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AMDSBA3_19

Alias: AMDSBA3_C18

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_19_1
Actinobaculum massiliense, Actinobaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(33..206)
-----------------
DNA (174bp)
protein (58aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=6 to=54 evalue=6.8e-07 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
Excisionase family DNA binding domain-containing protein n=1 Tax=Actinobaculum massiliae ACS-171-V-Col2 RepID=K9F2E8_9ACTO
AMDSBA3_19_2
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

316..867
-----------------
DNA (552bp)
protein (184aa)
seg (db=Seg db_id=seg from=10 to=26)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=3 to=72 evalue=5.7e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=HMMSmart db_id=SM00530 from=11 to=66 evalue=4.6e-14 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
(db=HMMPfam db_id=PF01381 from=12 to=66 evalue=5.7e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
AMDSBA3_19_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1174..1365)
-----------------
DNA (192bp)
protein (64aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U131_9FIRM (db=UNIREF evalue=4.8e-09 bit_score=65.5 identity=55.2 coverage=89.0625)
seg (db=Seg db_id=seg from=21 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
AMDSBA3_19_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1340..2068)
-----------------
DNA (729bp)
protein (243aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U130_9FIRM (db=UNIREF evalue=6.7e-96 bit_score=355.9 identity=74.0 coverage=97.53086419753086)
hypothetical protein rbh
hypothetical protein rbh
seg (db=Seg db_id=seg from=66 to=79)
AMDSBA3_19_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2109..2702)
-----------------
DNA (594bp)
protein (198aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=4 Tax=Lactobacillus jensenii RepID=C4VNP9_9LACO (db=UNIREF evalue=7.0e-27 bit_score=126.3 identity=37.8 coverage=95.95959595959596)
HAM1 PROTEIN-RELATED (db=HMMPanther db_id=PTHR11067:SF1 from=1 to=192 evalue=9.3e-53)
INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN (db=HMMPanther db_id=PTHR11067 from=1 to=192 evalue=9.3e-53 interpro_id=IPR002637 interpro_description=Ham1-like protein GO=Molecular Function: hydrolase activity (GO:0016787))
AMDSBA3_19_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2692..3429)
-----------------
DNA (738bp)
protein (246aa)
RNAse PH (EC:2.7.7.56) rbh
RNase PH n=1 Tax=Tistrella mobilis KA081020-065 RepID=I3TRC1_9PROT (db=UNIREF evalue=1.9e-58 bit_score=231.5 identity=50.0 coverage=95.52845528455285)
seg (db=Seg db_id=seg from=218 to=229)
RIBONUCLEASE_PH (db=PatternScan db_id=PS01277 from=116 to=129 evalue=0.0 interpro_id=IPR018336 interpro_description=Ribonuclease PH, conserved site)
AMDSBA3_19_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3890..4354)
-----------------
DNA (465bp)
protein (155aa)
SsrA-binding protein
SsrA-binding protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J8D6_9FIRM (db=UNIREF evalue=2.0e-37 bit_score=161.0 identity=51.0 coverage=97.41935483870968)
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=5 to=132 evalue=9.4e-51 interpro_id=IPR023620 interpro_description=Small protein B)
SSRP (db=PatternScan db_id=PS01317 from=26 to=38 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
AMDSBA3_19_8
unknown

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4465..4653
-----------------
DNA (189bp)
protein (63aa)
4465..4653 + ( gc_cont=0.508)
AMDSBA3_19_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4627..5010)
-----------------
DNA (384bp)
protein (128aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I558_SULAT (db=UNIREF evalue=4.7e-16 bit_score=89.7 identity=42.1 coverage=81.25)
seg (db=Seg db_id=seg from=36 to=46)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I558_SULAT
AMDSBA3_19_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5055..7130)
-----------------
DNA (2076bp)
protein (692aa)
rnr; ribonuclease R rbh
rnr; ribonuclease R rbh
Ribonuclease R n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X6W6_OXAFO (db=UNIREF evalue=5.6e-95 bit_score=354.4 identity=37.7 coverage=80.34682080924856)
AMDSBA3_19_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7307..7543)
-----------------
DNA (237bp)
protein (79aa)
preprotein translocase subunit SecG
Preprotein translocase, SecG subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8U0N4_9FIRM (db=UNIREF evalue=3.8e-16 bit_score=89.4 identity=58.1 coverage=89.87341772151899)
seg (db=Seg db_id=seg from=27 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
AMDSBA3_19_12
unknown

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comp(7762..9192)
-----------------
DNA (1431bp)
protein (477aa)
seg (db=Seg db_id=seg from=366 to=379)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
AMDSBA3_19_13
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

9467..10564
-----------------
DNA (1098bp)
protein (366aa)
Putative glycosyl hydrolase, BNR repeat n=2 Tax=Leptospirillum sp. Group II RepID=A3EPG2_9BACT (db=UNIREF evalue=1.6e-08 bit_score=66.2 identity=24.7 coverage=71.03825136612022)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=172 to=180)
seg (db=Seg db_id=seg from=249 to=260)
AMDSBA3_19_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10672..11331)
-----------------
DNA (660bp)
protein (220aa)
ahpC; peroxiredoxin
Peroxiredoxin n=1 Tax=Methanocella paludicola SANAE RepID=D1Z0A1_METPS (db=UNIREF evalue=2.7e-59 bit_score=234.2 identity=53.2 coverage=91.36363636363637)
PEROXIREDOXIN-RELATED (db=HMMPanther db_id=PTHR10681:SF10 from=8 to=207 evalue=8.0e-97)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=8 to=207 evalue=8.0e-97)
AMDSBA3_19_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11399..12421)
-----------------
DNA (1023bp)
protein (341aa)
Haloacid dehalogenase domain protein hydrolase n=2 Tax=Sulfobacillus acidophilus RepID=G8U0N1_9FIRM (db=UNIREF evalue=1.0e-134 bit_score=485.3 identity=71.3 coverage=97.36070381231671)
haloacid dehalogenase domain-containing protein hydrolase rbh
haloacid dehalogenase domain-containing protein hydrolase rbh
AMDSBA3_19_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12418..13686)
-----------------
DNA (1269bp)
protein (423aa)
enolase (EC:4.2.1.11) rbh
enolase (EC:4.2.1.11) rbh
Enolase n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=ENO_ALKOO (db=UNIREF evalue=6.8e-136 bit_score=489.6 identity=59.5 coverage=98.58156028368793)
seg (db=Seg db_id=seg from=114 to=128)
AMDSBA3_19_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13688..15226)
-----------------
DNA (1539bp)
protein (513aa)
gpm; phosphoglycerate mutase
gpm; phosphoglycerate mutase
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=GPMI_ACHLI (db=UNIREF evalue=2.8e-99 bit_score=368.2 identity=40.3 coverage=97.85575048732943)
AMDSBA3_19_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15223..15996)
-----------------
DNA (774bp)
protein (258aa)
seg (db=Seg db_id=seg from=228 to=240)
TIM_1 (db=PatternScan db_id=PS00171 from=168 to=178 evalue=0.0 interpro_id=IPR020861 interpro_description=Triosephosphate isomerase, active site GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807))
Triosephosphate isomerase (TIM) (db=superfamily db_id=SSF51351 from=1 to=256 evalue=3.9e-75 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
TRIOSEPHOSPHATE ISOMERASE (db=HMMPanther db_id=PTHR21139 from=1 to=253 evalue=1.5e-72 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
AMDSBA3_19_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16001..17200)
-----------------
DNA (1200bp)
protein (400aa)
pgk; phosphoglycerate kinase rbh
pgk; phosphoglycerate kinase rbh
Phosphoglycerate kinase n=2 Tax=Dictyoglomus RepID=PGK_DICT6 (db=UNIREF evalue=1.8e-98 bit_score=365.2 identity=47.2 coverage=97.25)
seg (db=Seg db_id=seg from=348 to=367)
AMDSBA3_19_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17193..18197)
-----------------
DNA (1005bp)
protein (335aa)
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12) rbh
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12) rbh
Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=F8I548_SULAT (db=UNIREF evalue=2.6e-146 bit_score=523.9 identity=76.3 coverage=99.1044776119403)
seg (db=Seg db_id=seg from=185 to=201)
AMDSBA3_19_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18331..18987)
-----------------
DNA (657bp)
protein (219aa)
phosphate uptake regulator PhoU
phosphate uptake regulator PhoU
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AVP5_9FIRM (db=UNIREF evalue=5.4e-44 bit_score=183.3 identity=42.8 coverage=97.71689497716895)
phoU_full: phosphate transport system regul (db=HMMTigr db_id=TIGR02135 from=4 to=214 evalue=2.7e-83 interpro_id=IPR008170 interpro_description=PhoU)
AMDSBA3_19_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19030..19788)
-----------------
DNA (759bp)
protein (253aa)
phosphate ABC transporter ATP-binding protein (EC:3.6.3.27) rbh
ABC transporter, ATP-binding protein, putative n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R4E1_9RHOB (db=UNIREF evalue=1.1e-35 bit_score=156.0 identity=40.2 coverage=93.2806324110672)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=249 evalue=4.9e-126)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=148 to=162 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA3_19_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19805..20632)
-----------------
DNA (828bp)
protein (276aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
seg (db=Seg db_id=seg from=102 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA3_19_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20641..21492)
-----------------
DNA (852bp)
protein (284aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
AMDSBA3_19_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21489..22277)
-----------------
DNA (789bp)
protein (263aa)
phosphate ABC transporter substrate-binding protein
Phosphate ABC transporter substrate-binding protein, PhoT family n=2 Tax=Sulfobacillus acidophilus RepID=G8U0M1_9FIRM (db=UNIREF evalue=5.4e-59 bit_score=233.4 identity=46.0 coverage=97.71863117870723)
seg (db=Seg db_id=seg from=55 to=63)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=17 to=252 evalue=4.8e-34)
AMDSBA3_19_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22277..23665)
-----------------
DNA (1389bp)
protein (463aa)
multi-sensor signal transduction histidine kinase rbh
multi-sensor signal transduction histidine kinase rbh
Multi-sensor signal transduction histidine kinase n=2 Tax=Sulfobacillus acidophilus RepID=G8U0M0_9FIRM (db=UNIREF evalue=1.2e-181 bit_score=641.7 identity=71.9 coverage=98.0561555075594)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
AMDSBA3_19_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23662..24342)
-----------------
DNA (681bp)
protein (227aa)
vicR; two component transcriptional regulator rbh
Putative two-component system response regulator n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TQY0_9MICO (db=UNIREF evalue=4.2e-07 bit_score=60.8 identity=29.1 coverage=73.568281938326)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=2 to=121 evalue=9.6e-36)
no description (db=HMMSmart db_id=SM00448 from=2 to=112 evalue=5.6e-48 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_19_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24365..25186)
-----------------
DNA (822bp)
protein (274aa)
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Lysinibacillus fusiformis ZC1 RepID=D7WUF2_9BACI (db=UNIREF evalue=1.8e-25 bit_score=122.1 identity=34.7 coverage=94.8905109489051)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=3 to=197 evalue=1.1e-07)
(db=HMMPfam db_id=PF03780 from=213 to=266 evalue=9.2e-06 interpro_id=IPR005531 interpro_description=Alkaline shock protein Asp23)
AMDSBA3_19_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25188..26114)
-----------------
DNA (927bp)
protein (309aa)
ghrA; 2-hydroxyacid dehydrogenase rbh
Hydroxypyruvate reductase n=2 Tax=Sulfobacillus acidophilus RepID=G8U0L7_9FIRM (db=UNIREF evalue=3.9e-101 bit_score=373.6 identity=61.4 coverage=98.70550161812298)
D_2_HYDROXYACID_DH_3 (db=PatternScan db_id=PS00671 from=212 to=228 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_19_30
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(26114..27208)
-----------------
DNA (1095bp)
protein (365aa)
peptidase M20
Peptidase dimerization domain-containing protein n=2 Tax=Saccharomonospora azurea RepID=H0K1C0_9PSEU (db=UNIREF evalue=4.6e-56 bit_score=224.2 identity=41.2 coverage=95.61643835616438)
seg (db=Seg db_id=seg from=212 to=225)
seg (db=Seg db_id=seg from=135 to=154)
Displaying items 1-30 of 46 in total

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