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AMDSBA1_57

Alias: AMDSBA1_C56

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_57_1
unknown

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comp(1..63)
-----------------
DNA (63bp)
protein (21aa)
1..63 - ( gc_cont=0.492)
AMDSBA1_57_2
Curtobacterium flaccumfaciens, Curtobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(923..1282)
-----------------
DNA (360bp)
protein (120aa)
prkA; putative phosphoribulokinase
Putative phosphoribulokinase n=1 Tax=Clavibacter michiganensis subsp. michiganensis NCPPB 382 RepID=A5CNY5_CLAM3 (db=UNIREF evalue=3.3e-11 bit_score=73.6 identity=35.0 coverage=95.83333333333334)
AMDSBA1_57_3
Brevibacillus sp. BC25, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1866..2606
-----------------
DNA (741bp)
protein (247aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZE40_BREBN (db=UNIREF evalue=3.3e-58 bit_score=230.7 identity=46.9 coverage=95.54655870445345)
seg (db=Seg db_id=seg from=84 to=97)
ComB-like (db=superfamily db_id=SSF142823 from=13 to=243 evalue=1.4e-40 interpro_id=IPR005238 interpro_description=2-phosphosulpholactate phosphatase GO=Molecular Function: magnesium ion binding (GO:0000287), Biological Process: coenzyme M biosynthetic process (GO:0019295), Molecular Function: 2-phosphosulfolactate phosphatase activity (GO:0050532))
AMDSBA1_57_4
unknown

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2671..2844
-----------------
DNA (174bp)
protein (58aa)
2671..2844 + ( gc_cont=0.460)
AMDSBA1_57_5
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3637..4581
-----------------
DNA (945bp)
protein (315aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YEU9_EXIS2 (db=UNIREF evalue=1.7e-22 bit_score=112.5 identity=28.1 coverage=77.77777777777779)
UPI0001E2D549 related cluster n=1 Tax=unknown RepID=UPI0001E2D549
AMDSBA1_57_6
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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4922..5725
-----------------
DNA (804bp)
protein (268aa)
major intrinsic protein
Putative uncharacterized protein n=1 Tax=Leptosphaeria maculans JN3 RepID=E5A234_LEPMJ (db=UNIREF evalue=9.9e-08 bit_score=63.2 identity=28.7 coverage=62.31343283582089)
seg (db=Seg db_id=seg from=194 to=226)
transmembrane_regions (db=TMHMM db_id=tmhmm from=202 to=224)
AMDSBA1_57_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6524..7819)
-----------------
DNA (1296bp)
protein (432aa)
enolase
enolase
Enolase 1 n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JM34_9GAMM (db=UNIREF evalue=1.0e-179 bit_score=635.2 identity=72.4 coverage=99.53703703703704)
seg (db=Seg db_id=seg from=118 to=126)
AMDSBA1_57_8
unknown

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8460..8645
-----------------
DNA (186bp)
protein (62aa)
8460..8645 + ( gc_cont=0.505)
AMDSBA1_57_9
unknown

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8695..9429
-----------------
DNA (735bp)
protein (245aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=139 to=150)
seg (db=Seg db_id=seg from=31 to=54)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=6.0)
AMDSBA1_57_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

9838..11157
-----------------
DNA (1320bp)
protein (440aa)
glutamate synthase (NADPH) (EC:1.4.1.13)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SNM0_9BACT (db=UNIREF evalue=3.3e-101 bit_score=374.4 identity=46.3 coverage=97.72727272727273)
GLUTAMATE SYNTHASE (db=HMMPanther db_id=PTHR11938:SF9 from=6 to=438 evalue=3.3e-101)
FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE (db=HMMPanther db_id=PTHR11938 from=6 to=438 evalue=3.3e-101)
originally thought to be involved as an Flavoprotein disulfide reductase, but does not phylogenetically agree Nicholas Justice (1/19/13)
AMDSBA1_57_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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11157..12098
-----------------
DNA (942bp)
protein (314aa)
pyruvate/ketoisovalerate oxidoreductase subunit gamma (EC:1.2.7.7 1.2.7.1)
Pyruvate synthase subunit porD n=4 Tax=Methanocaldococcus RepID=PORD_METJA (db=UNIREF evalue=1.4e-08 bit_score=66.2 identity=38.6 coverage=25.796178343949045)
seg (db=Seg db_id=seg from=65 to=80)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=247 to=258 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA1_57_12
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

12095..13324
-----------------
DNA (1230bp)
protein (410aa)
pyruvate synthase (EC:1.2.7.1)
Pyruvate synthase subunit porA n=7 Tax=Thermotoga RepID=PORA_THEMA (db=UNIREF evalue=2.2e-99 bit_score=368.2 identity=51.6 coverage=91.46341463414635)
seg (db=Seg db_id=seg from=74 to=87)
seg (db=Seg db_id=seg from=239 to=256)
AMDSBA1_57_13
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

13312..14367
-----------------
DNA (1056bp)
protein (352aa)
pyruvate synthase (EC:1.2.7.1)
pyruvate synthase (EC:1.2.7.1)
Thiamine pyrophosphate enzyme domain protein TPP-binding protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YE33_METS5 (db=UNIREF evalue=1.3e-55 bit_score=222.6 identity=42.5 coverage=78.97727272727273)
Thiamin diphosphate-binding fold (THDP-binding) (db=superfamily db_id=SSF52518 from=14 to=303 evalue=2.6e-70)
AMDSBA1_57_14
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

15138..15614
-----------------
DNA (477bp)
protein (159aa)
putative membrane protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=148)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
AMDSBA1_57_15
unknown

Not on your lists

comp(15878..16021)
-----------------
DNA (144bp)
protein (48aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBA1_57_16
unknown

Not on your lists

comp(17109..18470)
-----------------
DNA (1362bp)
protein (454aa)
seg (db=Seg db_id=seg from=62 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
TAT_signal_seq: Tat (twin-arginine tra (db=HMMTigr db_id=TIGR01409 from=69 to=97 evalue=0.1 interpro_id=IPR019546 interpro_description=Twin-arginine translocation pathway, signal sequence, bacterial/archaeal)
AMDSBA1_57_17
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18467..19036)
-----------------
DNA (570bp)
protein (190aa)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=18 to=177 evalue=2.6e-27 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=113 evalue=1.8e-11 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=109 to=179 evalue=2.0e-11 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct
(db=HMMPfam db_id=PF04542 from=23 to=91 evalue=6.7e-10 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Displaying 17 items

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