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ACD81_24

Alias: ACD81_3195.23262.55

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD81_24_1

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42..755
-----------------
DNA (714bp)
protein (238aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=232 evalue=2.7e-50 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
RNase_HII (db=HMMPfam db_id=PF01351 from=15 to=233 evalue=3.0e-35 interpro_id=IPR001352 interpro_description=Ribonuclease HII/HIII GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease H activity (GO:0004523))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=13 to=197 evalue=5.2e-27)
ACD81_24_2

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1065..1295
-----------------
DNA (231bp)
protein (77aa)
1065..1295 + (rbs_motif=ATA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD23790.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD81_24_3
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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1393..2304
-----------------
DNA (912bp)
protein (304aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA delta(2)-isopentenylpyrophosphate transferase n=1 Tax=Geobacter sp. M18 RepID=C6MSV0_9DELT (db=UNIREF evalue=3.0e-51 bit_score=205.0 identity=39.94 coverage=96.3815789473684)
seg (db=Seg db_id=seg from=253 to=268)
miaA: tRNA delta(2)-isopentenylpyrophosphate (db=HMMTigr db_id=TIGR00174 from=6 to=292 evalue=4.2e-64 interpro_id=IPR018022 interpro_description=tRNA delta(2)-isopentenylpyrophosphate transferase)
ACD81_24_4
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(2338..2586)
-----------------
DNA (249bp)
protein (83aa)
coiled-coil (db=Coil db_id=coil from=56 to=77 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:KKT43023.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_24_5
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(2605..4044)
-----------------
DNA (1440bp)
protein (480aa)
glutamyl-tRNA(Gln) amidotransferase subunit B
glutamyl-tRNA(Gln) amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=5 Tax=Dehalococcoides RepID=GATB_DEHSC (db=UNIREF evalue=9.0e-116 bit_score=421.0 identity=43.96 coverage=96.875)
seg (db=Seg db_id=seg from=468 to=479)
ACD81_24_6
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

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comp(4223..5512)
-----------------
DNA (1290bp)
protein (430aa)
triple helix repeat-containing collagen
seg (db=Seg db_id=seg from=139 to=278)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
coiled-coil (db=Coil db_id=coil from=37 to=58 evalue=NA)
ACD81_24_7
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(5529..6200)
-----------------
DNA (672bp)
protein (224aa)
Sortase Surface protein transpeptidase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Sortase (db=HMMPfam db_id=PF04203 from=81 to=219 evalue=1.7e-20 interpro_id=IPR005754 interpro_description=Peptidase C60, sortase A/B)
Sortase (db=superfamily db_id=SSF63817 from=64 to=221 evalue=4.2e-15)
ACD81_24_8

Not on your lists

comp(6219..9179)
-----------------
DNA (2961bp)
protein (987aa)
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase
Sensor protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITV3_ACIBL (db=UNIREF evalue=1.0e-89 bit_score=335.0 identity=32.19 coverage=59.9797365754813)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=20 to=982 evalue=1.5e-63)
ACD81_24_9
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(11514..12776)
-----------------
DNA (1263bp)
protein (421aa)
hypothetical protein
seg (db=Seg db_id=seg from=41 to=60)
seg (db=Seg db_id=seg from=363 to=377)
seg (db=Seg db_id=seg from=303 to=327)
ACD81_24_10
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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13127..13294
-----------------
DNA (168bp)
protein (56aa)
13127..13294 + (rbs_motif=ATA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:KKT42577.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_24_11
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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13342..14283
-----------------
DNA (942bp)
protein (314aa)
chromosome segregation DNA-binding protein
parB_part: ParB-like partition proteins (db=HMMTigr db_id=TIGR00180 from=24 to=207 evalue=9.4e-22 interpro_id=IPR004437 interpro_description=ParB-like partition protein GO=Molecular Function: DNA binding (GO:0003677))
ParB/Sulfiredoxin (db=superfamily db_id=SSF110849 from=26 to=168 evalue=1.1e-17 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ParBc (db=HMMPfam db_id=PF02195 from=30 to=117 evalue=1.1e-10 interpro_id=IPR003115 interpro_description=ParB-like nuclease GO=Molecular Function: DNA binding (GO:0003677))
ACD81_24_12
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(14335..15843)
-----------------
DNA (1509bp)
protein (503aa)
seg (db=Seg db_id=seg from=350 to=373)
seg (db=Seg db_id=seg from=49 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=350 to=372)
seg (db=Seg db_id=seg from=3 to=10)
ACD81_24_13
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(15859..16341)
-----------------
DNA (483bp)
protein (161aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
Uncharacterized protein {ECO:0000313|EMBL:KKT42574.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_24_14
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(16360..16788)
-----------------
DNA (429bp)
protein (143aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=7 to=23)
Uncharacterized protein {ECO:0000313|EMBL:KKT42573.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_24_15
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(16876..18384)
-----------------
DNA (1509bp)
protein (503aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
seg (db=Seg db_id=seg from=16 to=33)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=11 to=34 evalue=0.0088 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:KKT42572.1}; TaxID=1619017 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ACD81_24_16
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

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comp(18389..18886)
-----------------
DNA (498bp)
protein (166aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=15 to=35 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
Pili subunits (db=superfamily db_id=SSF54523 from=17 to=70 evalue=9.0e-06)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=14 to=37 evalue=0.0028 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD81_24_17
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(18912..20123)
-----------------
DNA (1212bp)
protein (404aa)
type II secretion system protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=372 to=394)
transmembrane_regions (db=TMHMM db_id=tmhmm from=210 to=232)
transmembrane_regions (db=TMHMM db_id=tmhmm from=168 to=190)
ACD81_24_18
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

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comp(20319..22022)
-----------------
DNA (1704bp)
protein (568aa)
pilB; type 4 fimbrial assembly protein PilB
pilB; type 4 fimbrial assembly protein PilB
Type II secretion system protein E n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUI4_ACIC1 (db=UNIREF evalue=2.0e-115 bit_score=420.0 identity=39.08 coverage=97.0070422535211)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=155 to=565 evalue=8.6e-99)
ACD81_24_19
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(22099..22662)
-----------------
DNA (564bp)
protein (188aa)
seg (db=Seg db_id=seg from=11 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=133 to=149)
PROKAR_NTER_METHYL (db=PatternScan db_id=PS00409 from=7 to=27 evalue=0.0 interpro_id=IPR001120 interpro_description=Prokaryotic N-terminal methylation site)
ACD81_24_20
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(22870..23286)
-----------------
DNA (417bp)
protein (139aa)
chemotaxis protein CheY
Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B8K2_RUMGN (db=UNIREF evalue=1.0e-14 bit_score=82.0 identity=41.18 coverage=79.136690647482)
seg (db=Seg db_id=seg from=124 to=138)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=124 evalue=2.4e-29 interpro_id=IPR011006 interpro_description=CheY-like)
Displaying 20 items

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