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AMDSBAU_20

Alias: SULFO_OTHER_20

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_20_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(650..1543)
-----------------
DNA (894bp)
protein (298aa)
ureidoglycolate lyase (EC:4.3.2.3)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase n=2 Tax=Sulfobacillus acidophilus RepID=F8I816_SULAT (db=UNIREF evalue=2.0e-77 bit_score=295.0 identity=53.2 coverage=97.31543624161074)
coiled-coil (db=Coil db_id=coil from=47 to=68 evalue=NA)
(db=HMMPfam db_id=PF01557 from=84 to=290 evalue=2.5e-65 interpro_id=IPR002529 interpro_description=Fumarylacetoacetase, C-terminal GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBAU_20_2
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1670..2227)
-----------------
DNA (558bp)
protein (186aa)
sugar isomerase
Sugar isomerase (SIS) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=D7BE34_MEISD (db=UNIREF evalue=5.3e-28 bit_score=130.2 identity=41.7 coverage=93.54838709677419)
SIS domain (db=superfamily db_id=SSF53697 from=7 to=185 evalue=1.6e-20)
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=7 to=185 evalue=1.4e-24)
AMDSBAU_20_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2617..4023)
-----------------
DNA (1407bp)
protein (469aa)
carbohydrate kinase
Carbohydrate kinase n=1 Tax=Eubacterium limosum KIST612 RepID=E3GLT5_EUBLK (db=UNIREF evalue=4.5e-52 bit_score=211.5 identity=30.7 coverage=98.72068230277186)
(db=HMMPfam db_id=PF00370 from=5 to=236 evalue=1.2e-18 interpro_id=IPR018484 interpro_description=Carbohydrate kinase, FGGY, N-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
(db=HMMPfam db_id=PF02782 from=246 to=427 evalue=1.3e-30 interpro_id=IPR018485 interpro_description=Carbohydrate kinase, FGGY, C-terminal GO=Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
AMDSBAU_20_4
unknown

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comp(4601..4693)
-----------------
DNA (93bp)
protein (31aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBAU_20_5
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4983..6506)
-----------------
DNA (1524bp)
protein (508aa)
lipoate-protein ligase B/lipoate synthase
lipoate-protein ligase B/lipoate synthase
Lipoate-protein ligase B/lipoate synthase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1N8_DESTA
Lipoate-protein ligase B/lipoate synthase n=1 Tax=Desulfomonile tiedjei DSM 6799 RepID=I4C1N8_DESTA (db=UNIREF evalue=7.2e-120 bit_score=436.8 identity=46.3 coverage=96.45669291338582)
AMDSBAU_20_6
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(6503..7879)
-----------------
DNA (1377bp)
protein (459aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RXV8_THEOJ (db=UNIREF evalue=3.5e-73 bit_score=281.6 identity=36.9 coverage=96.94989106753813)
PYRIDINE_REDOX_1 (db=PatternScan db_id=PS00076 from=43 to=53 evalue=0.0 interpro_id=IPR012999 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO=Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, NAD or NADP as acceptor (GO:0016668), Biological Process: oxidation-reduction process (GO:0055114))
seg (db=Seg db_id=seg from=13 to=28)
AMDSBAU_20_7
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7857..9068)
-----------------
DNA (1212bp)
protein (404aa)
alkylhydroperoxidase-like protein
Alkylhydroperoxidase like protein, AhpD family n=2 Tax=Desulfotomaculum RepID=F6B905_DESCC (db=UNIREF evalue=1.1e-73 bit_score=283.1 identity=39.4 coverage=95.54455445544554)
LIPOYL (db=PatternScan db_id=PS00189 from=27 to=56 evalue=0.0 interpro_id=IPR003016 interpro_description=2-oxo acid dehydrogenase, lipoyl-binding site)
seg (db=Seg db_id=seg from=224 to=236)
AMDSBAU_20_8
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9209..10249)
-----------------
DNA (1041bp)
protein (347aa)
2-oxoisovalerate dehydrogenase subunit beta (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase beta subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZM4_THERP (db=UNIREF evalue=5.8e-129 bit_score=466.5 identity=68.5 coverage=95.67723342939482)
seg (db=Seg db_id=seg from=229 to=241)
seg (db=Seg db_id=seg from=267 to=276)
AMDSBAU_20_9
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(10279..11247)
-----------------
DNA (969bp)
protein (323aa)
TPP-dependent acetoin dehydrogenase subunit alpha
TPP-dependent acetoin dehydrogenase subunit alpha
TPP-dependent acetoin dehydrogenase alpha-subunit n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZM3_THERP
TPP-dependent acetoin dehydrogenase alpha-subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZM3_THERP (db=UNIREF evalue=4.4e-131 bit_score=473.4 identity=68.6 coverage=99.07120743034056)
AMDSBAU_20_10
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(11501..12517)
-----------------
DNA (1017bp)
protein (339aa)
monosaccharide ABC transporter membrane protein, cut2 family
Monosaccharide ABC transporter membrane protein, CUT2 family n=1 Tax=Oceanithermus profundus DSM 14977 RepID=E4U7P5_OCEP5 (db=UNIREF evalue=4.7e-59 bit_score=234.2 identity=39.8 coverage=88.20058997050147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=275 to=286)
AMDSBAU_20_11
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12521..13531)
-----------------
DNA (1011bp)
protein (337aa)
Monosaccharide-transporting ATPase n=4 Tax=Bacillus RepID=C3B4Q9_BACMY (db=UNIREF evalue=2.2e-48 bit_score=198.7 identity=35.6 coverage=88.13056379821958)
inner-membrane translocator
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
seg (db=Seg db_id=seg from=262 to=288)
AMDSBAU_20_12
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13564..15159)
-----------------
DNA (1596bp)
protein (532aa)
putative L-rhamnose ABC transporter, ATP-binding component
putative L-rhamnose ABC transporter, ATP-binding component
ABC-type sugar transport system, ATPase component protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IZC7_HERSS
ABC-type sugar transport system, ATPase component protein n=1 Tax=Herbaspirillum seropedicae SmR1 RepID=D8IZC7_HERSS (db=UNIREF evalue=3.2e-94 bit_score=351.7 identity=38.5 coverage=95.48872180451127)
AMDSBAU_20_13
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15376..16407)
-----------------
DNA (1032bp)
protein (344aa)
ABC transporter, solute-binding, sugar transport
ABC transporter, solute-binding, sugar transport n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WTL4_ALIAD (db=UNIREF evalue=5.1e-53 bit_score=214.2 identity=37.6 coverage=99.4186046511628)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=41 to=343 evalue=4.7e-59)
AMDSBAU_20_14
Streptomyces albulus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16555..17319)
-----------------
DNA (765bp)
protein (255aa)
cyclase family protein
Cyclase family protein n=2 Tax=Salinispora tropica RepID=A4X3Q3_SALTO (db=UNIREF evalue=4.3e-57 bit_score=227.3 identity=43.8 coverage=97.6470588235294)
Putative cyclase (db=superfamily db_id=SSF102198 from=2 to=254 evalue=1.6e-45)
(db=HMMPfam db_id=PF04199 from=6 to=196 evalue=5.6e-28 interpro_id=IPR007325 interpro_description=Putative cyclase)
AMDSBAU_20_15
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17460..18263)
-----------------
DNA (804bp)
protein (268aa)
srl; DeoR family transcriptional regulator
Transcriptional regulator, DeoR family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FFB1_SACEN (db=UNIREF evalue=1.2e-41 bit_score=176.0 identity=39.2 coverage=92.16417910447761)
HTH_DEOR_1 (db=PatternScan db_id=PS00894 from=6 to=40 evalue=0.0 interpro_id=IPR018356 interpro_description=Transcription regulator, HTH DeoR-type, conserved site GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF08220 from=6 to=57 evalue=1.6e-17 interpro_id=IPR001034 interpro_description=Transcription regulator HTH, DeoR N-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_20_16
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18365..19156)
-----------------
DNA (792bp)
protein (264aa)
yxbG; oxidoreductase yxbG rbh
yxbG; oxidoreductase yxbG rbh
Short chain dehydrogenase n=2 Tax=Bacillus megaterium RepID=D5DN78_BACMD
Short chain dehydrogenase n=2 Tax=Bacillus megaterium RepID=D5DN78_BACMD (db=UNIREF evalue=6.6e-93 bit_score=346.3 identity=66.4 coverage=98.10606060606061)
AMDSBAU_20_17
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(19469..20227)
-----------------
DNA (759bp)
protein (253aa)
short chain dehydrogenase family protein
2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) n=1 Tax=Bacillus megaterium DSM 319 RepID=D5DDG4_BACMD (db=UNIREF evalue=8.7e-42 bit_score=176.4 identity=40.1 coverage=94.0711462450593)
ADH_SHORT (db=PatternScan db_id=PS00061 from=147 to=175 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=248 evalue=1.2e-65)
AMDSBAU_20_18
Mesorhizobium sp. LNJC405B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20254..21348)
-----------------
DNA (1095bp)
protein (365aa)
mandelate racemase/muconate lactonizing protein
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein n=1 Tax=Paenibacillus sp. (strain JDR-2) RepID=C6D1J0_PAESJ
Mandelate racemase/muconate lactonizing protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1J0_PAESJ (db=UNIREF evalue=9.1e-109 bit_score=399.4 identity=50.0 coverage=99.17808219178083)
AMDSBAU_20_19
unknown

Not on your lists

21537..22160
-----------------
DNA (624bp)
protein (208aa)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
seg (db=Seg db_id=seg from=103 to=117)
seg (db=Seg db_id=seg from=190 to=201)
AMDSBAU_20_20

Not on your lists

comp(22152..22940)
-----------------
DNA (789bp)
protein (263aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Thermus scotoductus SA-01 RepID=E8PQN6_THESS (db=UNIREF evalue=8.0e-22 bit_score=110.2 identity=33.5 coverage=82.12927756653993)
coiled-coil (db=Coil db_id=coil from=224 to=245 evalue=NA)
seg (db=Seg db_id=seg from=216 to=233)
AMDSBAU_20_21
unknown

Not on your lists

23075..23689
-----------------
DNA (615bp)
protein (205aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=69 to=87)
seg (db=Seg db_id=seg from=7 to=18)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=29 to=200 evalue=5.3e-11 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBAU_20_22
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24175..25347
-----------------
DNA (1173bp)
protein (391aa)
Putative membrane protein n=1 Tax=Clostridium ljungdahlii DSM 13528 RepID=D8GUI9_CLOLD (db=UNIREF evalue=2.9e-20 bit_score=105.5 identity=24.0 coverage=93.60613810741688)
hypothetical protein
YgbK-like (db=superfamily db_id=SSF142764 from=4 to=371 evalue=2.4e-31)
AMDSBAU_20_23
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25347..26363
-----------------
DNA (1017bp)
protein (339aa)
4-hydroxythreonine-4-phosphate dehydrogenase
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y706_COPPD (db=UNIREF evalue=1.2e-78 bit_score=299.3 identity=48.2 coverage=97.34513274336283)
Isocitrate/Isopropylmalate dehydrogenase-like (db=superfamily db_id=SSF53659 from=7 to=335 evalue=1.3e-96)
pdxA: 4-hydroxythreonine-4-phosphate dehydro (db=HMMTigr db_id=TIGR00557 from=10 to=331 evalue=4.6e-115 interpro_id=IPR005255 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA GO=Biological Process: pyridoxine biosynthetic process (GO:0008615), Molecular Function: 4-hydroxythreonine-4-phosphate dehydrogenase activity (GO:0050570), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
Displaying 23 items

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