ggKbase home page

AMDSBA1_56

Alias: AMDSBA1_C55

Search features with annotation key words

Displaying items 1-30 of 41 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_56_1
Corynebacterium kroppenstedtii, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

304..1497
DNA (1194bp) protein (398aa)
sufB; ABC-type transport system involved in Fe-S cluster assembly permease
Cysteine desulfurase activator complex subunit SufB n=1 Tax=Azospirillum amazonense Y2 RepID=G1XWD5_9PROT (db=UNIREF evalue=3.0e-29 bit_score=135.2 identity=28.7 coverage=78.14070351758794)
Stabilizer of iron transporter SufD (db=superfamily db_id=SSF101960 from=14 to=316 evalue=4.8e-47)
(db=HMMPfam db_id=PF01458 from=161 to=299 evalue=4.5e-19 interpro_id=IPR000825 interpro_description=SUF system FeS cluster assembly, SufBD GO=Biological Process: iron-sulfur cluster assembly (GO:0016226))
AMDSBA1_56_2
unknown

Not on your lists

comp(1501..2160)
DNA (660bp) protein (220aa)
1501..2160 - ( gc_cont=0.517)
AMDSBA1_56_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2183..3466)
DNA (1284bp) protein (428aa)
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DUR7_9BACL (db=UNIREF evalue=9.8e-34 bit_score=150.2 identity=32.1 coverage=67.05607476635514)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=19 to=33)
AMDSBA1_56_4
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3531..4706)
DNA (1176bp) protein (392aa)
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Desulfosporosinus acidiphilus SJ4 RepID=I4D7K3_9FIRM (db=UNIREF evalue=1.9e-55 bit_score=222.2 identity=36.9 coverage=93.62244897959184)
seg (db=Seg db_id=seg from=12 to=19)
no description (db=Gene3D db_id=G3DSA:3.40.710.10 from=44 to=272 evalue=7.7e-42 interpro_id=IPR012338 interpro_description=Beta-lactamase/transpeptidase-like)
AMDSBA1_56_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4833..5180)
DNA (348bp) protein (116aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS50_9FIRM (db=UNIREF evalue=7.3e-16 bit_score=89.0 identity=43.3 coverage=82.75862068965517)
transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
AMDSBA1_56_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5240..5584)
DNA (345bp) protein (115aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS51_9FIRM (db=UNIREF evalue=1.1e-11 bit_score=75.1 identity=38.9 coverage=91.30434782608695)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
AMDSBA1_56_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5696..6580
DNA (885bp) protein (295aa)
oxyR; LysR family transcriptional regulator
Transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=D9VD63_9ACTO (db=UNIREF evalue=2.1e-14 bit_score=85.5 identity=27.1 coverage=91.18644067796609)
(db=HMMPfam db_id=PF03466 from=87 to=288 evalue=2.7e-45 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=85 to=294 evalue=7.1e-40)
AMDSBA1_56_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6900..8054
DNA (1155bp) protein (385aa)
NLP/P60 protein
NLP/P60 protein n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GKX9_9FIRM (db=UNIREF evalue=8.8e-34 bit_score=150.2 identity=28.2 coverage=95.32467532467533)
seg (db=Seg db_id=seg from=13 to=33)
seg (db=Seg db_id=seg from=167 to=188)
AMDSBA1_56_9
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8206..8763
DNA (558bp) protein (186aa)
pyridoxamine 5'-phosphate oxidase
Pyridoxamine phosphate oxidase family protein n=1 Tax=Aspergillus clavatus NRRL 1 RepID=A1CU28_ASPCL (db=UNIREF evalue=3.7e-30 bit_score=137.1 identity=41.0 coverage=94.6236559139785)
(db=HMMPfam db_id=PF01243 from=10 to=98 evalue=8.5e-10 interpro_id=IPR011576 interpro_description=Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO=Molecular Function: pyridoxamine-phosphate oxidase activity (GO:0004733), Molecular Function: FMN binding (GO:0010181), Biological Process: oxidation-reduction process (GO:0055114))
FMN-binding split barrel (db=superfamily db_id=SSF50475 from=7 to=133 evalue=5.5e-07 interpro_id=IPR009002 interpro_description=FMN-binding split barrel-related)
AMDSBA1_56_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(8781..9380)
DNA (600bp) protein (200aa)
NUDIX_BOX (db=PatternScan db_id=PS00893 from=95 to=116 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=26 to=194 evalue=2.1e-34 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=49 to=198 evalue=5.1e-24 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
(db=HMMPfam db_id=PF00293 from=67 to=180 evalue=1.7e-21 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA1_56_11
unknown

Not on your lists

comp(9497..9838)
DNA (342bp) protein (114aa)
9497..9838 - ( gc_cont=0.512)
AMDSBA1_56_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10057..12399)
DNA (2343bp) protein (781aa)
CoA-binding domain-containing protein
CoA-binding domain-containing protein
Acyl-CoA synthetase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I3J9_9ACTO (db=UNIREF evalue=3.6e-98 bit_score=365.2 identity=35.8 coverage=80.92189500640204)
seg (db=Seg db_id=seg from=710 to=719)
AMDSBA1_56_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12501..13673
DNA (1173bp) protein (391aa)
histone deacetylase
Acetoin utilization protein AcuC n=1 Tax=Brevibacterium mcbrellneri ATCC 49030 RepID=D4YMU0_9MICO (db=UNIREF evalue=4.1e-71 bit_score=274.2 identity=42.6 coverage=84.91048593350384)
seg (db=Seg db_id=seg from=107 to=119)
ACETOIN DEHYDROGENASE (db=HMMPanther db_id=PTHR10625:SF10 from=37 to=366 evalue=1.7e-117)
AMDSBA1_56_14

Not on your lists

comp(14295..15968)
DNA (1674bp) protein (558aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase, mitochondrial n=14 Tax=Saccharomyces RepID=ILV3_YEAST (db=UNIREF evalue=3.0e-147 bit_score=527.7 identity=48.9 coverage=98.02867383512545)
AMDSBA1_56_15
unknown

Not on your lists

comp(16299..16502)
DNA (204bp) protein (68aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=8 to=23)
AMDSBA1_56_16
Geomicrobium sp. JCM 19039, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16579..17229)
DNA (651bp) protein (217aa)
pyrophosphatase PpaX
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LXU2_9FIRM (db=UNIREF evalue=6.6e-10 bit_score=70.1 identity=30.5 coverage=93.08755760368663)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=206 evalue=4.9e-45 interpro_id=IPR023214 interpro_description=HAD-like domain)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=1 to=206 evalue=7.0e-30 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA1_56_17
Acidianus hospitalis, Acidianus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(17246..17533)
DNA (288bp) protein (96aa)
hypothetical protein
seg (db=Seg db_id=seg from=43 to=63)
UPI00001660E0 related cluster n=1 Tax=unknown RepID=UPI00001660E0
Uncharacterized protein {ECO:0000313|EMBL:AEE93828.1}; TaxID=933801 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Acidianus.;" source="Acidianus hospitalis (strain W1).;"
AMDSBA1_56_18
unknown

Not on your lists

comp(17726..17875)
DNA (150bp) protein (50aa)
17726..17875 - ( gc_cont=0.547)
AMDSBA1_56_19
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

comp(17896..18720)
DNA (825bp) protein (275aa)
histidinol phosphate phosphatase HisJ family
Histidinol-phosphatase n=2 Tax=Bacillaceae RepID=A3IC87_9BACI (db=UNIREF evalue=1.8e-25 bit_score=122.1 identity=29.0 coverage=89.81818181818181)
PHP domain-like (db=superfamily db_id=SSF89550 from=1 to=273 evalue=1.4e-33 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=1 to=258 evalue=1.1e-19)
AMDSBA1_56_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18790..19638)
DNA (849bp) protein (283aa)
cytochrome c oxidase caa3-type, assembly factor CtaG-like protein
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSR8_9FIRM (db=UNIREF evalue=7.6e-67 bit_score=259.6 identity=45.0 coverage=98.58657243816255)
transmembrane_regions (db=TMHMM db_id=tmhmm from=251 to=273)
transmembrane_regions (db=TMHMM db_id=tmhmm from=206 to=224)
AMDSBA1_56_21
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19741..20727)
DNA (987bp) protein (329aa)
amidase
Amidase n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAU0_CHLAD (db=UNIREF evalue=1.2e-55 bit_score=222.6 identity=43.0 coverage=95.13677811550151)
seg (db=Seg db_id=seg from=5 to=30)
Amidase signature (AS) enzymes (db=superfamily db_id=SSF75304 from=2 to=328 evalue=1.0e-58 interpro_id=IPR023631 interpro_description=Amidase signature domain)
AMDSBA1_56_22
unknown

Not on your lists

comp(21111..21254)
DNA (144bp) protein (48aa)
21111..21254 - ( gc_cont=0.521)
AMDSBA1_56_23
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22117..23073
DNA (957bp) protein (319aa)
thioredoxin reductase
thioredoxin reductase
Thioredoxin reductase n=19 Tax=Bacteroides RepID=A5ZGB8_9BACE (db=UNIREF evalue=5.9e-84 bit_score=316.6 identity=52.1 coverage=94.98432601880877)
AMDSBA1_56_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23376..23645
DNA (270bp) protein (90aa)
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TX76_9FIRM (db=UNIREF evalue=5.4e-35 bit_score=152.1 identity=76.1 coverage=96.66666666666667)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=51 to=62 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=2 to=88 evalue=6.5e-20)
AMDSBA1_56_25
Paenibacillus terrae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23699..24859)
DNA (1161bp) protein (387aa)
acyltransferase
Putative acyltransferase, putative n=1 Tax=Microscilla marina ATCC 23134 PF7_9BACT">RepID=A1ZPF7_9BACT (db=UNIREF evalue=1.0e-29 bit_score=136.7 identity=30.1 coverage=89.66408268733849)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
transmembrane_regions (db=TMHMM db_id=tmhmm from=207 to=229)
AMDSBA1_56_26
unknown

Not on your lists

comp(25412..25609)
DNA (198bp) protein (66aa)
25412..25609 - ( gc_cont=0.455)
AMDSBA1_56_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25737..26264)
DNA (528bp) protein (176aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=127 to=149)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
seg (db=Seg db_id=seg from=89 to=115)
AMDSBA1_56_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26287..27291)
DNA (1005bp) protein (335aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VYJ7_DYAFD (db=UNIREF evalue=1.1e-56 bit_score=226.1 identity=36.7 coverage=91.94029850746269)
seg (db=Seg db_id=seg from=84 to=98)
FAD/NAD(P)-binding domain (db=superfamily db_id=SSF51905 from=1 to=318 evalue=1.1e-39)
AMDSBA1_56_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27958..28854)
DNA (897bp) protein (299aa)
oxyR; LysR family transcriptional regulator
transmembrane_regions (db=TMHMM db_id=tmhmm from=218 to=240)
(db=HMMPfam db_id=PF03466 from=90 to=289 evalue=2.3e-43 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=88 to=297 evalue=5.4e-41)
AMDSBA1_56_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28993..30462
DNA (1470bp) protein (490aa)
major facilitator superfamily protein
Putative uncharacterized protein n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HRE9_9ACTO (db=UNIREF evalue=1.0e-26 bit_score=127.1 identity=24.7 coverage=83.46938775510205)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=100)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
Displaying items 1-30 of 41 in total

View Taxonomy