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rifcsphigho2_01_scaffold_6854

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6854_1
Methanococcoides burtonii, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2..2722
DNA (2721bp) protein (907aa)
Protein containing N-terminal subtilase family domain + central repeat Fibronectin type III domains + C-terminal repeat PDK domains n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12XJ3_METBU
KP-43 peptidase
Protein containing N-terminal subtilase family domain + central repeat Fibronectin type III domains + C-terminal repeat PDK domains {ECO:0000313|EMBL:ABE51833.1}; Flags: Precursor;; TaxID=259564 speci
rifcsphigho2_01_scaffold_6854_2
unknown

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comp(2750..3235)
DNA (486bp) protein (162aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_3
GWC2_OD1_42_6_partial, Parcubacteria, Bacteria

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3733..4518
DNA (786bp) protein (262aa)
Putative uncharacterized protein Tax=GWC2_OD1_42_6_partial
putative hydrolase id=120462 bin=ACD76 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hydrolase
rifcsphigho2_01_scaffold_6854_4
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(4560..5411)
DNA (852bp) protein (284aa)
hypothetical protein, partial n=1 Tax=candidate division OP11 bacterium SCGC AAA011-J08 RepID=UPI0003677E7C
Radical SAM domain protein Tax=GWC1_OP11_37_12
hypothetical protein
rifcsphigho2_01_scaffold_6854_5
RLO_RIF_OD1_13_41_11, RIF-OD1-13, Parcubacteria, Bacteria

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5563..6147
DNA (585bp) protein (195aa)
xanthosine triphosphate pyrophosphatase Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_13_41_11_curated
Ham1 family protein id=2133905 bin=GWD2_Clostridiales_32_19 species=Ilyobacter polytropus genus=Ilyobacter taxon_order=Fusobacteriales taxon_class=Fusobacteriia phylum=Fusobacteria tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
xanthosine triphosphate pyrophosphatase
rifcsphigho2_01_scaffold_6854_6
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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6337..7482
DNA (1146bp) protein (382aa)
Dihydroorotate oxidase Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
Dihydroorotate oxidase id=4985677 bin=GWA2_Ignavibacteria-rel_35_8 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria-rel_35_8 organism_group=Ignavibacteria
rifcsphigho2_01_scaffold_6854_7
GWA2_OD1_47_10, Parcubacteria, Bacteria

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comp(7611..8399)
DNA (789bp) protein (263aa)
hypothetical protein Tax=GWA2_OD1_47_10
rifcsphigho2_01_scaffold_6854_8
unknown

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comp(8701..8937)
DNA (237bp) protein (79aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_9

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comp(8928..9143)
DNA (216bp) protein (72aa)
Marine sediment metagenome DNA, contig: S06H3_L01682 {ECO:0000313|EMBL:GAI07750.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_01_scaffold_6854_10
Bergeyella zoohelcum, Bergeyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(9140..10528)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Bergeyella zoohelcum CCUG 30536 RepID=K1M2N8_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB61671.1}; TaxID=883098 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bergeyella.;" source="Bergeyella zoohelcum CC
sodium:solute transporter family
rifcsphigho2_01_scaffold_6854_11
unknown

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comp(10530..10727)
DNA (198bp) protein (66aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_12
CG_Pacearch_05, Pacearchaeota, Archaea

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11131..11709
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037380E1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
transcriptional regulator; K03718 Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA Tax=CG_Pacearch_05
rifcsphigho2_01_scaffold_6854_13

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12206..12931
DNA (726bp) protein (242aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA
Proteasome subunit alpha n=3 Tax=Thermococcus RepID=PSA_THESM id=5103842 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Proteasome subunit alpha
rifcsphigho2_01_scaffold_6854_14

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12947..13645
DNA (699bp) protein (233aa)
Ribosome maturation protein SDO1 homolog n=4 Tax=Methanocaldococcus RepID=SDO1_METJA id=5103843 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosome maturation protein SDO1-like protein
Ribosome maturation protein SDO1-like protein {ECO:0000313|EMBL:AJF63121.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_01_scaffold_6854_15
unknown

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13660..14352
DNA (693bp) protein (231aa)
Probable exosome complex RNA-binding protein 1 n=1 Tax=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=ECR1_PYRKO id=5103844 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Probable exosome complex RNA-binding protein 1 n=1 Tax=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=ECR1_PYRKO Tax=AR20
putative exosome complex RNA-binding protein 1
rifcsphigho2_01_scaffold_6854_16
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

14342..15064
DNA (723bp) protein (241aa)
ribosomal RNA-processing protein RRP41/SKI6 (EC:3.1.13.-); K11600 exosome complex component RRP41 id=5045736 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ribosomal RNA-processing protein RRP41/SKI6 (EC:3.1.13.-); K11600 exosome complex component RRP41 Tax=AR18
exosome complex exonuclease Rrp41
rifcsphigho2_01_scaffold_6854_17
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

15054..15836
DNA (783bp) protein (261aa)
exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-); K12589 exosome complex component RRP42 Tax=AR17
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036E0285
Ribosomal RNA-processing protein RRP42
rifcsphigho2_01_scaffold_6854_18
unknown

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15833..16063
DNA (231bp) protein (77aa)
UPI000021CFC7 related cluster n=1 Tax=unknown RepID=UPI000021CFC7 id=5103847 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
UPI000021CFC7 related cluster n=1 Tax=unknown RepID=UPI000021CFC7 Tax=AR20
hypothetical protein
rifcsphigho2_01_scaffold_6854_19
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(16056..17021)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F75AC
lrpC; Lpr family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
rifcsphigho2_01_scaffold_6854_20
unknown

Not on your lists

17138..17509
DNA (372bp) protein (124aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_21
CG_Woesearch_01, Woesearchaeota, Archaea

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17568..18086
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FB10_9BACT
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein
rifcsphigho2_01_scaffold_6854_22
unknown

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comp(18092..18340)
DNA (249bp) protein (83aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_23
Xenococcus sp. PCC 7305, Xenococcus, Pleurocapsales, Cyanobacteria, Bacteria

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comp(18425..20176)
DNA (1752bp) protein (584aa)
Putative carbamoyl transferase, NodU family n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M081_9CYAN
Putative carbamoyl transferase, NodU family {ECO:0000313|EMBL:ELS02563.1}; TaxID=102125 species="Bacteria; Cyanobacteria; Pleurocapsales; Xenococcus.;" source="Xenococcus sp. PCC 7305.;"
carbamoyltransferase family protein
rifcsphigho2_01_scaffold_6854_24
unknown

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comp(20182..21474)
DNA (1293bp) protein (431aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6854_25
Paenibacillus polymyxa, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(21464..22582)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00036CD4A8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHC22668.1}; TaxID=1429244 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa CR1.;"
rifcsphigho2_01_scaffold_6854_26
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(22588..23496)
DNA (909bp) protein (303aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034AA6C0
Omega-3 fatty acid desaturase
Omega-3 fatty acid desaturase {ECO:0000313|EMBL:AJT65133.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
rifcsphigho2_01_scaffold_6854_27

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comp(23904..26231)
DNA (2328bp) protein (776aa)
polB; DNA polymerase II (EC:2.7.7.7); K02336 DNA polymerase II [EC:2.7.7.7] id=5046297 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA polymerase {ECO:0000256|RuleBase:RU000442}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_6854_28
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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26324..26932
DNA (609bp) protein (203aa)
30S ribosomal protein S2 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS2_NANEQ id=5102942 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S2 {ECO:0000313|EMBL:KKR78533.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
30S ribosomal protein S2
rifcsphigho2_01_scaffold_6854_29
unknown

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26988..27314
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036FCC27
rifcsphigho2_01_scaffold_6854_30
AR11, Woesearchaeaota, DPANN, Archaea

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comp(27324..27983)
DNA (660bp) protein (220aa)
50S ribosomal protein L11 n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369B37C
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=AR11
LSU ribosomal protein L11P
Displaying items 1-30 of 34 in total

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