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RifSed_csp2_16ft_3_scaffold_922

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RifSed_csp2_16ft_3_scaffold_922_1
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(90..818)
DNA (729bp) protein (243aa)
UbiA prenyltransferase Tax=Holophaga foetida DSM 6591 RepID=H1P3A9_9BACT
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_2
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(960..1367)
DNA (408bp) protein (136aa)
hypothetical protein Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B44439
Putative membrane protein {ECO:0000313|EMBL:KCZ70897.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
membrane protein
RifSed_csp2_16ft_3_scaffold_922_3
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1523..2827)
DNA (1305bp) protein (435aa)
Putative AP superfamily protein {ECO:0000313|EMBL:KCZ70898.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
type I phosphodiesterase/nucleotide pyrophosphatase
RifSed_csp2_16ft_3_scaffold_922_4
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2879..4003)
DNA (1125bp) protein (375aa)
Uncharacterized protein Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W3K9_UNCMA
Uncharacterized protein {ECO:0000313|EMBL:KCZ73019.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_922_5
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(4038..5537)
DNA (1500bp) protein (500aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LY96_CLOCD
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
RifSed_csp2_16ft_3_scaffold_922_6
unknown

Not on your lists

5716..5868
DNA (153bp) protein (51aa)

This feature has no annotations

RifSed_csp2_16ft_3_scaffold_922_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5906..7207
DNA (1302bp) protein (434aa)
MgtC/SapB transporter Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EAU8_METEZ
Putative membrane protein {ECO:0000313|EMBL:KCZ73203.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
MgtC/SapB transporter
RifSed_csp2_16ft_3_scaffold_922_8
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(7195..8292)
DNA (1098bp) protein (366aa)
Uncharacterized protein {ECO:0000313|EMBL:KCZ73205.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
RifSed_csp2_16ft_3_scaffold_922_9
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

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comp(8324..8569)
DNA (246bp) protein (82aa)
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_10
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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8674..10452
DNA (1779bp) protein (593aa)
Multi-sensor signal transduction histidine kinase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBW3_METEZ
multi-sensor signal transduction histidine kinase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
RifSed_csp2_16ft_3_scaffold_922_11
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

10681..10878
DNA (198bp) protein (66aa)
Uncharacterized protein family UPF0150 Tax=Methanoplanus limicola DSM 2279 RepID=H1Z0V6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KCZ72506.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_922_12
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10886..12169)
DNA (1284bp) protein (428aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
UPI0003D1BE59 related cluster Tax=unknown RepID=UPI0003D1BE59
tryptophanyl-tRNA synthetase
RifSed_csp2_16ft_3_scaffold_922_13
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12324..12953
DNA (630bp) protein (210aa)
Putative uncharacterized protein Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CUC2_METMJ
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_14
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

12962..13966
DNA (1005bp) protein (335aa)
Putative Phosphate transporter family protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CV93_9ARCH
pit; putative inorganic phosphate transporter
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_15
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14010..14303
DNA (294bp) protein (98aa)
Signal recognition particle 19 kDa protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7EBK0_METEZ
Signal recognition particle 19 kDa protein {ECO:0000256|HAMAP-Rule:MF_00305}; Short=SRP19 {ECO:0000256|HAMAP-Rule:MF_00305};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Signal recognition particle SEC65 subunit
RifSed_csp2_16ft_3_scaffold_922_16
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

14300..14947
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Methanolobus psychrophilus R15 RepID=K4MCP9_9EURY
PHP family phosphohydrolase, histidinol phosphatase {ECO:0000313|EMBL:KCZ71358.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_922_17
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

15051..15257
DNA (207bp) protein (69aa)
Uncharacterized protein Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PW30_METMA
gar1 - like small nucleolar rnp
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_18
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

15269..16282
DNA (1014bp) protein (338aa)
Transcription initiation factor IIB Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WRD9_METH6
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Transcription initiation factor IIB
RifSed_csp2_16ft_3_scaffold_922_19
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16326..17435)
DNA (1110bp) protein (370aa)
Zinc metalloproteinase precursor (EC:3.4.24.29)
Extracellular protease Tax=Methanobacterium formicicum DSM 3637 RepID=K2RBM3_METFO
Extracellular protease {ECO:0000313|EMBL:EKF85709.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium formicicum DSM 3637.;"
RifSed_csp2_16ft_3_scaffold_922_20
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

17755..18588
DNA (834bp) protein (278aa)
Peptidase C14 caspase catalytic subunit p20 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAF9_PELPB
peptidase C14 caspase catalytic subunit p20
Peptidase C14 caspase catalytic subunit p20 {ECO:0000313|EMBL:ACF43845.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
RifSed_csp2_16ft_3_scaffold_922_21
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18592..19857
DNA (1266bp) protein (422aa)
Peptidase C11 clostripain bin=GWF2_Geobacter_54_21 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
peptidase
Tax=GWC2_Geobacteraceae_55_20_curated
RifSed_csp2_16ft_3_scaffold_922_22
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(20187..21188)
DNA (1002bp) protein (334aa)
Uncharacterized protein Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8N6_METEZ
Uncharacterized protein {ECO:0000313|EMBL:KCZ70719.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
hypothetical protein
RifSed_csp2_16ft_3_scaffold_922_23
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(21777..22079)
DNA (303bp) protein (101aa)
50S ribosomal protein L37Ae Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E8G3_METEZ
50S ribosomal protein L37a
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_24
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(22082..22867)
DNA (786bp) protein (262aa)
rrp42p; exosome complex RNA-binding protein Rrp42 (EC:3.1.13.-)
Exosome complex component Rrp42 Tax=Uncultured methanogenic archaeon RC-I RepID=RRP42_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_25
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

comp(22854..23585)
DNA (732bp) protein (244aa)
rrp41p; putative exosome complex exonuclease 1 (EC:3.1.13.-)
Exosome complex component Rrp41 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2Y8_UNCMA
Tax=RBG_16_Euryarchaeota_41_19_curated
RifSed_csp2_16ft_3_scaffold_922_26
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(23630..24424)
DNA (795bp) protein (265aa)
Exosome complex component Rrp4 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BTR1_METCG
Exosome complex component Rrp4 {ECO:0000256|HAMAP-Rule:MF_00623}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
exosome complex RNA-binding protein RRP4
RifSed_csp2_16ft_3_scaffold_922_27
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists


comp(24430..25125)
DNA (696bp) protein (232aa)
Ribosome maturation protein SBDS Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XML2_METZD
rRNA metabolism protein, SBDS family {ECO:0000313|EMBL:KCZ70726.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribosome maturation protein SBDS
RifSed_csp2_16ft_3_scaffold_922_28
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25132..25905)
DNA (774bp) protein (258aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {ECO:0000256|HAMAP-Rule:MF_00289}; Proteasome core protein PsmA {ECO:0000256|HAMAP-Rule:MF_00289}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Proteasome subunit alpha, archaeal (EC:3.4.25.1)
Proteasome subunit alpha Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=PSA_METBF
RifSed_csp2_16ft_3_scaffold_922_29
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(25938..26417)
DNA (480bp) protein (160aa)
Ribonuclease P protein component 2 {ECO:0000256|HAMAP-Rule:MF_00755}; Short=RNase P component 2 {ECO:0000256|HAMAP-Rule:MF_00755};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00755};; Pop5 {ECO:0000256|HAMAP-Rule:MF_00755}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribonuclease P protein component 2 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WQG5_METH6
ribonuclease P protein component 2
RifSed_csp2_16ft_3_scaffold_922_30
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(26414..27082)
DNA (669bp) protein (223aa)
Ribonuclease P protein component 3 {ECO:0000256|HAMAP-Rule:MF_00756}; Short=RNase P component 3 {ECO:0000256|HAMAP-Rule:MF_00756};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00756};; Rpp30 {ECO:0000256|HAMAP-Rule:MF_00756}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;"
Ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component 3 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XML5_METZD
Displaying items 1-30 of 46 in total

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