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AMDSBA1_31

Alias: AMDSBA1_C30

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Displaying items 1-30 of 36 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_31_1
unknown

Not on your lists

3..284
DNA (282bp) protein (94aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
AMDSBA1_31_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(206..469)
DNA (264bp) protein (88aa)
CRISPR-associated protein, Cas2 family
CRISPR-associated protein Cas2 n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GV89_STRC2 (db=UNIREF evalue=1.7e-09 bit_score=67.4 identity=39.1 coverage=97.72727272727273)
TTP0101/SSO1404-like (db=superfamily db_id=SSF143430 from=1 to=79 evalue=7.4e-20)
(db=HMMPfam db_id=PF09827 from=1 to=74 evalue=7.8e-19 interpro_id=IPR019199 interpro_description=Virulence-associated protein D / CRISPR associated protein Cas2)
AMDSBA1_31_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(483..1475)
DNA (993bp) protein (331aa)
CRISPR-associated protein Cas1 rbh
CRISPR-associated protein Cas1 n=1 Tax=Thermococcus sp. AM4 RepID=B7R553_9EURY (db=UNIREF evalue=4.0e-75 bit_score=287.3 identity=43.5 coverage=97.2809667673716)
cas1_HMARI: CRISPR-associated endonuclease (db=HMMTigr db_id=TIGR03641 from=3 to=330 evalue=2.5e-195 interpro_id=IPR019858 interpro_description=CRISPR-associated protein Cas1, HMARI/TNEAP subtype)
cas1: CRISPR-associated endonuclease Cas1 (db=HMMTigr db_id=TIGR00287 from=4 to=325 evalue=1.0e-120 interpro_id=IPR002729 interpro_description=CRISPR-associated protein Cas1)
AMDSBA1_31_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1505..2038)
DNA (534bp) protein (178aa)
CRISPR-associated exonuclease, Cas4 family
CRISPR-associated protein Cas4 n=1 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7R680_9THEO (db=UNIREF evalue=4.8e-35 bit_score=153.3 identity=40.3 coverage=88.76404494382022)
(db=HMMPfam db_id=PF01930 from=19 to=177 evalue=2.3e-47 interpro_id=IPR022765 interpro_description=Dna2/Cas4, domain of unknown function DUF83)
cas4: CRISPR-associated protein Cas4 (db=HMMTigr db_id=TIGR00372 from=17 to=177 evalue=1.0e-25 interpro_id=IPR013343 interpro_description=CRISPR-associated protein Cas4)
AMDSBA1_31_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2035..4398)
DNA (2364bp) protein (788aa)
CRISPR-associated HD domain-containing protein
Metal dependent phosphohydrolase n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SGT7_THEM7 (db=UNIREF evalue=1.0e-44 bit_score=187.6 identity=38.8 coverage=34.89847715736041)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=261 to=602 evalue=1.6e-31)
cas3_HD: CRISPR-associated endonuclease Cas (db=HMMTigr db_id=TIGR01596 from=22 to=209 evalue=6.6e-20 interpro_id=IPR006483 interpro_description=CRISPR-associated HD domain)
AMDSBA1_31_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4420..5121)
DNA (702bp) protein (234aa)
CRISPR-associated protein Cas5
CRISPR-associated protein Cas5 n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WUC3_BACT2 (db=UNIREF evalue=6.3e-51 bit_score=206.5 identity=45.7 coverage=99.14529914529915)
CRISPR_cas5: CRISPR-associated protein Ca (db=HMMTigr db_id=TIGR02593 from=3 to=45 evalue=2.5e-11 interpro_id=IPR013422 interpro_description=CRISPR-associated protein Cas5, N-terminal)
(db=HMMPfam db_id=PF09704 from=4 to=72 evalue=8.9e-08 interpro_id=IPR021124 interpro_description=CRISPR-associated protein, Cas5)
AMDSBA1_31_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5147..6112)
DNA (966bp) protein (322aa)
Csh2 family CRISPR-associated protein
Csh2 family CRISPR-associated protein
CRISPR-associated protein, CT1132 family n=1 Tax=Bacillus coagulans 36D1 RepID=G2TLN4_BACCO (db=UNIREF evalue=9.5e-90 bit_score=335.9 identity=52.7 coverage=95.65217391304348)
AMDSBA1_31_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6151..8133)
DNA (1983bp) protein (661aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SGU0_THEM7 (db=UNIREF evalue=4.2e-92 bit_score=344.7 identity=34.3 coverage=99.54614220877458)
AMDSBA1_31_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8151..8936)
DNA (786bp) protein (262aa)
CRISPR-associated protein, Cas6 family
CRISPR-associated protein, Cas6 family n=2 Tax=Sulfobacillus acidophilus RepID=G8TT49_9FIRM (db=UNIREF evalue=1.8e-62 bit_score=245.0 identity=49.4 coverage=91.98473282442748)
cas_cas6: CRISPR-associated endoribonuclease (db=HMMTigr db_id=TIGR01877 from=52 to=252 evalue=3.5e-35 interpro_id=IPR010156 interpro_description=CRISPR-associated protein, Cas6)
(db=HMMPfam db_id=PF01881 from=100 to=253 evalue=1.0e-33 interpro_id=IPR002743 interpro_description=Bacteriophage c-st, CST018)
AMDSBA1_31_10
Sulfolobus solfataricus, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

9562..10869
DNA (1308bp) protein (436aa)
transport protein, permease
Major facilitator superfamily MFS_1 n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9S1F0_THEOJ (db=UNIREF evalue=7.4e-61 bit_score=240.4 identity=32.3 coverage=94.72477064220183)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
AMDSBA1_31_11
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11392..12765)
DNA (1374bp) protein (458aa)
major facilitator transporter
major facilitator transporter
Transmembrane transporter n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5HI29_STRPR (db=UNIREF evalue=6.7e-113 bit_score=413.3 identity=44.9 coverage=96.50655021834062)
transmembrane_regions (db=TMHMM db_id=tmhmm from=351 to=373)
AMDSBA1_31_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13303..14250)
DNA (948bp) protein (316aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K4D8_CUPNH (db=UNIREF evalue=2.7e-20 bit_score=105.1 identity=26.3 coverage=90.18987341772153)
(db=HMMPfam db_id=PF03466 from=88 to=292 evalue=7.1e-37 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=87 to=293 evalue=8.6e-35)
AMDSBA1_31_13
unknown

Not on your lists

comp(14521..15012)
DNA (492bp) protein (164aa)
14521..15012 - ( gc_cont=0.553)
AMDSBA1_31_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15169..16020)
DNA (852bp) protein (284aa)
NAD-dependent formate dehydrogenase iron-sulfur protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT93_9FIRM (db=UNIREF evalue=1.5e-110 bit_score=404.8 identity=68.5 coverage=96.12676056338029)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=187 to=198 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=143 to=154 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA1_31_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16050..17267)
DNA (1218bp) protein (406aa)
respiratory-chain NADH dehydrogenase domain 51 kDa subunit rbh
respiratory-chain NADH dehydrogenase domain 51 kDa subunit rbh
NADH dehydrogenase I chain F n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=H5S2J6_9NOCA (db=UNIREF evalue=6.0e-73 bit_score=280.4 identity=39.0 coverage=92.85714285714286)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=25 to=404 evalue=1.2e-127)
AMDSBA1_31_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17260..17709)
DNA (450bp) protein (150aa)
NADH-quinone oxidoreductase subunit F 2
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit n=8 Tax=Methylobacterium RepID=H1KNV6_METEX (db=UNIREF evalue=2.0e-13 bit_score=81.3 identity=32.6 coverage=87.33333333333333)
(db=HMMPfam db_id=PF01257 from=13 to=146 evalue=1.6e-30 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=4 to=149 evalue=2.4e-30 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBA1_31_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17660..19678)
DNA (2019bp) protein (673aa)
NAD-dependent formate dehydrogenase catalytic subunit (EC:1.7.99.4) rbh
Respiratory chain oxidoreductase n=2 Tax=Streptomyces RepID=D6EGT0_STRLI (db=UNIREF evalue=8.5e-17 bit_score=91.7 identity=60.3 coverage=81.81818181818183)
Formate dehydrogenase/DMSO reductase, domains 1-3 (db=superfamily db_id=SSF53706 from=9 to=86 evalue=4.3e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.740 from=12 to=87 evalue=3.9e-18)
AMDSBA1_31_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19743..20186)
DNA (444bp) protein (148aa)
hypothetical protein
PAS domain S-box n=1 Tax=Microvirga sp. WSM3557 RepID=I4YS57_9RHIZ (db=UNIREF evalue=1.2e-34 bit_score=151.8 identity=53.8 coverage=95.27027027027027)
PYP-like sensor domain (PAS domain) (db=superfamily db_id=SSF55785 from=18 to=135 evalue=2.3e-25)
no description (db=Gene3D db_id=G3DSA:3.30.450.20 from=11 to=134 evalue=9.6e-25)
AMDSBA1_31_20
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20405..22087)
DNA (1683bp) protein (561aa)
oxc; oxalyl-CoA decarboxylase Oxc (EC:4.1.1.8)
oxc; oxalyl-CoA decarboxylase Oxc (EC:4.1.1.8)
Oxalyl-CoA decarboxylase oxcA n=45 Tax=Mycobacterium tuberculosis complex RepID=A2VN47_MYCTU (db=UNIREF evalue=1.2e-201 bit_score=708.4 identity=63.1 coverage=98.57397504456328)
seg (db=Seg db_id=seg from=142 to=157)
AMDSBA1_31_21
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22271..23521)
DNA (1251bp) protein (417aa)
formyl-coenzyme A transferase (EC:2.8.3.16)
formyl-coenzyme A transferase (EC:2.8.3.16)
Formyl-coenzyme A transferase n=397 Tax=Enterobacteriaceae RepID=FCTA_ECO24 (db=UNIREF evalue=2.9e-187 bit_score=660.2 identity=73.8 coverage=99.52038369304557)
AMDSBA1_31_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24691..25641
DNA (951bp) protein (317aa)
LysR family transcriptional regulator
Transcriptional regulator n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X721_OXAFO (db=UNIREF evalue=1.3e-22 bit_score=112.8 identity=24.7 coverage=89.90536277602523)
seg (db=Seg db_id=seg from=38 to=48)
(db=HMMPfam db_id=PF03466 from=89 to=291 evalue=1.0e-33 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
AMDSBA1_31_23
unknown

Not on your lists

comp(25841..26134)
DNA (294bp) protein (98aa)
25841..26134 - ( gc_cont=0.537)
AMDSBA1_31_24
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26480..28357
DNA (1878bp) protein (626aa)
hypothetical protein AcelC_11866 n=1 Tax=Acetivibrio cellulolyticus CD2 RepID=UPI0001E2F634 (db=UNIREF evalue=2.7e-16 bit_score=92.8 identity=26.4 coverage=53.03514376996805)
seg (db=Seg db_id=seg from=166 to=174)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=233 to=625 evalue=4.9e-20)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=46 to=240 evalue=1.6e-12)
AMDSBA1_31_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28478..28852
DNA (375bp) protein (125aa)
transposase mutator type
Transposase n=8 Tax=Sulfobacillus acidophilus RepID=F8I751_SULAT (db=UNIREF evalue=2.6e-27 bit_score=127.1 identity=58.2 coverage=86.4)
Uncharacterized protein {ECO:0000313|EMBL:AEW04017.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA1_31_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28902..29189)
DNA (288bp) protein (96aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TZD1_9FIRM (db=UNIREF evalue=5.4e-41 bit_score=172.2 identity=86.3 coverage=97.91666666666666)
seg (db=Seg db_id=seg from=34 to=44)
Uncharacterized protein n=1 Tax=Sulfobacillus acidophilus (strain ATCC 700253 / DSM 10332 / NAL) RepID=G8TZD1_SULAD
AMDSBA1_31_27
unknown

Not on your lists

comp(29758..30210)
DNA (453bp) protein (151aa)
29758..30210 - ( gc_cont=0.514)
AMDSBA1_31_28
unknown

Not on your lists

comp(30197..30715)
DNA (519bp) protein (173aa)
30197..30715 - ( gc_cont=0.518)
AMDSBA1_31_29
unknown

Not on your lists

comp(30916..31197)
DNA (282bp) protein (94aa)
30916..31197 - ( gc_cont=0.525)
AMDSBA1_31_30
unknown

Not on your lists

comp(31280..31447)
DNA (168bp) protein (56aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=47)
seg (db=Seg db_id=seg from=5 to=26)
AMDSBA1_31_31
Desulfosporosinus orientis, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32196..36803
DNA (4608bp) protein (1536aa)
hypothetical protein
hypothetical protein
DNA helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AS85_9BACT (db=UNIREF evalue=5.2e-287 bit_score=993.4 identity=39.0 coverage=98.37239583333334)
Displaying items 1-30 of 36 in total

View Taxonomy