ggKbase home page

ACD81_11

Alias: ACD81_2969.98551.54

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD81_11_1

Not on your lists


comp(3..185)
-----------------
DNA (183bp)
protein (61aa)
coiled-coil (db=Coil db_id=coil from=5 to=26 evalue=NA)
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=2 to=61 evalue=7.3e-10 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S20 (db=superfamily db_id=SSF46992 from=3 to=61 evalue=1.1e-07 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.20.58.110 from=5 to=61 evalue=5.2e-05 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD81_11_2
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(290..889)
-----------------
DNA (600bp)
protein (200aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4R9_9BACT (db=UNIREF evalue=2.0e-19 bit_score=98.6 identity=35.97 coverage=68.5)
protein of unknown function DUF88
DUF88 (db=HMMPfam db_id=PF01936 from=34 to=164 evalue=2.3e-25)
Uncharacterized protein {ECO:0000313|EMBL:KKT43218.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_3
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(970..1335)
-----------------
DNA (366bp)
protein (122aa)
seg (db=Seg db_id=seg from=91 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD81_11_4
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

1454..2035
-----------------
DNA (582bp)
protein (194aa)
ruvA; Holliday junction DNA helicase RuvA
ruvA: Holliday junction DNA helicase RuvA (db=HMMTigr db_id=TIGR00084 from=1 to=187 evalue=1.4e-32 interpro_id=IPR000085 interpro_description=Bacterial DNA recombination protein RuvA GO=Molecular Function: DNA helicase activity (GO:0003678), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=65 to=142 evalue=6.1e-19 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=67 to=158 evalue=3.8e-18)
ACD81_11_5
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

2041..3369
-----------------
DNA (1329bp)
protein (443aa)
UDP-N-acetylmuramyl tripeptide synthetase
seg (db=Seg db_id=seg from=44 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
FOLYLPOLYGLU_SYNT_1 (db=PatternScan db_id=PS01011 from=46 to=69 evalue=0.0 interpro_id=IPR018109 interpro_description=Folylpolyglutamate synthetase, conserved site GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD81_11_6

Not on your lists

3455..3979
-----------------
DNA (525bp)
protein (175aa)
3455..3979 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD23945.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_11_7
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(4046..4447)
-----------------
DNA (402bp)
protein (134aa)
seg (db=Seg db_id=seg from=88 to=108)
Uncharacterized protein {ECO:0000313|EMBL:KKT43223.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_8
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

4968..5522
-----------------
DNA (555bp)
protein (185aa)
DNA repair protein RecO
RecO_N (db=HMMPfam db_id=PF11967 from=1 to=66 evalue=2.9e-12)
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=80 evalue=3.2e-12 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) alias=ACD81_2969.98551.54G0008,ACD81_2969.98551.54_8,ACD81_C00011G00008 id=133208 tax=ACD81 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidetes phylum=Chloroflexi organism_group=OD1, not OD1-i organism_desc=OD1
ACD81_11_9
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

5597..7414
-----------------
DNA (1818bp)
protein (606aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=79)
seg (db=Seg db_id=seg from=60 to=73)
Uncharacterized protein {ECO:0000313|EMBL:KKT43226.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_10
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

7465..8862
-----------------
DNA (1398bp)
protein (466aa)
glycyl-tRNA synthetase
glycyl-tRNA synthetase
Glycyl-tRNA synthetase n=1 Tax=Treponema denticola RepID=SYG_TREDE (db=UNIREF evalue=2.0e-131 bit_score=473.0 identity=51.91 coverage=95.0643776824034)
glyS_dimeric: glycyl-tRNA synthetase (db=HMMTigr db_id=TIGR00389 from=6 to=465 evalue=6.5e-172 interpro_id=IPR002315 interpro_description=Glycyl-tRNA synthetase, alpha2 dimer GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
ACD81_11_11

Not on your lists

8976..9491
-----------------
DNA (516bp)
protein (172aa)
seg (db=Seg db_id=seg from=67 to=77)
Uncharacterized protein {ECO:0000313|EMBL:EKD23939.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_11_12
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(9660..10802)
-----------------
DNA (1143bp)
protein (381aa)
high-affinity branched-chain amino acid ABC transporter amino acid-binding protein
seg (db=Seg db_id=seg from=7 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=31 to=380 evalue=9.4e-56)
ACD81_11_13
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

10882..11679
-----------------
DNA (798bp)
protein (266aa)
iclR helix-turn-helix domain protein
Transcriptional regulator, TrmB n=1 Tax=Burkholderia sp. Ch1-1 RepID=D5NS62_9BURK (db=UNIREF evalue=7.0e-22 bit_score=107.0 identity=31.05 coverage=88.3458646616541)
coiled-coil (db=Coil db_id=coil from=73 to=94 evalue=NA)
TrmB (db=HMMPfam db_id=PF01978 from=6 to=73 evalue=8.5e-15 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
ACD81_11_14
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

11761..12201
-----------------
DNA (441bp)
protein (147aa)
seg (db=Seg db_id=seg from=123 to=135)
seg (db=Seg db_id=seg from=104 to=116)
Uncharacterized protein {ECO:0000313|EMBL:KKT43231.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_15
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

12201..12323
-----------------
DNA (123bp)
protein (41aa)
12201..12323 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKT43232.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_16
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

12289..12702
-----------------
DNA (414bp)
protein (138aa)
Phosphomannomutase n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KGG4_9FIRM (db=UNIREF evalue=6.0e-22 bit_score=106.0 identity=43.38 coverage=92.0289855072464)
phosphomannomutase (EC:5.4.2.8)
PGM_PMM (db=PatternScan db_id=PS00710 from=98 to=107 evalue=0.0 interpro_id=IPR016066 interpro_description=Alpha-D-phosphohexomutase, conserved site GO=Molecular Function: magnesium ion binding (GO:0000287))
PGM_PMM_I (db=HMMPfam db_id=PF02878 from=7 to=127 evalue=1.3e-32 interpro_id=IPR005844 interpro_description=Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: intramolecular transferase activity, phosphotransferases (GO:0016868))
ACD81_11_17
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

12699..13388
-----------------
DNA (690bp)
protein (230aa)
DNA polymerase III subunit delta'
seg (db=Seg db_id=seg from=123 to=132)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=5 to=151 evalue=1.6e-21)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=18 to=217 evalue=2.1e-18)
ACD81_11_18
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

13403..13975
-----------------
DNA (573bp)
protein (191aa)
seg (db=Seg db_id=seg from=120 to=133)
UDG (db=HMMPfam db_id=PF03167 from=33 to=175 evalue=2.7e-12 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
Uracil-DNA glycosylase-like (db=superfamily db_id=SSF52141 from=31 to=190 evalue=4.5e-11 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
no description (db=Gene3D db_id=G3DSA:3.40.470.10 from=31 to=189 evalue=2.5e-06 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
ACD81_11_19
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

13995..14456
-----------------
DNA (462bp)
protein (154aa)
pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein; K09979 hypothetical protein (db=KEGG evalue=5.0e-09 bit_score=63.2 identity=30.88 coverage=85.0649350649351)
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=1 to=138 evalue=6.2e-13 interpro_id=IPR009002 interpro_description=FMN-binding split barrel, related)
Pyridox_oxidase (db=HMMPfam db_id=PF01243 from=5 to=90 evalue=1.1e-08 interpro_id=IPR011576 interpro_description=Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO=Molecular Function: FMN binding (GO:0010181))
Uncharacterized protein {ECO:0000313|EMBL:KKR12328.1}; TaxID=1619013 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC2_39_22.;"
ACD81_11_20

Not on your lists

15186..15536
-----------------
DNA (351bp)
protein (117aa)
seg (db=Seg db_id=seg from=24 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKD23924.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_11_21

Not on your lists

15698..16279
-----------------
DNA (582bp)
protein (194aa)
ribosome recycling factor
Ribosome-recycling factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY73_9AQUI (db=UNIREF evalue=2.0e-27 bit_score=125.0 identity=43.62 coverage=94.3298969072165)
seg (db=Seg db_id=seg from=120 to=134)
coiled-coil (db=Coil db_id=coil from=121 to=142 evalue=NA)
ACD81_11_22

Not on your lists

16365..17396
-----------------
DNA (1032bp)
protein (344aa)
membrane-associated zinc metalloprotease
seg (db=Seg db_id=seg from=321 to=332)
seg (db=Seg db_id=seg from=2 to=16)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
ACD81_11_23
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

17406..18098
-----------------
DNA (693bp)
protein (231aa)
seg (db=Seg db_id=seg from=177 to=188)
Uncharacterized protein {ECO:0000313|EMBL:KKT43240.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_24
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(19491..20105)
-----------------
DNA (615bp)
protein (205aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSA5_9BACT (db=UNIREF evalue=7.0e-28 bit_score=126.0 identity=37.85 coverage=84.390243902439)
hypothetical protein
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=10 to=188 evalue=5.2e-22)
no description (db=Gene3D db_id=G3DSA:3.40.50.450 from=11 to=191 evalue=1.5e-19)
ACD81_11_25
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(20142..21182)
-----------------
DNA (1041bp)
protein (347aa)
ribokinase (EC:2.7.1.15)
seg (db=Seg db_id=seg from=57 to=68)
seg (db=Seg db_id=seg from=77 to=91)
seg (db=Seg db_id=seg from=191 to=200)
ACD81_11_26
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(21705..22445)
-----------------
DNA (741bp)
protein (247aa)
Transcriptional regulator, TrmB n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N9V7_9BACT (db=UNIREF evalue=3.0e-08 bit_score=62.4 identity=25.71 coverage=95.9514170040486)
seg (db=Seg db_id=seg from=53 to=73)
TrmB (db=HMMPfam db_id=PF01978 from=7 to=74 evalue=9.7e-13 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=134 evalue=6.5e-10)
ACD81_11_27
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

22613..23056
-----------------
DNA (444bp)
protein (148aa)
22613..23056 + (rbs_motif=ATAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:KKT43246.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_28

Not on your lists

23025..23132
-----------------
DNA (108bp)
protein (36aa)
seg (db=Seg db_id=seg from=2 to=14)
Uncharacterized protein {ECO:0000313|EMBL:EKD23922.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_11_29
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

23095..23235
-----------------
DNA (141bp)
protein (47aa)
23095..23235 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKT43247.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_11_30
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(23542..24534)
-----------------
DNA (993bp)
protein (331aa)
transketolase
transketolase
Transketolase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZW6_UNCTG (db=UNIREF evalue=3.0e-80 bit_score=301.0 identity=49.52 coverage=93.0513595166163)
seg (db=Seg db_id=seg from=217 to=232)
Displaying items 1-30 of 103 in total

View Taxonomy