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rifcsphigho2_01_scaffold_7686

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_7686_1
AR9, Woesearchaeaota, DPANN, Archaea

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comp(3..398)
DNA (396bp) protein (132aa)
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=AR9
rps12P; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 id=5044114 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
30S ribosomal protein S12
rifcsphigho2_01_scaffold_7686_2

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comp(760..1122)
DNA (363bp) protein (121aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO49281.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
hypothetical protein; K02908 large subunit ribosomal protein L30e id=5043968 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsphigho2_01_scaffold_7686_3

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comp(1167..2303)
DNA (1137bp) protein (379aa)
DNA-directed RNA polymerase subunit A {ECO:0000313|EMBL:KHO49282.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KHO49282.1};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
rpoA2; DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' id=5800703 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_7686_4

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comp(2321..4888)
DNA (2568bp) protein (856aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
DNA-directed RNA polymerase subunit A' (EC:2.7.7.48); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=5043970 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_7686_5
AR9, Woesearchaeaota, DPANN, Archaea

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comp(4954..6756)
DNA (1803bp) protein (601aa)
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=AR9
rpoB2; DNA-directed RNA polymerase, subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=5043971 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_7686_6
AR9, Woesearchaeaota, DPANN, Archaea

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comp(6759..8231)
DNA (1473bp) protein (491aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=AR9
DNA-directed RNA polymerase id=5800700 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
DNA-directed RNA polymerase
rifcsphigho2_01_scaffold_7686_7
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(8224..8460)
DNA (237bp) protein (79aa)
DNA-directed RNA polymerase, subunit h (EC:2.7.7.6); K03053 DNA-directed RNA polymerase subunit H [EC:2.7.7.6] Tax=AR9
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=RPOH_PYRAB
rifcsphigho2_01_scaffold_7686_8
unknown

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9294..9716
DNA (423bp) protein (141aa)

This feature has no annotations

rifcsphigho2_01_scaffold_7686_9
unknown

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9726..9935
DNA (210bp) protein (70aa)

This feature has no annotations

rifcsphigho2_01_scaffold_7686_10
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(9942..11459)
DNA (1518bp) protein (506aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.
tRNA-splicing ligase RtcB n=1 Tax=Fischerella muscicola RepID=UPI000300B63A
protein of unknown function UPF0027
rifcsphigho2_01_scaffold_7686_11

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comp(11481..12236)
DNA (756bp) protein (252aa)
Hypothetical conserved protein n=1 Tax=uncultured prokaryote RepID=H5SPX9_9ZZZZ
Hypothetical conserved protein {ECO:0000313|EMBL:BAL58215.1}; TaxID=198431 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
alpha/beta hydrolase domain-containing protein
rifcsphigho2_01_scaffold_7686_12
CG_Woesearch_02, Woesearchaeota, Archaea

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12355..12783
DNA (429bp) protein (143aa)
Tax=CG_Woesearch_02
rifcsphigho2_01_scaffold_7686_13

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comp(13180..14430)
DNA (1251bp) protein (417aa)
iMPDH1; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
hypothetical protein n=1 Tax=Aigarchaeota archaeon SCGC AAA471-G05 RepID=UPI00035DCCEA
Uncharacterized protein {ECO:0000313|EMBL:AKA48226.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rifcsphigho2_01_scaffold_7686_14
unknown

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14487..14996
DNA (510bp) protein (170aa)

This feature has no annotations

rifcsphigho2_01_scaffold_7686_15
unknown

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15009..15752
DNA (744bp) protein (248aa)

This feature has no annotations

rifcsphigho2_01_scaffold_7686_16
R_OD1_Nomurabacteria_41_18, Nomurabacteria, Parcubacteria, Bacteria

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15762..16094
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_41_18_curated
rifcsphigho2_01_scaffold_7686_17
R_OD1_Magasanikbacteria_51_14, Magasanikbacteria, Parcubacteria, Bacteria

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16369..16695
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z194_9BACT
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_51_14_curated
histidine triad (HIT) protein
Displaying 17 items

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