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AMDSBA5_21

Alias: AMDSBA5_C20

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_21_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

351..1268
-----------------
DNA (918bp)
protein (306aa)
MIP family channel protein rbh
MIP family channel protein rbh
MIP family channel protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSQ9_9FIRM (db=UNIREF evalue=5.2e-130 bit_score=469.5 identity=73.8 coverage=96.07843137254902)
seg (db=Seg db_id=seg from=26 to=43)
AMDSBA5_21_2
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

1265..2773
-----------------
DNA (1509bp)
protein (503aa)
glycerol kinase (EC:2.7.1.30)
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=2 Tax=Geobacter RepID=GLPK_GEOBB (db=UNIREF evalue=2.6e-150 bit_score=537.7 identity=53.5 coverage=97.4155069582505)
AMDSBA5_21_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2785..3798
-----------------
DNA (1014bp)
protein (338aa)
dihydroxyacetone kinase DhaK subunit (EC:2.7.1.121)
dihydroxyacetone kinase DhaK subunit (EC:2.7.1.121)
Dihydroxyacetone kinase (DakA), putative n=1 Tax=Aspergillus clavatus NRRL 1 RepID=A1CBL3_ASPCL (db=UNIREF evalue=5.5e-48 bit_score=197.2 identity=36.4 coverage=98.22485207100591)
seg (db=Seg db_id=seg from=42 to=63)
AMDSBA5_21_4
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

3788..4420
-----------------
DNA (633bp)
protein (211aa)
dihydroxyacetone kinase DhaL subunit (EC:2.7.1.121)
Dihydroxyacetone kinase, L subunit n=15 Tax=Streptococcus suis RepID=B9WXE5_STRSU (db=UNIREF evalue=2.2e-26 bit_score=124.8 identity=38.2 coverage=84.36018957345972)
seg (db=Seg db_id=seg from=77 to=93)
dha_L_ycgS: dihydroxyacetone kinase, L sub (db=HMMTigr db_id=TIGR02365 from=6 to=204 evalue=4.0e-52 interpro_id=IPR012737 interpro_description=Dihydroxyacetone kinase, subunit L GO=Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
AMDSBA5_21_5
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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4417..4803
-----------------
DNA (387bp)
protein (129aa)
dihydroxyacetone kinase DhaM subunit (EC:2.7.1.121)
Putative dihydroxyacetone kinase phosphotransfer protein n=1 Tax=Streptomyces ambofaciens ATCC 23877 RepID=A3KJM9_STRAM (db=UNIREF evalue=4.8e-08 bit_score=63.2 identity=33.6 coverage=97.67441860465115)
seg (db=Seg db_id=seg from=112 to=122)
(db=HMMPfam db_id=PF03610 from=3 to=115 evalue=5.4e-15 interpro_id=IPR004701 interpro_description=Phosphotransferase system, fructose subfamily IIA component GO=Biological Process: phosphoenolpyruvate-dependent sugar phosphotransferase system (GO:0009401), Cellular Component: integral to membrane (GO:0016021))
AMDSBA5_21_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4887..5465)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS22_9FIRM (db=UNIREF evalue=1.2e-34 bit_score=152.1 identity=47.6 coverage=83.93782383419689)
Cupredoxins (db=superfamily db_id=SSF49503 from=63 to=179 evalue=3.6e-06 interpro_id=IPR008972 interpro_description=Cupredoxin)
(db=HMMPfam db_id=PF00116 from=113 to=177 evalue=7.4e-05 interpro_id=IPR002429 interpro_description=Cytochrome c oxidase subunit II C-terminal GO=Molecular Function: cytochrome-c oxidase activity (GO:0004129), Molecular Function: copper ion binding (GO:0005507), Cellular Component: membrane (GO:0016020))
AMDSBA5_21_7
unknown

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5778..6077
-----------------
DNA (300bp)
protein (100aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
AMDSBA5_21_8
unknown

Not on your lists

6080..6253
-----------------
DNA (174bp)
protein (58aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
AMDSBA5_21_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6383..7972
-----------------
DNA (1590bp)
protein (530aa)
amino acid permease-associated protein
Amino acid transporter n=1 Tax=Metallosphaera yellowstonensis MK1 RepID=H2C7I2_9CREN (db=UNIREF evalue=1.5e-92 bit_score=345.9 identity=37.2 coverage=94.52830188679245)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=426 to=445)
AMDSBA5_21_10
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8083..8562
-----------------
DNA (480bp)
protein (160aa)
Adenine nucleotide alpha hydrolases-like (db=superfamily db_id=SSF52402 from=1 to=157 evalue=2.6e-22)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=154 evalue=4.9e-19 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
(db=HMMPfam db_id=PF00582 from=1 to=155 evalue=1.8e-18 interpro_id=IPR006016 interpro_description=UspA GO=Biological Process: response to stress (GO:0006950))
UNVRSLSTRESS (db=FPrintScan db_id=PR01438 from=115 to=127 evalue=2.0e-11 interpro_id=IPR006015 interpro_description=Universal stress protein A)
AMDSBA5_21_11
Owenweeksia hongkongensis, Owenweeksia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

8928..9317
-----------------
DNA (390bp)
protein (130aa)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=1 to=107 evalue=3.6e-11)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=9 to=117 evalue=3.2e-22 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
no description (db=Gene3D db_id=G3DSA:2.60.40.790 from=1 to=120 evalue=1.6e-15)
(db=HMMPfam db_id=PF00011 from=23 to=112 evalue=6.0e-15 interpro_id=IPR002068 interpro_description=Heat shock protein Hsp20)
AMDSBA5_21_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9512..10423
-----------------
DNA (912bp)
protein (304aa)
Acetamidase/Formamidase
Acetamidase/Formamidase
Acetamidase/Formamidase n=2 Tax=Sulfobacillus acidophilus RepID=G8TTL5_9FIRM (db=UNIREF evalue=2.2e-128 bit_score=464.2 identity=72.4 coverage=98.68421052631578)
AMDSBA5_21_13
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10640..11026
-----------------
DNA (387bp)
protein (129aa)
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY (db=HMMPanther db_id=PTHR11527 from=1 to=106 evalue=7.8e-10)
HSP20-like chaperones (db=superfamily db_id=SSF49764 from=8 to=116 evalue=2.5e-22 interpro_id=IPR008978 interpro_description=HSP20-like chaperone)
(db=HMMPfam db_id=PF00011 from=22 to=111 evalue=3.3e-15 interpro_id=IPR002068 interpro_description=Heat shock protein Hsp20)
no description (db=Gene3D db_id=G3DSA:2.60.40.790 from=1 to=119 evalue=1.3e-14)
AMDSBA5_21_14
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11317..12705)
-----------------
DNA (1389bp)
protein (463aa)
ywoD; efflux transporter
Drug transporter (Fragment) n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY21_9GAMM (db=UNIREF evalue=1.2e-24 bit_score=120.2 identity=27.3 coverage=58.09935205183585)
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
transmembrane_regions (db=TMHMM db_id=tmhmm from=364 to=386)
AMDSBA5_21_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12987..13709
-----------------
DNA (723bp)
protein (241aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I2V8_SULAT (db=UNIREF evalue=2.0e-84 bit_score=317.8 identity=65.7 coverage=98.7551867219917)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=222 to=239)
AMDSBA5_21_16
unknown

Not on your lists

13706..13897
-----------------
DNA (192bp)
protein (64aa)
13706..13897 + ( gc_cont=0.490)
AMDSBA5_21_17
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

13960..15048
-----------------
DNA (1089bp)
protein (363aa)
oxidoreductase molybdopterin binding protein
Putative uncharacterized protein n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I2V7_SULAT (db=UNIREF evalue=2.7e-40 bit_score=171.8 identity=43.5 coverage=49.862258953168045)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=68)
AMDSBA5_21_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

15086..15946
-----------------
DNA (861bp)
protein (287aa)
phenazine biosynthesis protein PhzF family
Trans-2,3-dihydro-3-hydroxyanthranilate isomerase n=25 Tax=Pseudomonas RepID=PHZF_PSEAE (db=UNIREF evalue=3.1e-15 bit_score=88.2 identity=54.1 coverage=28.57142857142857)
Isomerase, PhzF type (db=HMMPIR db_id=PIRSF016184 from=3 to=286 evalue=1.0e-58 interpro_id=IPR003719 interpro_description=Phenazine biosynthesis PhzC/PhzF protein GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: biosynthetic process (GO:0009058))
Diaminopimelate epimerase-like (db=superfamily db_id=SSF54506 from=4 to=286 evalue=7.5e-54)
AMDSBA5_21_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15943..18042)
-----------------
DNA (2100bp)
protein (700aa)
Penicillin-binding protein, 1A family n=2 Tax=Sulfobacillus acidophilus RepID=G8TUE6_9FIRM (db=UNIREF evalue=1.1e-289 bit_score=1001.1 identity=69.8 coverage=99.57142857142857)
penicillin-binding protein (EC:2.4.1.129)
penicillin-binding protein (EC:2.4.1.129)
AMDSBA5_21_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18335..18796
-----------------
DNA (462bp)
protein (154aa)
arginine decarboxylase (EC:4.1.1.19)
Arginine decarboxylase, pyruvoyl-dependent n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TES5_HELMI (db=UNIREF evalue=1.3e-41 bit_score=174.9 identity=58.2 coverage=98.05194805194806)
TIGR00286: arginine decarboxylase, pyruvoyl (db=HMMTigr db_id=TIGR00286 from=3 to=153 evalue=3.7e-46 interpro_id=IPR002724 interpro_description=Pyruvoyl-dependent arginine decarboxylase GO=Biological Process: arginine catabolic process (GO:0006527), Molecular Function: arginine decarboxylase activity (GO:0008792))
Pyruvoyl-dependent histidine and arginine decarboxylases (db=superfamily db_id=SSF56271 from=4 to=153 evalue=1.0e-43 interpro_id=IPR016104 interpro_description=Pyruvoyl-dependent histidine/arginine decarboxylase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: carboxy-lyase activity (GO:0016831))
AMDSBA5_21_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18865..19677
-----------------
DNA (813bp)
protein (271aa)
speE; spermidine synthase
Spermidine synthase 2 n=7 Tax=Leptospira RepID=SPEE2_LEPIN (db=UNIREF evalue=1.2e-56 bit_score=225.7 identity=41.2 coverage=98.8929889298893)
seg (db=Seg db_id=seg from=79 to=89)
SPERMIDINE_SYNTHASE_1 (db=PatternScan db_id=PS01330 from=79 to=92 evalue=0.0 interpro_id=IPR001045 interpro_description=Spermine synthase GO=Molecular Function: catalytic activity (GO:0003824))
AMDSBA5_21_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19674..20531
-----------------
DNA (858bp)
protein (286aa)
agmatinase (EC:3.5.3.11)
Arginase-family protein n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=Q67TJ0_SYMTH (db=UNIREF evalue=8.8e-79 bit_score=299.3 identity=53.3 coverage=95.8041958041958)
ARGINASE_1 (db=PatternScan db_id=PS01053 from=212 to=233 evalue=0.0 interpro_id=IPR020855 interpro_description=Ureohydrolase, manganese-binding site GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813), Molecular Function: metal ion binding (GO:0046872))
agmatinase: agmatinase (db=HMMTigr db_id=TIGR01230 from=9 to=283 evalue=1.4e-118 interpro_id=IPR005925 interpro_description=Agmatinase-related)
AMDSBA5_21_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


20548..22215
-----------------
DNA (1668bp)
protein (556aa)
BSCG--tRNA--synthetase--arginyl
Arginine--tRNA ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TUE2_9FIRM (db=UNIREF evalue=1.1e-189 bit_score=668.7 identity=59.6 coverage=99.64028776978418)
arginyl-tRNA synthetase (EC:6.1.1.19)
arginyl-tRNA synthetase (EC:6.1.1.19)
AMDSBA5_21_24
Brevibacillus agri, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22410..23549)
-----------------
DNA (1140bp)
protein (380aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTE0_9FIRM (db=UNIREF evalue=1.1e-25 bit_score=123.2 identity=34.8 coverage=54.736842105263165)
seg (db=Seg db_id=seg from=5 to=24)
Uncharacterized protein n=1 Tax=Brevibacillus sp. BC25 RepID=J3A918_9BACL
AMDSBA5_21_25
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23956..24393
-----------------
DNA (438bp)
protein (146aa)
seg (db=Seg db_id=seg from=80 to=87)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=139 evalue=1.6e-26)
no description (db=HMMSmart db_id=SM00347 from=26 to=126 evalue=3.0e-14 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=33 to=106 evalue=1.7e-13 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA5_21_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24623..26197
-----------------
DNA (1575bp)
protein (525aa)
malate synthase (EC:2.3.3.9)
malate synthase (EC:2.3.3.9)
Malate synthase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FYT9_PHATC (db=UNIREF evalue=2.1e-126 bit_score=458.4 identity=46.8 coverage=99.04761904761905)
AMDSBA5_21_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26311..27921
-----------------
DNA (1611bp)
protein (537aa)
L-lactate permease
L-lactate permease
L-lactate permease n=2 Tax=Sulfobacillus acidophilus RepID=G8TWV6_9FIRM (db=UNIREF evalue=2.3e-274 bit_score=949.9 identity=86.0 coverage=99.25512104283054)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBA5_21_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27991..29637)
-----------------
DNA (1647bp)
protein (549aa)
amino acid permease
amino acid permease
Amino acid transporter n=1 Tax=Acidilobus saccharovorans 345-15 RepID=D9PZB5_ACIS3 (db=UNIREF evalue=7.5e-79 bit_score=300.4 identity=35.3 coverage=85.06375227686704)
transmembrane_regions (db=TMHMM db_id=tmhmm from=423 to=445)
AMDSBA5_21_29
unknown

Not on your lists

30047..30457
-----------------
DNA (411bp)
protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
AMDSBA5_21_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30478..31071)
-----------------
DNA (594bp)
protein (198aa)
HNH endonuclease
HNH endonuclease n=2 Tax=Sulfobacillus acidophilus RepID=G8TUE1_9FIRM (db=UNIREF evalue=1.4e-70 bit_score=271.6 identity=64.7 coverage=93.93939393939394)
coiled-coil (db=Coil db_id=coil from=127 to=148 evalue=NA)
no description (db=HMMSmart db_id=SM00507 from=54 to=103 evalue=5.5e-13 interpro_id=IPR003615 interpro_description=HNH nuclease)
Displaying items 1-30 of 36 in total

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