Alias: AMDSBA4_C86
| name | lists | location/seqs | functional annotations | notes |
|---|---|---|---|---|
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AMDSBA4_87_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(3..368)
----------------- DNA (366bp) protein (122aa) |
BSCG--ribosomal--protein--L22
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=RL22_SYMTH (db=UNIREF evalue=1.4e-30 bit_score=137.9 identity=62.7 coverage=89.34426229508196)
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=91 to=115 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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AMDSBA4_87_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(396..680)
----------------- DNA (285bp) protein (95aa) |
BSCG--ribosomal--protein--S19
30S ribosomal protein S19
30S ribosomal protein S19 n=5 Tax=Actinomycetales RepID=RS19_ACIC1 (db=UNIREF evalue=3.3e-30 bit_score=136.3 identity=66.7 coverage=93.6842105263158)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
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AMDSBA4_87_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(692..1519)
----------------- DNA (828bp) protein (276aa) |
BSCG--ribosomal--protein--L2
50S ribosomal protein L2
50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RL2_ACIC5 (db=UNIREF evalue=1.0e-92 bit_score=345.5 identity=62.0 coverage=98.18840579710145)
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AMDSBA4_87_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(1808..2425)
----------------- DNA (618bp) protein (206aa) |
BSCG--ribosomal--protein--L4
50S ribosomal protein L4
50S ribosomal protein L4 n=2 Tax=Thermosipho RepID=RL4_THEAB (db=UNIREF evalue=1.7e-36 bit_score=158.3 identity=37.9 coverage=98.54368932038835)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=15 to=204 evalue=1.5e-75)
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AMDSBA4_87_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(2436..3086)
----------------- DNA (651bp) protein (217aa) |
BSCG--ribosomal--protein--L3
50S ribosomal protein L3
50S ribosomal protein L3 n=3 Tax=Clostridium acetobutylicum RepID=RL3_CLOAB (db=UNIREF evalue=1.8e-52 bit_score=211.5 identity=48.3 coverage=94.47004608294931)
seg (db=Seg db_id=seg from=141 to=156)
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AMDSBA4_87_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
3100..3408
----------------- DNA (309bp) protein (103aa) |
BSCG--ribosomal--protein--S10
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AMDSBA4_87_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(3415..4617)
----------------- DNA (1203bp) protein (401aa) |
Elongation factor Tu 1 n=6 Tax=Peptococcaceae RepID=EFTU1_PELTS (db=UNIREF evalue=3.8e-197 bit_score=693.0 identity=82.4 coverage=99.00249376558602)
protein translation elongation factor Tu (EF-TU) (db=KEGG evalue=1.2e-28 bit_score=132.9 identity=65.6 coverage=23.44139650872818)
seg (db=Seg db_id=seg from=386 to=397)
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AMDSBA4_87_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(4657..6732)
----------------- DNA (2076bp) protein (692aa) |
elongation factor G; K02355 elongation factor G (db=KEGG evalue=4.0e-271 bit_score=939.1 identity=66.6 coverage=99.13294797687861)
Elongation factor G 1 n=2 Tax=Geobacter sulfurreducens RepID=EFG1_GEOSL (db=UNIREF evalue=1.2e-185 bit_score=655.6 identity=49.6 coverage=98.69942196531792)
seg (db=Seg db_id=seg from=605 to=613)
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AMDSBA4_87_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(6751..7221)
----------------- DNA (471bp) protein (157aa) |
BSCG--ribosomal--protein--S7
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 (db=KEGG evalue=5.4e-46 bit_score=189.1 identity=59.0 coverage=98.72611464968153)
30S ribosomal protein S7, chloroplastic n=1 Tax=Chaetosphaeridium globosum RepID=RR7_CHAGL (db=UNIREF evalue=2.3e-33 bit_score=147.5 identity=42.6 coverage=98.08917197452229)
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=20 to=46 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
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AMDSBA4_87_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(7232..7618)
----------------- DNA (387bp) protein (129aa) |
BSCG--ribosomal--protein--S12
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 (db=KEGG evalue=2.6e-46 bit_score=189.9 identity=76.0 coverage=93.02325581395348)
30S ribosomal protein S12, chloroplastic n=1 Tax=Chara vulgaris RepID=RR12_CHAVU (db=UNIREF evalue=2.4e-44 bit_score=183.7 identity=75.2 coverage=93.02325581395348)
seg (db=Seg db_id=seg from=79 to=94)
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AMDSBA4_87_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(7623..7901)
----------------- DNA (279bp) protein (93aa) |
Ribosomal protein L7Ae/L30e/S12e/Gadd45 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXF1_9FIRM (db=UNIREF evalue=1.1e-17 bit_score=94.7 identity=50.6 coverage=90.32258064516128)
L30e-like (db=superfamily db_id=SSF55315 from=7 to=87 evalue=2.1e-12)
(db=HMMPfam db_id=PF01248 from=7 to=81 evalue=1.7e-11 interpro_id=IPR004038 interpro_description=Ribosomal protein L7Ae/L30e/S12e/Gadd45)
no description (db=Gene3D db_id=G3DSA:3.30.1330.30 from=7 to=81 evalue=0.00011)
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AMDSBA4_87_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(7992..11033)
----------------- DNA (3042bp) protein (1014aa) |
DNA-directed RNA polymerase, beta' subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] (db=KEGG evalue=2.0e-255 bit_score=887.5 identity=53.9 coverage=82.24852071005917)
DNA-directed RNA polymerase subunit beta' C-terminal section n=1 Tax=Chlamydomonas reinhardtii RepID=RPC2B_CHLRE (db=UNIREF evalue=3.2e-83 bit_score=315.8 identity=54.4 coverage=29.289940828402365)
seg (db=Seg db_id=seg from=880 to=891)
seg (db=Seg db_id=seg from=115 to=128)
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AMDSBA4_87_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(11480..15052)
----------------- DNA (3573bp) protein (1191aa) |
DNA-directed RNA polymerase subunit beta n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RPOB_ALKMQ (db=UNIREF evalue=0.0 bit_score=1238.0 identity=67.8 coverage=77.16204869857263)
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] (db=KEGG evalue=0.0 bit_score=1150.2 identity=71.1 coverage=66.91855583543241)
seg (db=Seg db_id=seg from=1166 to=1189)
seg (db=Seg db_id=seg from=1089 to=1102)
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AMDSBA4_87_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(15225..15611)
----------------- DNA (387bp) protein (129aa) |
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 (db=KEGG evalue=4.9e-37 bit_score=159.1 identity=67.5 coverage=91.47286821705426)
50S ribosomal protein L7/L12 n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=RL7_ACIC5 (db=UNIREF evalue=1.4e-23 bit_score=114.8 identity=52.3 coverage=96.89922480620154)
seg (db=Seg db_id=seg from=34 to=59)
seg (db=Seg db_id=seg from=103 to=125)
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AMDSBA4_87_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(15639..16169)
----------------- DNA (531bp) protein (177aa) |
BSCG--ribosomal--protein--L10
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 (db=KEGG evalue=2.9e-32 bit_score=143.7 identity=47.0 coverage=83.61581920903954)
50S ribosomal protein L10 n=1 Tax=Clostridium cellulovorans 743B RepID=D9SXB0_CLOC7 (db=UNIREF evalue=8.2e-27 bit_score=125.9 identity=40.3 coverage=83.61581920903954)
coiled-coil (db=Coil db_id=coil from=156 to=177 evalue=NA)
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AMDSBA4_87_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(16360..17403)
----------------- DNA (1044bp) protein (348aa) |
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] (db=KEGG evalue=7.7e-45 bit_score=186.4 identity=38.6 coverage=85.34482758620689)
D-alanine--D-alanine ligase n=2 Tax=Bartonella bacilliformis RepID=DDL_BARBK (db=UNIREF evalue=1.0e-44 bit_score=186.4 identity=38.6 coverage=85.34482758620689)
seg (db=Seg db_id=seg from=53 to=71)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=93 to=104 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site)
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AMDSBA4_87_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(17578..18282)
----------------- DNA (705bp) protein (235aa) |
BSCG--ribosomal--protein--L1
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 (db=KEGG evalue=7.2e-87 bit_score=325.5 identity=69.5 coverage=94.46808510638299)
50S ribosomal protein L1 n=4 Tax=Deinococcus RepID=RL1_DEIDV (db=UNIREF evalue=4.7e-62 bit_score=243.4 identity=56.8 coverage=92.76595744680851)
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AMDSBA4_87_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(18331..18756)
----------------- DNA (426bp) protein (142aa) |
BSCG--ribosomal--protein--L11
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 (db=KEGG evalue=3.6e-49 bit_score=199.5 identity=71.8 coverage=98.59154929577466)
50S ribosomal protein L11, chloroplastic n=1 Tax=Cyanidium caldarium RepID=RK11_CYACA (db=UNIREF evalue=1.2e-39 bit_score=168.3 identity=55.4 coverage=97.1830985915493)
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=141 evalue=6.6e-97 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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AMDSBA4_87_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(18802..19332)
----------------- DNA (531bp) protein (177aa) |
Transcription antitermination protein nusG n=2 Tax=Leptospirillum sp. Group II RepID=A3EVT3_9BACT (db=UNIREF evalue=7.2e-39 bit_score=166.0 identity=44.9 coverage=97.74011299435028)
transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG (db=KEGG evalue=5.5e-23 bit_score=112.8 identity=34.5 coverage=97.74011299435028)
seg (db=Seg db_id=seg from=43 to=60)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=5 to=175 evalue=5.2e-80 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Biological Process: regulation of transcription elongation, DNA-dependent (GO:0032784))
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AMDSBA4_87_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(19389..19604)
----------------- DNA (216bp) protein (72aa) |
preprotein translocase SecE subunit; K03073 preprotein translocase subunit SecE (db=KEGG evalue=2.7e-08 bit_score=62.8 identity=44.4 coverage=95.83333333333334)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=18 to=46 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
(db=HMMPfam db_id=PF00584 from=14 to=69 evalue=9.4e-21 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
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AMDSBA4_87_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(19889..20245)
----------------- DNA (357bp) protein (119aa) |
seg (db=Seg db_id=seg from=5 to=15)
Cytochrome c (db=superfamily db_id=SSF46626 from=1 to=112 evalue=1.4e-16 interpro_id=IPR009056 interpro_description=Cytochrome c domain GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
no description (db=Gene3D db_id=G3DSA:1.10.760.10 from=34 to=116 evalue=5.9e-08 interpro_id=IPR009056 interpro_description=Cytochrome c domain GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
(db=HMMPfam db_id=PF00034 from=39 to=112 evalue=1.8e-07 interpro_id=IPR003088 interpro_description=Cytochrome c, class I GO=Molecular Function: iron ion binding (GO:0005506), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: heme binding (GO:0020037))
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AMDSBA4_87_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(20436..20900)
----------------- DNA (465bp) protein (155aa) |
ATPase central domain-containing protein (db=KEGG evalue=9.3e-51 bit_score=204.9 identity=67.1 coverage=95.48387096774194)
Protein CbbX n=6 Tax=Rhodobacter sphaeroides RepID=CBBX_RHOSH (db=UNIREF evalue=1.6e-47 bit_score=194.5 identity=66.4 coverage=94.83870967741936)
CBXCFQXSUPER (db=FPrintScan db_id=PR00819 from=46 to=65 evalue=3.0e-31 interpro_id=IPR000641 interpro_description=CbxX/CfqX GO=Molecular Function: ATP binding (GO:0005524))
CBXCFQXSUPER (db=FPrintScan db_id=PR00819 from=103 to=115 evalue=3.0e-31 interpro_id=IPR000641 interpro_description=CbxX/CfqX GO=Molecular Function: ATP binding (GO:0005524))
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