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SR-VP_26_10_2019_C_20cm-73-Thermoproteota-372_1

SR-VP_26_10_2019_C_20cm_Archaea_60_9
In projects: SR-VP_26_10_2019_C_20cm  |  archaea_ggkbase  |  circ_rRNA_paper_related

Consensus taxonomy: Archaea

Displaying items 101-150 of 202 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SR-VP_26_10_2019_C_20cm_scaffold_19909
Phylum: Thaumarchaeota (62.5%)
8 6566 bp 60.94 8.72 88.78
SR-VP_26_10_2019_C_20cm_scaffold_6061 27 15632 bp 56.19 8.70 73.93
SR-VP_26_10_2019_C_20cm_scaffold_61349 4 3132 bp 61.37 8.70 91.76
SR-VP_26_10_2019_C_20cm_scaffold_26059 6 5466 bp 61.86 8.69 85.68
SR-VP_26_10_2019_C_20cm_scaffold_46662 5 3738 bp 58.51 8.69 89.09
SR-VP_26_10_2019_C_20cm_scaffold_3982 25 21846 bp 60.77 8.69 87.59
SR-VP_26_10_2019_C_20cm_scaffold_30084
Domain: Archaea (50%)
4 4968 bp 60.67 8.66 87.74
SR-VP_26_10_2019_C_20cm_scaffold_5122 15 17869 bp 60.09 8.66 90.46
SR-VP_26_10_2019_C_20cm_scaffold_79520
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
4 2657 bp 61.69 8.66 98.12
SR-VP_26_10_2019_C_20cm_scaffold_26756
Domain: Archaea (85.71%)
7 5368 bp 61.49 8.66 93.78
SR-VP_26_10_2019_C_20cm_scaffold_39549
Domain: Bacteria (66.67%)
3 4163 bp 53.52 8.65 76.75
SR-VP_26_10_2019_C_20cm_scaffold_5101
Domain: Archaea (50%)
20 17932 bp 62.12 8.63 92.05
SR-VP_26_10_2019_C_20cm_scaffold_8658 17 11829 bp 63.62 8.62 97.34
SR-VP_26_10_2019_C_20cm_scaffold_58014 5 3247 bp 59.41 8.62 79.92
SR-VP_26_10_2019_C_20cm_scaffold_7160
Domain: Archaea (70.59%)
17 13779 bp 62.77 8.62 94.69
SR-VP_26_10_2019_C_20cm_scaffold_12106
Phylum: Thaumarchaeota (50%)
8 9267 bp 63.03 8.61 97.02
SR-VP_26_10_2019_C_20cm_scaffold_4669
Domain: Archaea (68.18%)
22 19309 bp 59.23 8.60 83.34
SR-VP_26_10_2019_C_20cm_scaffold_12097 8 9275 bp 57.20 8.60 84.97
SR-VP_26_10_2019_C_20cm_scaffold_24466
Domain: Archaea (60%)
5 5702 bp 62.01 8.59 86.23
SR-VP_26_10_2019_C_20cm_scaffold_5637
Phylum: Thaumarchaeota (58.82%)
17 16556 bp 62.27 8.59 92.07
SR-VP_26_10_2019_C_20cm_scaffold_4329 26 20499 bp 59.28 8.59 83.77
SR-VP_26_10_2019_C_20cm_scaffold_8843
Domain: Archaea (72.73%)
11 11641 bp 59.23 8.59 86.26
SR-VP_26_10_2019_C_20cm_scaffold_52737 6 3450 bp 60.09 8.55 93.22
SR-VP_26_10_2019_C_20cm_scaffold_27500 7 5272 bp 61.38 8.54 88.77
SR-VP_26_10_2019_C_20cm_scaffold_63007
Domain: Archaea (75%)
4 3081 bp 59.56 8.52 89.97
SR-VP_26_10_2019_C_20cm_scaffold_11116
Domain: Archaea (70%)
10 9821 bp 61.12 8.50 95.00
SR-VP_26_10_2019_C_20cm_scaffold_22321 7 6065 bp 58.50 8.49 86.86
SR-VP_26_10_2019_C_20cm_scaffold_11092
Domain: Archaea (50%)
10 9838 bp 64.39 8.49 90.96
SR-VP_26_10_2019_C_20cm_scaffold_22649
Species: Candidatus Caldiarchaeum subterraneum (75%)
4 6010 bp 58.84 8.49 91.50
SR-VP_26_10_2019_C_20cm_scaffold_13430
Phylum: Thaumarchaeota (50%)
10 8609 bp 59.02 8.45 93.74
SR-VP_26_10_2019_C_20cm_scaffold_12534
Domain: Bacteria (60%)
10 9030 bp 62.41 8.44 92.89
SR-VP_26_10_2019_C_20cm_scaffold_9502
Domain: Archaea (75%)
12 11018 bp 59.49 8.42 88.85
SR-VP_26_10_2019_C_20cm_scaffold_54401
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
4 3384 bp 61.67 8.42 92.46
SR-VP_26_10_2019_C_20cm_scaffold_10307 15 10393 bp 58.98 8.40 88.42
SR-VP_26_10_2019_C_20cm_scaffold_3441
Domain: Archaea (86.21%)
29 24548 bp 61.73 8.40 94.08
SR-VP_26_10_2019_C_20cm_scaffold_17445 8 7187 bp 58.40 8.38 82.98
SR-VP_26_10_2019_C_20cm_scaffold_37188
Phylum: Thaumarchaeota (66.67%)
3 4331 bp 62.39 8.37 96.98
SR-VP_26_10_2019_C_20cm_scaffold_12076
Domain: Archaea (83.33%)
12 9287 bp 62.30 8.37 91.81
SR-VP_26_10_2019_C_20cm_scaffold_13578
Domain: Archaea (63.64%)
11 8545 bp 62.48 8.37 96.55
SR-VP_26_10_2019_C_20cm_scaffold_3287 24 25511 bp 58.75 8.30 85.26
SR-VP_26_10_2019_C_20cm_scaffold_5684
Domain: Archaea (68.18%)
22 16415 bp 60.63 8.29 81.33
SR-VP_26_10_2019_C_20cm_scaffold_17954
Domain: Archaea (50%)
10 7045 bp 56.71 8.27 83.25
SR-VP_26_10_2019_C_20cm_scaffold_10239
Domain: Archaea (72.73%)
11 10444 bp 61.79 8.23 86.95
SR-VP_26_10_2019_C_20cm_scaffold_5172
Domain: Archaea (70.59%)
17 17719 bp 57.31 8.20 89.75
SR-VP_26_10_2019_C_20cm_scaffold_23156
Domain: Bacteria (50%)
8 5921 bp 57.78 8.19 82.64
SR-VP_26_10_2019_C_20cm_scaffold_16827
Domain: Archaea (50%)
10 7363 bp 56.04 8.18 65.88
SR-VP_26_10_2019_C_20cm_scaffold_7413
Domain: Archaea (58.33%)
12 13406 bp 62.91 8.17 93.79
SR-VP_26_10_2019_C_20cm_scaffold_10793 12 10048 bp 64.00 8.16 96.83
SR-VP_26_10_2019_C_20cm_scaffold_19036 10 6770 bp 59.34 8.12 88.32
SR-VP_26_10_2019_C_20cm_scaffold_50602
Domain: Bacteria (50%)
4 3547 bp 63.29 8.11 88.30
Displaying items 101-150 of 202 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.