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ACD22_86

Alias: ACD22_72.27511.20

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD22_86_1

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3..770
DNA (768bp) protein (256aa)
hypothetical protein
IF-2 (db=HMMPfam db_id=PF11987 from=41 to=146 evalue=4.2e-24)
Initiation factor IF2/eIF5b, domain 3 (db=superfamily db_id=SSF52156 from=27 to=162 evalue=8.1e-21)
Translation proteins (db=superfamily db_id=SSF50447 from=156 to=254 evalue=1.2e-09 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
ACD22_86_2

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917..1585
DNA (669bp) protein (223aa)
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=20 to=212 evalue=9.7e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD99543.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD22_86_3

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1611..1880
DNA (270bp) protein (90aa)
hypothetical protein
RIBOSOMAL_S15 (db=PatternScan db_id=PS00362 from=39 to=69 evalue=0.0 interpro_id=IPR000589 interpro_description=Ribosomal protein S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S15 (db=HMMPanther db_id=PTHR23321:SF10 from=5 to=88 evalue=7.4e-40 interpro_id=IPR005290 interpro_description=Ribosomal protein S15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR (db=HMMPanther db_id=PTHR23321 from=5 to=88 evalue=7.4e-40)
ACD22_86_4

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2007..4193
DNA (2187bp) protein (729aa)
hypothetical protein
hypothetical protein
Polyribonucleotide nucleotidyltransferase n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSB4_9GAMM (db=UNIREF evalue=2.0e-149 bit_score=533.0 identity=46.33 coverage=93.9643347050754)
seg (db=Seg db_id=seg from=430 to=452)
ACD22_86_5

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4229..5191
DNA (963bp) protein (321aa)
seg (db=Seg db_id=seg from=299 to=309)
seg (db=Seg db_id=seg from=207 to=227)
seg (db=Seg db_id=seg from=83 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=94)
ACD22_86_6

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5198..6283
DNA (1086bp) protein (362aa)
hypothetical protein
ATP DEPENDENT LON PROTEASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10046 from=1 to=359 evalue=1.0e-87)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=81 to=359 evalue=7.9e-39)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=80 to=268 evalue=3.1e-21)
ACD22_86_7

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6311..6940
DNA (630bp) protein (210aa)
hypothetical protein
UDG_fam4: uracil-DNA glycosylase, family (db=HMMTigr db_id=TIGR00758 from=17 to=184 evalue=6.7e-60 interpro_id=IPR005273 interpro_description=Phage SPO1 DNA polymerase-related protein)
no description (db=Gene3D db_id=G3DSA:3.40.470.10 from=5 to=202 evalue=2.4e-54 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
Uracil-DNA glycosylase-like (db=superfamily db_id=SSF52141 from=7 to=185 evalue=2.6e-53 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
ACD22_86_8

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6956..8701
DNA (1746bp) protein (582aa)
hypothetical protein
hypothetical protein
Beta-lactamase domain protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D2D8_PAESJ (db=UNIREF evalue=5.0e-104 bit_score=382.0 identity=38.26 coverage=94.8453608247423)
seg (db=Seg db_id=seg from=7 to=14)
ACD22_86_9

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8723..10930
DNA (2208bp) protein (736aa)
hypothetical protein
hypothetical protein
Cell division protein FtsK/SpoIIIE n=6 Tax=Thermoanaerobacter RepID=D3T904_THEIA (db=UNIREF evalue=3.0e-133 bit_score=479.0 identity=52.15 coverage=61.6847826086957)
seg (db=Seg db_id=seg from=89 to=99)
ACD22_86_10
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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10965..11678
DNA (714bp) protein (238aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
seg (db=Seg db_id=seg from=107 to=126)
seg (db=Seg db_id=seg from=223 to=237)
ACD22_86_11
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

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11694..11864
DNA (171bp) protein (57aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions 24..46 Tax=RBG_16_WWE3_37_10_curated
ACD22_86_12

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comp(11866..12870)
DNA (1005bp) protein (335aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=16)
coiled-coil (db=Coil db_id=coil from=263 to=284 evalue=NA)
coiled-coil (db=Coil db_id=coil from=66 to=87 evalue=NA)
ACD22_86_13

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comp(12886..15459)
DNA (2574bp) protein (858aa)
hypothetical protein
hypothetical protein
Chaperone, Hsp100 family, ClpC-type n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S065_OSTLU (db=UNIREF evalue=2.0e-123 bit_score=447.0 identity=42.71 coverage=66.4335664335664)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
ACD22_86_14

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comp(15556..16143)
DNA (588bp) protein (196aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKD99555.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
ACD22_86_15

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comp(16182..16895)
DNA (714bp) protein (238aa)
DNA replication and repair protein RadC
radc: DNA repair protein RadC (db=HMMTigr db_id=TIGR00608 from=14 to=231 evalue=1.8e-60 interpro_id=IPR001405 interpro_description=Uncharacterised protein family, RadC-like)
DUF2466 (db=HMMPfam db_id=PF04002 from=112 to=230 evalue=1.5e-38 interpro_id=IPR001405 interpro_description=Uncharacterised protein family, RadC-like)
RuvA domain 2-like (db=superfamily db_id=SSF47781 from=17 to=96 evalue=3.8e-06 interpro_id=IPR010994 interpro_description=RuvA domain 2-like)
ACD22_86_16
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

16973..17248
DNA (276bp) protein (92aa)
HTH_3 (db=HMMPfam db_id=PF01381 from=9 to=60 evalue=5.0e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=8 to=63 evalue=1.8e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=63 evalue=6.4e-11 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=5 to=67 evalue=1.1e-09)
ACD22_86_17
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists


comp(17245..17667)
DNA (423bp) protein (141aa)
hypothetical protein
Ribosomal_S9 (db=HMMPfam db_id=PF00380 from=17 to=140 evalue=6.6e-38 interpro_id=IPR000754 interpro_description=Ribosomal protein S9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=11 to=140 evalue=4.7e-37 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=10 to=140 evalue=1.5e-33 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
ACD22_86_18

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comp(17686..18108)
DNA (423bp) protein (141aa)
rplM; 50S ribosomal protein L13
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=4 to=139 evalue=3.5e-53 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=16 to=139 evalue=6.5e-44 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545 from=3 to=136 evalue=3.3e-42 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_86_19

Not on your lists


comp(18112..18552)
DNA (441bp) protein (147aa)
rplQ; 50S ribosomal protein L17
seg (db=Seg db_id=seg from=122 to=146)
coiled-coil (db=Coil db_id=coil from=123 to=147 evalue=NA)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=143 evalue=9.8e-40)
ACD22_86_20

Not on your lists

comp(18577..19509)
DNA (933bp) protein (311aa)
DNA-directed RNA polymerase subunit alpha
seg (db=Seg db_id=seg from=293 to=306)
seg (db=Seg db_id=seg from=226 to=236)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=19 to=306 evalue=3.3e-94 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD22_86_21
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists


comp(19522..20124)
DNA (603bp) protein (201aa)
hypothetical protein
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=96 to=120 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=200 evalue=4.0e-63 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=200 evalue=3.2e-58)
ACD22_86_22

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comp(20124..20513)
DNA (390bp) protein (130aa)
hypothetical protein
seg (db=Seg db_id=seg from=2 to=14)
seg (db=Seg db_id=seg from=45 to=58)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=97 to=119 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
ACD22_86_23

Not on your lists


comp(20527..20913)
DNA (387bp) protein (129aa)
Ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQN7_9FIRM (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=65.77 coverage=84.4961240310078)
seg (db=Seg db_id=seg from=112 to=128)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=89 to=102 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD22_86_24

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comp(21049..21273)
DNA (225bp) protein (75aa)
infA; translation initiation factor IF-1
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=4 to=73 evalue=2.4e-29 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=73 evalue=1.0e-20 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=2 to=73 evalue=1.4e-18 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD22_86_25

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21376..22656
DNA (1281bp) protein (427aa)
hypothetical protein
hypothetical protein
Seryl-tRNA synthetase n=1 Tax=Bacillus tusciae DSM 2912 RepID=D5WTU4_9BACL (db=UNIREF evalue=1.0e-97 bit_score=360.0 identity=47.36 coverage=96.7213114754098)
seg (db=Seg db_id=seg from=30 to=43)
ACD22_86_26

Not on your lists

22663..23352
DNA (690bp) protein (230aa)
hypothetical protein
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=11 to=215 evalue=1.6e-28)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=47 to=214 evalue=9.6e-18)
Spermine_synth (db=HMMPfam db_id=PF01564 from=24 to=226 evalue=7.0e-11 interpro_id=IPR001045 interpro_description=Spermine synthase GO=Molecular Function: catalytic activity (GO:0003824))
ACD22_86_27

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23353..24186
DNA (834bp) protein (278aa)
UDP-diphosphatase
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
ACD22_86_28

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24197..26755
DNA (2559bp) protein (853aa)
hypothetical protein
hypothetical protein
Protein translocase subunit secA n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY62_THERP (db=UNIREF evalue=0.0 bit_score=786.0 identity=49.72 coverage=98.8276670574443)
seg (db=Seg db_id=seg from=47 to=64)
ACD22_86_29
RBG_16_WWE3_37_10_curated, WWE3, Bacteria

Not on your lists

27091..27549
DNA (459bp) protein (153aa)
hypothetical protein
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=7 to=153 evalue=7.1e-21)
RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) (db=HMMPanther db_id=PTHR22807:SF12 from=79 to=153 evalue=9.1e-20)
NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING (db=HMMPanther db_id=PTHR22807 from=79 to=153 evalue=9.1e-20)
Displaying 29 items

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