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RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_1
unknown

Not on your lists

comp(804..1049)
DNA (246bp) protein (82aa)

This feature has no annotations

RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

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1052..1603
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=candidate division WWE3 bacterium RAAC2_WWE3_1 RepID=V5RSZ6_9BACT
Homing endonuclease LAGLIDADG/HNH Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_3
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

2814..3293
DNA (480bp) protein (160aa)
site-specific DNA endonuclease Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Homing endonuclease id=2722907 bin=GWC1_OD1_38_17 species=Synechococcus sp. C9 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
site-specific DNA endonuclease
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_4
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

3988..4434
DNA (447bp) protein (149aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_5
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

4504..5265
DNA (762bp) protein (254aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_6
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

5270..6037
DNA (768bp) protein (256aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein id=2482479 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_7
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

6147..6818
DNA (672bp) protein (224aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
NUDIX hydrolase id=2194010 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
NUDIX hydrolase
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_8
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

7036..7851
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXJ6_RHOP2
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_9
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

7873..8622
DNA (750bp) protein (250aa)
von Willebrand factor type A-like protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CIN6_9GAMM
von Willebrand factor type A-like protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_10
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

8700..9578
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TK24_RICCO
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_11
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

9582..11315
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CBU6_9GAMM
Uncharacterized protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_12
R_RIF_OD1_09_50_13, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

11658..12929
DNA (1272bp) protein (424aa)
nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_09_50_13_curated
Nicotinate phosphoribosyltransferase n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=PNCB_RHILW
nicotinate phosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_13
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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13060..15069
DNA (2010bp) protein (670aa)
NAD+ synthetase n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AR02_PELPD
nadE; NAD synthetase
Tax=BJP_IG2102_Syntrophobacterales_60_12
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_14

Not on your lists

15244..16362
DNA (1119bp) protein (373aa)
Rod shape-determining protein rodA {ECO:0000313|EMBL:KKS33853.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
Rod shape-determining protein rodA id=2482482 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
rod shape-determining protein RodA
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_15
GWF2_OD1_42_19, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

16511..19726
DNA (3216bp) protein (1072aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037C611A
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKS47966.1}; TaxID=1618659 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWF2_42_19.;"
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_16
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

19744..23406
DNA (3663bp) protein (1221aa)
DNA-directed RNA polymerase, beta'' subunit, predominant form; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037A4755
DNA-directed RNA polymerase subunit beta''
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_17
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

23937..24626
DNA (690bp) protein (230aa)
hypothetical protein; K07491 putative transposase Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
hypothetical protein id=5085088 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_18
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(24659..26464)
DNA (1806bp) protein (602aa)
RNA-metabolising metallo-beta-lactamase; K12574 ribonuclease J [EC:3.1.-.-] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RNA-metabolising metallo-beta-lactamase id=3013277 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RNA-metabolising metallo-beta-lactamase
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_19
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(26467..26634)
DNA (168bp) protein (56aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_20
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(26645..28390)
DNA (1746bp) protein (582aa)
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Extracellular solute-binding protein family 5 id=4965044 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_21
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(28393..28614)
DNA (222bp) protein (74aa)
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG id=15189300 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
preprotein translocase subunit SecG
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_22
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(29299..29691)
DNA (393bp) protein (131aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_23
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

comp(29977..31299)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00036B9CB9
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
Excinuclease ABC subunit C
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_24
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

31301..31900
DNA (600bp) protein (200aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
RIFCSPHIGHO2_01_FULL_OD1_45_28_rifcsphigho2_01_scaffold_9758_25
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

32009..32488
DNA (480bp) protein (160aa)
excinuclease ABC, A subunit Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
UvrABC system protein A id=3544684 bin=GWC1_OD1_38_17 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
excinuclease ABC, A subunit
Displaying 25 items

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