ggKbase home page

rifcsplowo2_01_scaffold_1529

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_1529_1

Not on your lists

297..1001
DNA (705bp) protein (235aa)
peptidyl-prolyl cis-trans isomerase; K03775 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8] id=5043665 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Marine sediment metagenome DNA, contig: S01H1_S32338 {ECO:0000313|EMBL:GAG36499.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Peptidyl-prolyl cis-trans isomerase
rifcsplowo2_01_scaffold_1529_2

Not on your lists

1127..2221
DNA (1095bp) protein (365aa)
cell division protein FtsZ; K03531 cell division protein FtsZ id=5043664 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
Cell division protein FtsZ
rifcsplowo2_01_scaffold_1529_3
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(2222..3445)
DNA (1224bp) protein (408aa)
RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CF84_THET1
RpoD subfamily RNA polymerase sigma-70 subunit
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
rifcsplowo2_01_scaffold_1529_4

Not on your lists

3652..3828
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003829297
Uncharacterized protein {ECO:0000313|EMBL:KHO50738.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
preprotein translocase, SecE subunit
rifcsplowo2_01_scaffold_1529_5

Not on your lists


3848..4465
DNA (618bp) protein (206aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG id=5043662 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Transcription elongation factor Spt5 {ECO:0000256|HAMAP-Rule:MF_00950}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
LSU ribosomal protein L24A Rpl24A
rifcsplowo2_01_scaffold_1529_6
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


4502..5275
DNA (774bp) protein (258aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=CG_Woesearch_01
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 id=5043660 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L11P
rifcsplowo2_01_scaffold_1529_7

Not on your lists

5287..5487
DNA (201bp) protein (67aa)
30S ribosomal protein S17e {ECO:0000256|HAMAP-Rule:MF_00511, ECO:0000256|SAAS:SAAS00278999}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
30S ribosomal protein S17e id=5800746 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
ribosomal protein S17e Rps17e
rifcsplowo2_01_scaffold_1529_8
unknown

Not on your lists

5860..6024
DNA (165bp) protein (55aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1529_9

Not on your lists

6226..6573
DNA (348bp) protein (116aa)
nucleotide pyrophosphohydrolase
Protein with tetrapyrrole methyltransferase and pyrophosphatase domains id=5800474 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Protein with tetrapyrrole methyltransferase and pyrophosphatase protein {ECO:0000313|EMBL:AJF61805.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
rifcsplowo2_01_scaffold_1529_10
unknown

Not on your lists

6570..6728
DNA (159bp) protein (53aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1529_11
AR17, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(7196..7726)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AAJ1_9EURY id=5103205 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein Tax=AR17
hypothetical protein
rifcsplowo2_01_scaffold_1529_12

Not on your lists

comp(8029..8241)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RZY0_FERPA
Uncharacterized protein {ECO:0000313|EMBL:KHO51353.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
hypothetical protein
rifcsplowo2_01_scaffold_1529_13
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8582..9673)
DNA (1092bp) protein (364aa)
DNA topoisomerase VI subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=AR9
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY id=5103234 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase ATP-hydrolyzing
rifcsplowo2_01_scaffold_1529_14
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9670..11370)
DNA (1701bp) protein (567aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] Tax=AR9
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048468 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA topoisomerase VI, subunit B
rifcsplowo2_01_scaffold_1529_15
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(11370..11918)
DNA (549bp) protein (183aa)
KH domain protein; K06961 ribosomal RNA assembly protein Tax=CG_Woesearch_02
KH domain protein; K06961 ribosomal RNA assembly protein id=5041915 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_1529_16
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(12110..12445)
DNA (336bp) protein (112aa)
id=5043594 Tax=CG_Woesearch_02
id=5043594 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_1529_17
unknown

Not on your lists

13101..13901
DNA (801bp) protein (267aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1529_18

Not on your lists

13950..14783
DNA (834bp) protein (278aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312};; TaxID=1457870 species="Archa
D-tyrosyl-tRNA(Tyr) deacylase id=4541657 bin=PER_GWC2_41_7 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
hypothetical protein
rifcsplowo2_01_scaffold_1529_19
unknown

Not on your lists

14891..15013
DNA (123bp) protein (41aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1529_20

Not on your lists

15074..15820
DNA (747bp) protein (249aa)
tRNA (adenine-N(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] id=5046750 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA (Adenine57-N1/adenine58-N1)-methyltransferase {ECO:0000313|EMBL:KHO45938.1}; EC=2.1.1.219 {ECO:0000313|EMBL:KHO45938.1};; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
tRNA methyltransferase
rifcsplowo2_01_scaffold_1529_21
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(15817..17019)
DNA (1203bp) protein (401aa)
glucose-1-phosphate thymidylyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] Tax=CG_Woesearch_01
Glucose-1-phosphate thymidylyltransferase id=5800016 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
nucleotidyl transferase
rifcsplowo2_01_scaffold_1529_22
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(17022..18359)
DNA (1338bp) protein (446aa)
phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RBG_13_Woesearchaeota_36_6_curated
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=GLMM_ANADE
rifcsplowo2_01_scaffold_1529_23

Not on your lists

comp(18356..19150)
DNA (795bp) protein (265aa)
Marine sediment metagenome DNA, contig: S01H1_L04327 {ECO:0000313|EMBL:GAF83794.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Myo-inositol-1(Or 4)-monophosphatase id=3637663 bin=GWC2_Deltaproteobacteria_42_51 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
inositol monophosphatase/fructose-1,6-bisphosphatase family protein
rifcsplowo2_01_scaffold_1529_24
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(19153..19815)
DNA (663bp) protein (221aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribac
Probable transaldolase n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z724_MELRP
transaldolase
rifcsplowo2_01_scaffold_1529_25
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(20000..21418)
DNA (1419bp) protein (473aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1123288 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae;
Dihydrolipoyl dehydrogenase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JX08_9FIRM
dihydrolipoamide dehydrogenase
rifcsplowo2_01_scaffold_1529_26
Petrotoga mobilis, Petrotoga, Petrotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(21415..22065)
DNA (651bp) protein (217aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BFL8_PETMO
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ABX31188.1}; TaxID=403833 species="Bacteria; Thermotogae; Petrotogales; Petrotogaceae; Petrotoga.;" source="Petrotoga mobilis (stra
rifcsplowo2_01_scaffold_1529_27
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(22062..23849)
DNA (1788bp) protein (596aa)
glucosamine/fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] id=5091451 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing {ECO:0000313|EMBL:KKP36787.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_1
glucosamine/fructose-6-phosphate aminotransferase
rifcsplowo2_01_scaffold_1529_28
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

24149..24682
DNA (534bp) protein (178aa)
hypothetical protein; K09120 hypothetical protein Tax=CG_Woesearch_01
hypothetical protein; K09120 hypothetical protein id=5047421 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_1529_29
GWA2_Planctomycetes_40_7_curated, Planctomycetes, Bacteria

Not on your lists

24859..26226
DNA (1368bp) protein (456aa)
Hypothetical secreted protein, NosD and DUF11 family id=3297565 bin=GWA2_Planctomycetia_40_7 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Planctomycetia_40_7 organism_group=Planctomycetes
Hypothetical secreted protein, NosD and DUF11 family Tax=GWA2_Planctomycetes_40_7_curated
rifcsplowo2_01_scaffold_1529_30
unknown

Not on your lists

26226..26741
DNA (516bp) protein (172aa)

This feature has no annotations

Displaying items 1-30 of 78 in total

View Taxonomy