Alias: ACD5_40991.17750.10
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD5_51_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(1..132)
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1..132 - (rbs_motif=AAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25344.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_2
uncultured bacterium, Bacteria
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Not on your lists |
294..740
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smpB; ssrA RNA (tmRNA)-binding protein
SSRP (db=PatternScan db_id=PS01317 from=22 to=34 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=3 to=146 evalue=5.7e-68 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=1 to=128 evalue=7.5e-43 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
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ACD5_51_3
uncultured bacterium, Bacteria
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Not on your lists |
1652..2086
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translation initiation factor IF-3
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=1 to=139 evalue=1.1e-30 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=142 evalue=2.0e-25 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_C (db=HMMPfam db_id=PF00707 from=54 to=129 evalue=9.1e-19 interpro_id=IPR019815 interpro_description=Translation initiation factor 3, C-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
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ACD5_51_4
uncultured bacterium, Bacteria
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Not on your lists |
2151..2357
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seg (db=Seg db_id=seg from=3 to=18)
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=9.1e-14)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=1.4e-10 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=61 evalue=2.1e-09 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD5_51_5
uncultured bacterium, Bacteria
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Not on your lists |
2468..2857
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rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=69 to=85 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=16 to=129 evalue=1.7e-41 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=17 to=123 evalue=4.0e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD5_51_6
uncultured bacterium, Bacteria
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Not on your lists |
comp(3223..3330)
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3223..3330 - (rbs_motif=AAAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25336.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(3357..4073)
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hypothetical protein
HAD-like (db=superfamily db_id=SSF56784 from=3 to=234 evalue=2.1e-17)
PHOSPHOSERINE PHOSPHATASE (db=HMMPanther db_id=PTHR10000 from=98 to=218 evalue=1.7e-14)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=98 to=211 evalue=8.3e-12)
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ACD5_51_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(4121..5494)
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PAS/PAC sensor signal transduction histidine kinase
seg (db=Seg db_id=seg from=194 to=215)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=18 to=40)
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ACD5_51_9
uncultured bacterium, Bacteria
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Not on your lists |
comp(5478..6581)
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seg (db=Seg db_id=seg from=145 to=158)
seg (db=Seg db_id=seg from=64 to=77)
seg (db=Seg db_id=seg from=29 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=334 to=356)
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ACD5_51_10
uncultured bacterium, Bacteria
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Not on your lists |
comp(6607..7659)
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seg (db=Seg db_id=seg from=2 to=11)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=22 to=40)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=76 to=334 evalue=1.1e-25 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
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ACD5_51_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(7741..8679)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
seg (db=Seg db_id=seg from=276 to=289)
seg (db=Seg db_id=seg from=210 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
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ACD5_51_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(8854..9588)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=48)
Uncharacterized protein {ECO:0000313|EMBL:EKE25322.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_13
uncultured bacterium, Bacteria
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Not on your lists |
comp(9581..9733)
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9581..9733 - (rbs_motif=TAAAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25323.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_14
uncultured bacterium, Bacteria
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Not on your lists |
comp(9828..10850)
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coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
seg (db=Seg db_id=seg from=108 to=122)
Uncharacterized protein {ECO:0000313|EMBL:EKE25324.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_15
uncultured bacterium, Bacteria
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Not on your lists |
comp(10943..11398)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=76 to=91)
seg (db=Seg db_id=seg from=21 to=38)
GLUTAREDOXIN_2 (db=ProfileScan db_id=PS51354 from=51 to=151 evalue=8.796 interpro_id=IPR002109 interpro_description=Glutaredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
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ACD5_51_16
uncultured bacterium, Bacteria
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Not on your lists |
comp(11470..12345)
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prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
seg (db=Seg db_id=seg from=211 to=225)
seg (db=Seg db_id=seg from=45 to=53)
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ACD5_51_17
uncultured bacterium, Bacteria
|
Not on your lists |
comp(12348..13403)
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hypothetical protein
seg (db=Seg db_id=seg from=33 to=43)
seg (db=Seg db_id=seg from=156 to=172)
seg (db=Seg db_id=seg from=271 to=285)
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ACD5_51_18
uncultured bacterium, Bacteria
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Not on your lists |
13487..14197
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Ydjc, 1810015A11Rik, 4930521M19Rik, MGC144470; YdjC homolog (bacterial) (db=KEGG evalue=2.0e-10 bit_score=69.7 identity=24.84 coverage=62.4472573839662)
seg (db=Seg db_id=seg from=189 to=199)
YdjC (db=HMMPfam db_id=PF04794 from=11 to=227 evalue=1.9e-30 interpro_id=IPR006879 interpro_description=YdjC-like protein)
Ydjc, 1810015A11Rik, 4930521M19Rik, MGC144470; YdjC homolog (bacterial) alias=ACD5_C00051G00018,ACD5_40991.17750.10G0018,ACD5_40991.17750.10_18 id=88541 tax=ACD5 species=unknown genus=unknown taxon_order=Rodentia taxon_class=Mammalia phylum=Chordata organism_group=OD1-i organism_desc=OD1-i
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ACD5_51_19
uncultured bacterium, Bacteria
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Not on your lists |
comp(14232..14846)
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
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ACD5_51_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(14900..15433)
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seg (db=Seg db_id=seg from=48 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=63)
Uncharacterized protein {ECO:0000313|EMBL:EKE25330.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_21
uncultured bacterium, Bacteria
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Not on your lists |
15561..15971
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15561..15971 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25331.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_22
uncultured bacterium, Bacteria
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Not on your lists |
comp(16069..16842)
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Transcriptional regulator, TrmB
seg (db=Seg db_id=seg from=130 to=141)
TrmB (db=HMMPfam db_id=PF01978 from=6 to=73 evalue=1.9e-15 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
transcriptional regulator, TrmB alias=ACD5_C00051G00022,ACD5_40991.17750.10G0022,ACD5_40991.17750.10_22 id=88538 tax=ACD5 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
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ACD5_51_23
uncultured bacterium, Bacteria
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Not on your lists |
17013..17228
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17013..17228 + (rbs_motif=TAAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25333.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_24
uncultured bacterium, Bacteria
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Not on your lists |
17372..17554
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17372..17554 + (rbs_motif=AAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25334.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD5_51_25
uncultured bacterium, Bacteria
|
Not on your lists |
comp(17508..17726)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
Uncharacterized protein {ECO:0000313|EMBL:EKE25335.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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