg db_id=seg from=191 to=202)
seg (db=Seg db_id=seg from=103 to=147)
seg (db=Seg db_id=seg from=58 to=63)
coiled-coil (db=Coil db_id=coil from=101 to=165 evalue=NA)
ACD80_62_17
ACD80, SR1, Bacteria

Not on your lists

16147..16491
-----------------
DNA (345bp)
protein (115aa)
seg (db=Seg db_id=seg from=99 to=114)
Displaying 17 items

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