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ACD28_21

Alias: ACD28_31467.26726.12

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_21_1
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

61..1701
DNA (1641bp) protein (547aa)
pyrG; CTP synthetase (EC:6.3.4.2)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=2 Tax=Roseiflexus RepID=PYRG_ROSS1 (db=UNIREF evalue=2.0e-170 bit_score=602.0 identity=57.01 coverage=97.8062157221207)
seg (db=Seg db_id=seg from=119 to=136)
ACD28_21_2

Not on your lists

1673..3088
DNA (1416bp) protein (472aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=446 to=468)
transmembrane_regions (db=TMHMM db_id=tmhmm from=412 to=434)
transmembrane_regions (db=TMHMM db_id=tmhmm from=380 to=402)
seg (db=Seg db_id=seg from=423 to=434)
ACD28_21_3

Not on your lists

3095..3877
DNA (783bp) protein (261aa)
prolipoprotein diacylglyceryl transferase
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
seg (db=Seg db_id=seg from=49 to=62)
ACD28_21_4
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

3889..4329
DNA (441bp) protein (147aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
transmembrane_regions (db=TMHMM db_id=tmhmm from=55 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=125 to=146)
ACD28_21_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4410..4622
DNA (213bp) protein (71aa)
4410..4622 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_21_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4594..5037
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KWE3_9FIRM (db=UNIREF evalue=7.0e-17 bit_score=89.4 identity=47.22 coverage=67.5675675675676)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=104)
ACD28_21_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

5151..7412
DNA (2262bp) protein (754aa)
seg (db=Seg db_id=seg from=2 to=15)
coiled-coil (db=Coil db_id=coil from=660 to=681 evalue=NA)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_21_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7563..8060)
DNA (498bp) protein (166aa)
transcription elongation factor GreA
coiled-coil (db=Coil db_id=coil from=20 to=41 evalue=NA)
coiled-coil (db=Coil db_id=coil from=57 to=78 evalue=NA)
GREAB_2 (db=PatternScan db_id=PS00830 from=130 to=146 evalue=0.0 interpro_id=IPR018151 interpro_description=Transcription elongation factor, GreA/GreB, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD28_21_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(8105..9265)
DNA (1161bp) protein (387aa)
rpoD3; RNA polymerase factor sigma-70 RpoD (EC:2.7.7.6)
rpoD3; RNA polymerase factor sigma-70 RpoD (EC:2.7.7.6)
RNA polymerase sigma factor n=3 Tax=Clostridium thermocellum RepID=A3DDV0_CLOTH (db=UNIREF evalue=4.0e-105 bit_score=385.0 identity=57.02 coverage=86.5633074935401)
seg (db=Seg db_id=seg from=87 to=102)
ACD28_21_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9319..9432)
DNA (114bp) protein (38aa)
9319..9432 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_21_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(9461..11245)
DNA (1785bp) protein (595aa)
dnaG; DNA primase (EC:2.7.7.-)
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=5 Tax=Dehalococcoides RepID=Q3Z903_DEHE1 (db=UNIREF evalue=5.0e-90 bit_score=335.0 identity=36.19 coverage=91.2605042016807)
dnaG: DNA primase (db=HMMTigr db_id=TIGR01391 from=1 to=415 evalue=9.0e-126 interpro_id=IPR006295 interpro_description=DNA primase, DnaG GO=Molecular Function: DNA primase activity (GO:0003896), Biological Process: DNA replication, synthesis of RNA primer (GO:0006269))
ACD28_21_12

Not on your lists

comp(11266..12339)
DNA (1074bp) protein (358aa)
glycosyl transferase family protein
Glycosyl transferase, family 4 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRC3_9FIRM (db=UNIREF evalue=6.0e-46 bit_score=188.0 identity=35.91 coverage=87.9888268156425)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=177 to=196)
ACD28_21_13
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(12391..13260)
DNA (870bp) protein (290aa)
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
TruB: tRNA pseudouridine synthase B (db=HMMTigr db_id=TIGR00431 from=7 to=216 evalue=4.4e-83 interpro_id=IPR014780 interpro_description=Pseudouridine synthase II, TruB, N-terminal, bacterial-type GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=5 to=253 evalue=2.9e-74 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
TruB_N (db=HMMPfam db_id=PF01509 from=29 to=177 evalue=3.2e-52 interpro_id=IPR002501 interpro_description=Pseudouridine synthase II, TruB, N-terminal GO=Biological Process: RNA processing (GO:0006396))
ACD28_21_14
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(13415..14758)
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramyl tripeptide synthetase
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=43 to=428 evalue=2.5e-127)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=43 to=428 evalue=2.5e-127)
murE: UDP-N-acetylmuramyl-tripeptide synthet (db=HMMTigr db_id=TIGR01085 from=1 to=426 evalue=2.2e-121 interpro_id=IPR005761 interpro_description=UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: peptidoglycan-based cell wall biogenesis (GO:0009273), Mole
ACD28_21_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(14923..15213)
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=69 to=82)
Flavokinase (db=HMMPfam db_id=PF01687 from=4 to=66 evalue=7.2e-14 interpro_id=IPR015865 interpro_description=Riboflavin kinase GO=Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
Riboflavin kinase-like (db=superfamily db_id=SSF82114 from=3 to=68 evalue=9.7e-12 interpro_id=IPR015865 interpro_description=Riboflavin kinase GO=Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
no description (db=Gene3D db_id=G3DSA:2.40.30.30 from=2 to=65 evalue=2.5e-09 interpro_id=IPR015865 interpro_description=Riboflavin kinase GO=Molecular Function: riboflavin kinase activity (GO:0008531), Biological Process: riboflavin biosynthetic process (GO:0009231))
ACD28_21_16
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

15263..15502
DNA (240bp) protein (80aa)
15263..15502 + (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_21_17

Not on your lists

15499..15624
DNA (126bp) protein (42aa)
15499..15624 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD93217.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_21_18

Not on your lists

comp(15588..16907)
DNA (1320bp) protein (440aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=225 to=244)
transmembrane_regions (db=TMHMM db_id=tmhmm from=204 to=221)
transmembrane_regions (db=TMHMM db_id=tmhmm from=175 to=192)
seg (db=Seg db_id=seg from=347 to=360)
ACD28_21_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

17004..20600
DNA (3597bp) protein (1199aa)
seg (db=Seg db_id=seg from=1167 to=1183)
seg (db=Seg db_id=seg from=949 to=976)
seg (db=Seg db_id=seg from=900 to=920)
seg (db=Seg db_id=seg from=330 to=348)
ACD28_21_20
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(20622..21281)
DNA (660bp) protein (220aa)
triosephosphate isomerase
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=2 to=218 evalue=2.4e-58 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
tim: triose-phosphate isomerase (db=HMMTigr db_id=TIGR00419 from=5 to=205 evalue=5.7e-49 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
Triosephosphate isomerase (TIM) (db=superfamily db_id=SSF51351 from=1 to=214 evalue=1.7e-36 interpro_id=IPR000652 interpro_description=Triosephosphate isomerase GO=Molecular Function: triose-phosphate isomerase activity (GO:0004807), Biological Process: metabolic process (GO:0008152))
ACD28_21_21
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

21396..23738
DNA (2343bp) protein (781aa)
seg (db=Seg db_id=seg from=745 to=780)
seg (db=Seg db_id=seg from=355 to=364)
seg (db=Seg db_id=seg from=31 to=42)
seg (db=Seg db_id=seg from=2 to=16)
ACD28_21_22

Not on your lists

23771..26764
DNA (2994bp) protein (998aa)
seg (db=Seg db_id=seg from=166 to=178)
seg (db=Seg db_id=seg from=606 to=624)
Uncharacterized protein {ECO:0000313|EMBL:EKD93215.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 22 items

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