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RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_1

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comp(1769..2521)
DNA (753bp) protein (251aa)
Transcriptional regulator, TrmB {ECO:0000313|EMBL:KKU29881.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
Transcriptional regulator, TrmB id=1955928 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Transcriptional regulator, TrmB
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_2

Not on your lists

comp(2580..3860)
DNA (1281bp) protein (427aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29880.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_3

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comp(3864..4016)
DNA (153bp) protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29879.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_4

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comp(4020..4445)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YGH2_THEYD
Uncharacterized protein {ECO:0000313|EMBL:KKU29878.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_5

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comp(4447..4857)
DNA (411bp) protein (137aa)
DNA polymerase beta domain protein region n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BJJ0_THEXL
Polymerase beta domain protein region protein {ECO:0000313|EMBL:KKU29877.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
DNA polymerase beta domain-containing protein region
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_6

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comp(4948..5427)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PX07_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKU29876.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_7

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comp(5424..6404)
DNA (981bp) protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29875.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_8

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comp(6443..8257)
DNA (1815bp) protein (605aa)
Type IV secretory pathway VirB4 component-like protein {ECO:0000313|EMBL:KKU29874.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1
type IV secretory pathway VirB4 components-like protein id=5803195 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Type IV secretory pathway VirB4 components-like protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_9

Not on your lists

comp(8259..8921)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000376DC51
Uncharacterized protein {ECO:0000313|EMBL:KKU29873.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_10
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

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comp(8924..9364)
DNA (441bp) protein (147aa)
seg Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
seg id=5803192 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_11

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comp(9366..10136)
DNA (771bp) protein (257aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29872.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
seg id=5803190 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_12

Not on your lists

comp(10141..13110)
DNA (2970bp) protein (990aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29871.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
Putative uncharacterized protein (Fragment) id=2934217 bin=GWC1_OD1_38_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_13
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(13120..14586)
DNA (1467bp) protein (489aa)
transmembrane_regions 7..24 Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
transmembrane_regions 7..24 id=133103 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_14

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comp(14576..15571)
DNA (996bp) protein (332aa)
Thrombospondin type 3 repeat superfamily protein {ECO:0000313|EMBL:KKU29869.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20
hypothetical protein id=5803186 bin=OD1_GWC2_34_28 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_15

Not on your lists

comp(15607..16395)
DNA (789bp) protein (263aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT29759.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_16

Not on your lists

comp(16671..18539)
DNA (1869bp) protein (623aa)
Glucosamine/fructose-6-phosphate aminotransferase, isomerizing, glucosamine-fructose-6-phosphate aminotransferase (Isomerizing) {ECO:0000313|EMBL:KKT29761.1}; EC=2.6.1.16 {ECO:0000313|EMBL:KKT29761.1}
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=uncultured bacterium RepID=K2G5H5_9BACT
glmS; glucosamine 6-phosphate synthetase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_17

Not on your lists

comp(18605..19321)
DNA (717bp) protein (239aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:KKU29865.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
glycerophosphoryl diester phosphodiesterase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_18
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(19408..19848)
DNA (441bp) protein (147aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_45_140_curated
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_19

Not on your lists

comp(19909..20019)
DNA (111bp) protein (37aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29863.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_20

Not on your lists


comp(20032..22905)
DNA (2874bp) protein (958aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucyl-tRNA synthetase {ECO:0000313|EMBL:KKU29862.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
id=5226969 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_21

Not on your lists

22967..23167
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29861.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_22

Not on your lists

23178..24833
DNA (1656bp) protein (552aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Petrotoga mobilis (strain DSM 10674 / SJ95) RepID=A9BJ72_PETMO
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:KKU29860.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
delta-1-pyrroline-5-carboxylate dehydrogenase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_23

Not on your lists

comp(24864..25715)
DNA (852bp) protein (284aa)
hydrolase, TatD family; K03424 TatD DNase family protein [EC:3.1.21.-] id=5227233 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
YabD {ECO:0000313|EMBL:KKU29859.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
hydrolase, TatD family
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_24
GWC2_OD1_45_7_partial, Azambacteria, Parcubacteria, Bacteria

Not on your lists


comp(25712..27310)
DNA (1599bp) protein (533aa)
Methionine-tRNA ligase {ECO:0000313|EMBL:KKU12084.1}; TaxID=1618621 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWC2_45_7b.;"
Methionine--tRNA ligase id=4783215 bin=GWC2_OD1_43_27 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
methionyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_25
GWA1_OD1_44_25, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(27307..28350)
DNA (1044bp) protein (348aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT59871.1}; TaxID=1618645 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA1_44_25.;"
hypothetical protein id=5803290 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_26

Not on your lists

comp(28354..29625)
DNA (1272bp) protein (424aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E82AE
Peptidase M16 domain protein {ECO:0000313|EMBL:KKU29856.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
peptidase M16 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_27

Not on your lists

comp(29698..29901)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29855.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_28

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comp(30134..30385)
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU29854.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
hypothetical protein id=87111 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_29

Not on your lists

comp(30442..32202)
DNA (1761bp) protein (587aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E2C1A
Type II secretion system protein E {ECO:0000313|EMBL:KKU29853.1}; TaxID=1618654 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWB1_46_20.;"
secretion system protein E
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_3550_30

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comp(32208..32582)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00035E4390
Response regulator receiver protein {ECO:0000313|EMBL:KKT29141.1}; TaxID=1618912 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_44_10.;"
response regulator receiver protein
Displaying items 1-30 of 44 in total

View Taxonomy