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ACD3_20

Alias: ACD3_1163.15871.59

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_20_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

1..816
DNA (816bp) protein (272aa)
seg (db=Seg db_id=seg from=233 to=245)
Fib_succ_major (db=HMMPfam db_id=PF09603 from=103 to=270 evalue=1.9e-12 interpro_id=IPR011871 interpro_description=Fibrobacter succinogenes major paralogous domain)
seg 233..245 Tax=ACD3
ACD3_20_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

1054..4647
DNA (3594bp) protein (1198aa)
UPI0001D5B34C related cluster n=1 Tax=unknown RepID=UPI0001D5B34C (db=UNIREF evalue=0.0 bit_score=1053.0 identity=47.1 coverage=89.5659432387312)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
seg (db=Seg db_id=seg from=682 to=695)
ACD3_20_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

4680..8687
DNA (4008bp) protein (1336aa)
DNA-directed RNA polymerase subunit beta' n=5 Tax=Dehalococcoides RepID=RPOC_DEHSC (db=UNIREF evalue=0.0 bit_score=1024.0 identity=43.0 coverage=94.0119760479042)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
coiled-coil (db=Coil db_id=coil from=230 to=251 evalue=NA)
ACD3_20_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

10073..10462
DNA (390bp) protein (130aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
seg (db=Seg db_id=seg from=101 to=110)
transmembrane_regions 100..122 Tax=ACD3
ACD3_20_5
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(10540..12111)
DNA (1572bp) protein (524aa)
seg (db=Seg db_id=seg from=418 to=432)
seg (db=Seg db_id=seg from=13 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=44 evalue=4.2e-13)
ACD3_20_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(12192..13829)
DNA (1638bp) protein (546aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=12 to=33)
seg (db=Seg db_id=seg from=3 to=10)
seg (db=Seg db_id=seg from=298 to=310)
ACD3_20_7
unknown

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comp(13907..14515)
DNA (609bp) protein (203aa)
probable transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25B3 (db=UNIREF evalue=3.0e-12 bit_score=75.1 identity=31.22 coverage=89.1625615763547)
coiled-coil (db=Coil db_id=coil from=38 to=59 evalue=NA)
probable transcriptional regulator n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25B3 Tax=ACD3
transcriptional regulator
ACD3_20_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(14575..14712)
DNA (138bp) protein (46aa)
14575..14712 - (rbs_motif=TAA rbs_spacer=7bp)
hypothetical protein Tax=ACD3
ACD3_20_9

Not on your lists


14809..15492
DNA (684bp) protein (228aa)
50S ribosomal protein L1
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=3 to=227 evalue=3.1e-97 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein, L1p/L1a/L10e/organellar L1 types (db=HMMPIR db_id=PIRSF002155 from=1 to=227 evalue=2.6e-83 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
50S RIBOSOMAL PROTEIN L1P (db=HMMPanther db_id=PTHR23105:SF5 from=21 to=225 evalue=1.7e-71)
Displaying 9 items

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