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ACD28_55

Alias: ACD28_23965.29365.11

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_55_1

Not on your lists

comp(2..1057)
DNA (1056bp) protein (352aa)
putative sulfurtransferase
putative sulfurtransferase
Putative uncharacterized protein yceA n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GVL9_FLAPJ (db=UNIREF evalue=3.0e-97 bit_score=358.0 identity=50.15 coverage=91.1931818181818)
coiled-coil (db=Coil db_id=coil from=5 to=26 evalue=NA)
ACD28_55_2
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1189..1488
DNA (300bp) protein (100aa)
seg (db=Seg db_id=seg from=68 to=81)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
coiled-coil (db=Coil db_id=coil from=39 to=70 evalue=NA)
coiled-coil (db=Coil db_id=coil from=10 to=31 evalue=NA)
ACD28_55_3
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1491..2753
DNA (1263bp) protein (421aa)
hypothetical protein
seg (db=Seg db_id=seg from=400 to=415)
seg (db=Seg db_id=seg from=113 to=128)
seg (db=Seg db_id=seg from=66 to=78)
ACD28_55_4
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(2773..3090)
DNA (318bp) protein (106aa)
rhodanese-like protein
Rhodanese/Cell cycle control phosphatase (db=superfamily db_id=SSF52821 from=1 to=105 evalue=1.8e-30 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=HMMSmart db_id=SM00450 from=7 to=102 evalue=5.4e-25 interpro_id=IPR001763 interpro_description=Rhodanese-like)
no description (db=Gene3D db_id=G3DSA:3.40.250.10 from=1 to=105 evalue=2.8e-24 interpro_id=IPR001763 interpro_description=Rhodanese-like)
ACD28_55_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

3189..4157
DNA (969bp) protein (323aa)
TPR-like (db=superfamily db_id=SSF48452 from=79 to=236 evalue=5.6e-07)
TPR-like (db=superfamily db_id=SSF48452 from=138 to=303 evalue=0.00028)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(4328..5167)
DNA (840bp) protein (280aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=254 to=276)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=241)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=206)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=133)
ACD28_55_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

5313..5777
DNA (465bp) protein (155aa)
bcp-1; bacterioferritin comigratory protein, thiol peroxidase
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=2 to=151 evalue=5.4e-65)
BACTERIOFERRITIN COMIGRATORY PROTEIN (db=HMMPanther db_id=PTHR10681:SF5 from=2 to=151 evalue=5.4e-65)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=151 evalue=1.3e-55 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ACD28_55_8
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

5829..6065
DNA (237bp) protein (79aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=25)
seg (db=Seg db_id=seg from=49 to=68)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_9
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

6062..6592
DNA (531bp) protein (177aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_10
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(6635..6925)
DNA (291bp) protein (97aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
seg (db=Seg db_id=seg from=7 to=21)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_11
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(7033..7512)
DNA (480bp) protein (160aa)
YbaK/prolyl-tRNA synthetase associated region n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYS5_CLOB8 (db=UNIREF evalue=8.0e-37 bit_score=155.0 identity=46.2 coverage=98.125)
YbaK/prolyl-tRNA synthetase associated region
no description (db=Gene3D db_id=G3DSA:3.90.960.10 from=2 to=159 evalue=1.9e-42 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
YbaK/ProRS associated domain (db=superfamily db_id=SSF55826 from=1 to=159 evalue=3.1e-40 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
ACD28_55_12

Not on your lists

comp(7665..11972)
DNA (4308bp) protein (1436aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS (db=KEGG evalue=2.0e-08 bit_score=65.9 identity=23.01 coverage=22.7019498607242)
seg (db=Seg db_id=seg from=674 to=688)
seg (db=Seg db_id=seg from=750 to=761)
coiled-coil (db=Coil db_id=coil from=667 to=688 evalue=NA)
ACD28_55_13

Not on your lists

12020..12898
DNA (879bp) protein (293aa)
12020..12898 + (rbs_motif=TAA rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93408.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_55_14

Not on your lists

12987..16964
DNA (3978bp) protein (1326aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=1069 to=1080)
seg (db=Seg db_id=seg from=797 to=811)
ACD28_55_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(17014..17430)
DNA (417bp) protein (139aa)
prfA3; peptide chain release factor 1
Class I peptide chain release factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174694D (db=UNIREF evalue=2.0e-18 bit_score=94.4 identity=44.03 coverage=95.6834532374101)
seg (db=Seg db_id=seg from=94 to=113)
coiled-coil (db=Coil db_id=coil from=100 to=131 evalue=NA)
ACD28_55_16

Not on your lists

17539..17841
DNA (303bp) protein (101aa)
seg (db=Seg db_id=seg from=24 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKD93411.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_55_17
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

17864..18073
DNA (210bp) protein (70aa)
17864..18073 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_18
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

18119..19204
DNA (1086bp) protein (362aa)
18119..19204 + (rbs_motif=TAA rbs_spacer=6bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_19
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(19265..20191)
DNA (927bp) protein (309aa)
19265..20191 - (rbs_motif=TAA rbs_spacer=14bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_20
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

20423..20701
DNA (279bp) protein (93aa)
20423..20701 + (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_55_21

Not on your lists

20731..21750
DNA (1020bp) protein (340aa)
slpA; S-layer protein
S-layer glycoprotein protein, contains three N-terminal SLH domains n=2 Tax=Bacillus RepID=D3FZN5_BACPE (db=UNIREF evalue=2.0e-20 bit_score=103.0 identity=36.07 coverage=52.3529411764706)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Lamin A/C globular tail domain (db=superfamily db_id=SSF74853 from=228 to=339 evalue=4.6e-11)
ACD28_55_22

Not on your lists

21839..23377
DNA (1539bp) protein (513aa)
hypothetical protein from phage origin (db=KEGG evalue=4.0e-09 bit_score=66.6 identity=27.59 coverage=30.7992202729045)
seg (db=Seg db_id=seg from=277 to=288)
coiled-coil (db=Coil db_id=coil from=14 to=46 evalue=NA)
Nucleotidyltransferase (db=superfamily db_id=SSF81301 from=11 to=196 evalue=1.8e-21)
ACD28_55_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

23387..23887
DNA (501bp) protein (167aa)
seg (db=Seg db_id=seg from=137 to=160)
seg (db=Seg db_id=seg from=125 to=132)
coiled-coil (db=Coil db_id=coil from=139 to=160 evalue=NA)
Putative uncharacterized protein Tax=GWA2_PER_44_7
ACD28_55_24
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

23910..25502
DNA (1593bp) protein (531aa)
Resolvase protein
seg (db=Seg db_id=seg from=104 to=117)
seg (db=Seg db_id=seg from=439 to=453)
no description (db=HMMSmart db_id=SM00857 from=15 to=165 evalue=1.2e-27 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
ACD28_55_25
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(25634..25852)
DNA (219bp) protein (73aa)
excinuclease ABC subunit C
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:KKT77065.1}; TaxID=1619057 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_44_7.;"
ACD28_55_26
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists


comp(26209..26688)
DNA (480bp) protein (160aa)
seg (db=Seg db_id=seg from=101 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
S20: ribosomal protein S20 (db=HMMTigr db_id=TIGR00029 from=22 to=108 evalue=6.7e-21 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S20p (db=HMMPfam db_id=PF01649 from=25 to=105 evalue=3.5e-18 interpro_id=IPR002583 interpro_description=Ribosomal protein S20 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD28_55_27
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

26785..27450
DNA (666bp) protein (222aa)
seg (db=Seg db_id=seg from=10 to=23)
seg (db=Seg db_id=seg from=133 to=148)
seg (db=Seg db_id=seg from=193 to=219)
Bacterioferritin comigratory protein Tax=GWA2_PER_44_7
ACD28_55_28

Not on your lists

27624..29270
DNA (1647bp) protein (549aa)
Prephenate dehydrogenase
PREPHENATE_DEHYDR_2 (db=PatternScan db_id=PS00858 from=496 to=503 evalue=0.0 interpro_id=IPR018528 interpro_description=Prephenate dehydratase, conserved site GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
PREPHENATE DEHYDRATASE (P PROTEIN) (db=HMMPanther db_id=PTHR21022 from=277 to=544 evalue=4.3e-68)
PDT (db=HMMPfam db_id=PF00800 from=277 to=456 evalue=1.9e-50 interpro_id=IPR001086 interpro_description=Prephenate dehydratase GO=Molecular Function: prephenate dehydratase activity (GO:0004664), Biological Process: L-phenylalanine biosynthetic process (GO:0009094))
ACD28_55_29

Not on your lists

29323..29403
DNA (81bp) protein (27aa)
29323..29403 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD93393.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 29 items

View Taxonomy