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AMDSBA5_25

Alias: AMDSBA5_C24

Search features with annotation key words

Displaying items 1-30 of 94 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA5_25_1
unknown

Not on your lists

comp(2..82)
-----------------
DNA (81bp)
protein (27aa)
2..82 - ( gc_cont=0.506)
AMDSBA5_25_2
Metallosphaera sedula, Metallosphaera, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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comp(99..1421)
-----------------
DNA (1323bp)
protein (441aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFW5_METS5 (db=UNIREF evalue=1.9e-133 bit_score=481.5 identity=58.6 coverage=89.79591836734694)
transmembrane_regions (db=TMHMM db_id=tmhmm from=337 to=359)
AMDSBA5_25_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1839..2069)
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSI2_9FIRM (db=UNIREF evalue=1.6e-22 bit_score=110.5 identity=65.8 coverage=97.40259740259741)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I235_SULAT
AMDSBA5_25_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2330..3601
-----------------
DNA (1272bp)
protein (424aa)
major facilitator superfamily protein
Major facilitator superfamily protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFS6_9EURY (db=UNIREF evalue=4.6e-84 bit_score=317.4 identity=45.5 coverage=93.63207547169812)
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=141)
transmembrane_regions (db=TMHMM db_id=tmhmm from=359 to=381)
AMDSBA5_25_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3745..4647
-----------------
DNA (903bp)
protein (301aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W229_MARMS (db=UNIREF evalue=1.3e-16 bit_score=92.8 identity=22.6 coverage=91.36212624584718)
(db=HMMPfam db_id=PF03466 from=88 to=293 evalue=5.4e-34 interpro_id=IPR005119 interpro_description=LysR, substrate-binding)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=84 to=295 evalue=3.1e-33)
AMDSBA5_25_6
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4673..6247)
-----------------
DNA (1575bp)
protein (525aa)
Oligoxyloglucan reducing end-specific cellobiohydrolase (db=superfamily db_id=SSF110296 from=31 to=324 evalue=1.8e-21)
no description (db=Gene3D db_id=G3DSA:2.130.10.140 from=17 to=221 evalue=9.5e-09)
(db=HMMPfam db_id=PF02012 from=123 to=133 evalue=1.0 interpro_id=IPR002860 interpro_description=BNR repeat)
(db=HMMPfam db_id=PF02012 from=25 to=34 evalue=2.9 interpro_id=IPR002860 interpro_description=BNR repeat)
AMDSBA5_25_7
unknown

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comp(6250..6555)
-----------------
DNA (306bp)
protein (102aa)
seg (db=Seg db_id=seg from=50 to=59)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=20 evalue=5.0)
AMDSBA5_25_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6718..7368)
-----------------
DNA (651bp)
protein (217aa)
glutaredoxin-like domain-containing protein
Glutaredoxin-like domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHY2_9EURY (db=UNIREF evalue=1.7e-21 bit_score=108.6 identity=32.2 coverage=92.62672811059907)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=118 to=215 evalue=4.9e-24 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=118 to=213 evalue=7.2e-17 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBA5_25_9
Coprothermobacter proteolyticus, Coprothermobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7675..8691)
-----------------
DNA (1017bp)
protein (339aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase 1 n=2 Tax=Bradyrhizobium japonicum RepID=PDXA1_BRAJA (db=UNIREF evalue=2.0e-58 bit_score=231.9 identity=42.0 coverage=94.69026548672566)
pdxA: 4-hydroxythreonine-4-phosphate dehydro (db=HMMTigr db_id=TIGR00557 from=10 to=331 evalue=1.4e-113 interpro_id=IPR005255 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA GO=Biological Process: pyridoxine biosynthetic process (GO:0008615), Molecular Function: 4-hydroxythreonine-4-phosphate dehydrogenase activity (GO:0050570), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
Isocitrate/Isopropylmalate dehydrogenase-like (db=superfamily db_id=SSF53659 from=7 to=335 evalue=9.5e-97)
AMDSBA5_25_10
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8694..9872)
-----------------
DNA (1179bp)
protein (393aa)
Putative membrane protein n=2 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FFA8_SACEN (db=UNIREF evalue=5.5e-07 bit_score=61.2 identity=29.0 coverage=53.43511450381679)
seg (db=Seg db_id=seg from=366 to=377)
YgbK-like (db=superfamily db_id=SSF142764 from=4 to=372 evalue=2.7e-37)
(db=HMMPfam db_id=PF07005 from=164 to=322 evalue=2.8e-06 interpro_id=IPR010737 interpro_description=Protein of unknown function, DUF1537)
AMDSBA5_25_11
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(9976..10767)
-----------------
DNA (792bp)
protein (264aa)
DeoR family transcriptional regulator
DeoR-family transcriptional regulator n=1 Tax=Arthrobacter arilaitensis Re117 RepID=E1W0Z2_ARTAR (db=UNIREF evalue=5.5e-27 bit_score=127.1 identity=32.2 coverage=95.07575757575758)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=6 to=40 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF00455 from=76 to=215 evalue=5.7e-35 interpro_id=IPR014036 interpro_description=Transcription regulator HTH, DeoR)
AMDSBA5_25_12
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10910..12205)
-----------------
DNA (1296bp)
protein (432aa)
ttuB1; putative tartrate transporter rbh
Transporter, anion:cation symporter (ACS) family n=2 Tax=Burkholderia multivorans RepID=B9BLL7_9BURK (db=UNIREF evalue=2.7e-63 bit_score=248.4 identity=33.1 coverage=92.5925925925926)
transmembrane_regions (db=TMHMM db_id=tmhmm from=365 to=387)
transmembrane_regions (db=TMHMM db_id=tmhmm from=394 to=416)
AMDSBA5_25_13
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(12528..13361)
-----------------
DNA (834bp)
protein (278aa)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=30 to=201 evalue=3.7e-24)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=45 to=169 evalue=9.7e-19)
(db=HMMPfam db_id=PF08241 from=56 to=152 evalue=1.9e-15 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
METHLYTRANSFERASE, UBIE/COQ5 FAMILY (db=HMMPanther db_id=PTHR10108:SF26 from=46 to=152 evalue=5.0e-10)
AMDSBA5_25_14
Halobacteroides halobius, Halobacteroides, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13527..14873
-----------------
DNA (1347bp)
protein (449aa)
beta-galactosidase
beta-galactosidase
Beta-glucosidase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDU4_PHATC (db=UNIREF evalue=1.3e-68 bit_score=266.2 identity=47.5 coverage=64.3652561247216)
GLYCOSYL_HYDROL_F1_1 (db=PatternScan db_id=PS00572 from=348 to=356 evalue=0.0 interpro_id=IPR018120 interpro_description=Glycoside hydrolase, family 1, active site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA5_25_15
Bacillus subterraneus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15051..15395)
-----------------
DNA (345bp)
protein (115aa)
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=10 to=114 evalue=6.9e-35 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=16 to=112 evalue=3.0e-27 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=HMMSmart db_id=SM00450 from=16 to=111 evalue=1.1e-23 interpro_id=IPR001763 interpro_description=Rhodanese-like)
(db=HMMPfam db_id=PF00581 from=17 to=108 evalue=4.0e-23 interpro_id=IPR001763 interpro_description=Rhodanese-like)
AMDSBA5_25_16
unknown

Not on your lists

15615..15995
-----------------
DNA (381bp)
protein (127aa)
coiled-coil (db=Coil db_id=coil from=29 to=50 evalue=NA)
AMDSBA5_25_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16190..18142
-----------------
DNA (1953bp)
protein (651aa)
NAD-dependent formate dehydrogenase catalytic subunit (EC:1.7.99.4)
NAD-dependent formate dehydrogenase catalytic subunit n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TT95_9FIRM (db=UNIREF evalue=3.8e-25 bit_score=119.4 identity=69.8 coverage=97.70114942528735)
Formate dehydrogenase/DMSO reductase, domains 1-3 (db=superfamily db_id=SSF53706 from=8 to=85 evalue=2.7e-21)
no description (db=Gene3D db_id=G3DSA:3.40.50.740 from=11 to=86 evalue=2.9e-18)
AMDSBA5_25_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18163..18612
-----------------
DNA (450bp)
protein (150aa)
NADH-quinone oxidoreductase subunit F 2
Respiratory-chain NADH dehydrogenase domain 51 kDa subunit n=8 Tax=Methylobacterium RepID=H1KNV6_METEX (db=UNIREF evalue=4.7e-15 bit_score=86.7 identity=30.3 coverage=90.66666666666666)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=4 to=146 evalue=2.2e-29 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
(db=HMMPfam db_id=PF01257 from=12 to=145 evalue=1.0e-27 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA5_25_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18609..19832
-----------------
DNA (1224bp)
protein (408aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH oxidoreductase (Quinone), F subunit n=3 Tax=Nitrosococcus RepID=B6C0U4_9GAMM (db=UNIREF evalue=4.2e-66 bit_score=257.7 identity=37.2 coverage=96.56862745098039)
NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) (db=HMMPanther db_id=PTHR11780 from=16 to=397 evalue=8.0e-126)
seg (db=Seg db_id=seg from=260 to=276)
AMDSBA5_25_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19862..20695
-----------------
DNA (834bp)
protein (278aa)
NAD-dependent formate dehydrogenase iron-sulfur protein
NAD-dependent formate dehydrogenase iron-sulfur protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TT93_9FIRM (db=UNIREF evalue=1.2e-104 bit_score=385.2 identity=66.2 coverage=97.12230215827337)
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=187 to=198 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA5_25_22
unknown

Not on your lists

21002..21265
-----------------
DNA (264bp)
protein (88aa)
21002..21265 + ( gc_cont=0.538)
AMDSBA5_25_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21489..22298
-----------------
DNA (810bp)
protein (270aa)
cytosine deaminase (EC:3.5.4.1)
Amidohydrolase 3 n=3 Tax=Paenibacillus mucilaginosus RepID=H6NLA6_9BACL (db=UNIREF evalue=5.6e-35 bit_score=153.7 identity=35.2 coverage=98.51851851851852)
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=1 to=221 evalue=1.8e-46)
Metallo-dependent hydrolases (db=superfamily db_id=SSF51556 from=1 to=232 evalue=5.5e-39)
AMDSBA5_25_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22439..23143)
-----------------
DNA (705bp)
protein (235aa)
livF; ABC transporter
ABC transporter family protein n=3 Tax=Photobacterium RepID=F2PAT5_PHOMO (db=UNIREF evalue=1.8e-21 bit_score=108.6 identity=31.5 coverage=91.91489361702128)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=4 to=230 evalue=1.1e-70)
seg (db=Seg db_id=seg from=107 to=124)
AMDSBA5_25_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23191..23904)
-----------------
DNA (714bp)
protein (238aa)
livG; ABC transporter
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0Z0L7_9CLOT (db=UNIREF evalue=1.0e-19 bit_score=102.8 identity=31.0 coverage=85.29411764705883)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=235 evalue=6.7e-77)
BRANCHED CHAIN AMINO ACID ABC TRANSPORT (db=HMMPanther db_id=PTHR19222:SF14 from=7 to=235 evalue=6.7e-77)
AMDSBA5_25_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23894..24850)
-----------------
DNA (957bp)
protein (319aa)
amino acid ABC transporter
amino acid ABC transporter
Inner-membrane translocator n=3 Tax=Acidiphilium RepID=F7S4Q1_9PROT (db=UNIREF evalue=1.2e-89 bit_score=335.5 identity=55.9 coverage=90.9090909090909)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
AMDSBA5_25_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24843..25718)
-----------------
DNA (876bp)
protein (292aa)
amino acid ABC transporter
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSG4_9FIRM (db=UNIREF evalue=3.3e-97 bit_score=360.5 identity=59.1 coverage=99.31506849315068)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=259 to=281)
AMDSBA5_25_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25802..27037)
-----------------
DNA (1236bp)
protein (412aa)
amino acid ABC transporter substrate-binding protein
amino acid ABC transporter substrate-binding protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=2 Tax=Sulfobacillus acidophilus RepID=G8TSG3_9FIRM (db=UNIREF evalue=5.0e-152 bit_score=543.1 identity=71.3 coverage=90.53398058252428)
seg (db=Seg db_id=seg from=13 to=36)
AMDSBA5_25_29
Anoxybacillus gonensis, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27318..28454)
-----------------
DNA (1137bp)
protein (379aa)
cystathionine beta-lyase
cystathionine beta-lyase
Cystathionine beta-lyase n=4 Tax=Lactobacillus fermentum RepID=D0DRK4_LACFE (db=UNIREF evalue=6.6e-90 bit_score=336.7 identity=46.5 coverage=98.15303430079155)
CYSTATHIONINE GAMMA-LYASE (GAMMA-CYSTATHIONASE) (db=HMMPanther db_id=PTHR11808:SF15 from=81 to=377 evalue=1.9e-140)
AMDSBA5_25_30
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28542..29975)
-----------------
DNA (1434bp)
protein (478aa)
transcriptional regulator with HTH domain and aminotransferase domain
Putative transcriptional regulator, GntR family n=1 Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PFR1_STRVO (db=UNIREF evalue=4.6e-32 bit_score=144.8 identity=29.9 coverage=72.59414225941423)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=76 to=469 evalue=1.3e-93 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
GNTR TRANSCRIPTIONAL REGULATOR RELATED (db=HMMPanther db_id=PTHR11751:SF16 from=128 to=469 evalue=7.7e-81)
AMDSBA5_25_31
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30587..31858
-----------------
DNA (1272bp)
protein (424aa)
GntR family transcriptional regulator (EC:2.6.1.57)
Transcriptional regulator, GntR family with aminotransferase activity n=1 Tax=Marinomonas sp. MED121 RepID=A3YCN5_9GAMM (db=UNIREF evalue=4.0e-19 bit_score=101.7 identity=26.3 coverage=60.84905660377359)
seg (db=Seg db_id=seg from=2 to=21)
PLP-dependent transferases (db=superfamily db_id=SSF53383 from=18 to=419 evalue=1.0e-96 interpro_id=IPR015424 interpro_description=Pyridoxal phosphate-dependent transferase, major domain)
Displaying items 1-30 of 94 in total

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