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ACD5_51

Alias: ACD5_40991.17750.10

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD5_51_1

Not on your lists

comp(1..132)
DNA (132bp) protein (44aa)
1..132 - (rbs_motif=AAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25344.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_2

Not on your lists

294..740
DNA (447bp) protein (149aa)
smpB; ssrA RNA (tmRNA)-binding protein
SSRP (db=PatternScan db_id=PS01317 from=22 to=34 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
smpB: SsrA-binding protein (db=HMMTigr db_id=TIGR00086 from=3 to=146 evalue=5.7e-68 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
Small protein B (SmpB) (db=superfamily db_id=SSF74982 from=1 to=128 evalue=7.5e-43 interpro_id=IPR000037 interpro_description=SsrA-binding protein GO=Molecular Function: RNA binding (GO:0003723), Biological Process: translation (GO:0006412))
ACD5_51_3

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1652..2086
DNA (435bp) protein (145aa)
translation initiation factor IF-3
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=1 to=139 evalue=1.1e-30 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=1 to=142 evalue=2.0e-25 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_C (db=HMMPfam db_id=PF00707 from=54 to=129 evalue=9.1e-19 interpro_id=IPR019815 interpro_description=Translation initiation factor 3, C-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD5_51_4

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2151..2357
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=3 to=18)
L35p-like (db=superfamily db_id=SSF143034 from=2 to=65 evalue=9.1e-14)
rpmI_bact: ribosomal protein L35 (db=HMMTigr db_id=TIGR00001 from=2 to=64 evalue=1.4e-10 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=61 evalue=2.1e-09 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD5_51_5

Not on your lists


2468..2857
DNA (390bp) protein (130aa)
rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=69 to=85 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=16 to=129 evalue=1.7e-41 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=17 to=123 evalue=4.0e-36 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD5_51_6

Not on your lists

comp(3223..3330)
DNA (108bp) protein (36aa)
3223..3330 - (rbs_motif=AAAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25336.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_7

Not on your lists

comp(3357..4073)
DNA (717bp) protein (239aa)
hypothetical protein
HAD-like (db=superfamily db_id=SSF56784 from=3 to=234 evalue=2.1e-17)
PHOSPHOSERINE PHOSPHATASE (db=HMMPanther db_id=PTHR10000 from=98 to=218 evalue=1.7e-14)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=98 to=211 evalue=8.3e-12)
ACD5_51_8

Not on your lists

comp(4121..5494)
DNA (1374bp) protein (458aa)
PAS/PAC sensor signal transduction histidine kinase
seg (db=Seg db_id=seg from=194 to=215)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
transmembrane_regions (db=TMHMM db_id=tmhmm from=18 to=40)
ACD5_51_9

Not on your lists

comp(5478..6581)
DNA (1104bp) protein (368aa)
seg (db=Seg db_id=seg from=145 to=158)
seg (db=Seg db_id=seg from=64 to=77)
seg (db=Seg db_id=seg from=29 to=49)
transmembrane_regions (db=TMHMM db_id=tmhmm from=334 to=356)
ACD5_51_10

Not on your lists

comp(6607..7659)
DNA (1053bp) protein (351aa)
seg (db=Seg db_id=seg from=2 to=11)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=22 to=40)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=76 to=334 evalue=1.1e-25 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, catalytic core)
ACD5_51_11

Not on your lists

comp(7741..8679)
DNA (939bp) protein (313aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
seg (db=Seg db_id=seg from=276 to=289)
seg (db=Seg db_id=seg from=210 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=249 to=271)
ACD5_51_12

Not on your lists

comp(8854..9588)
DNA (735bp) protein (245aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=48)
Uncharacterized protein {ECO:0000313|EMBL:EKE25322.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_13

Not on your lists

comp(9581..9733)
DNA (153bp) protein (51aa)
9581..9733 - (rbs_motif=TAAAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25323.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_14

Not on your lists

comp(9828..10850)
DNA (1023bp) protein (341aa)
coiled-coil (db=Coil db_id=coil from=99 to=120 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=129 to=151)
seg (db=Seg db_id=seg from=108 to=122)
Uncharacterized protein {ECO:0000313|EMBL:EKE25324.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_15

Not on your lists

comp(10943..11398)
DNA (456bp) protein (152aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=76 to=91)
seg (db=Seg db_id=seg from=21 to=38)
GLUTAREDOXIN_2 (db=ProfileScan db_id=PS51354 from=51 to=151 evalue=8.796 interpro_id=IPR002109 interpro_description=Glutaredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
ACD5_51_16

Not on your lists

comp(11470..12345)
DNA (876bp) protein (292aa)
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
transmembrane_regions (db=TMHMM db_id=tmhmm from=196 to=218)
seg (db=Seg db_id=seg from=211 to=225)
seg (db=Seg db_id=seg from=45 to=53)
ACD5_51_17

Not on your lists

comp(12348..13403)
DNA (1056bp) protein (352aa)
hypothetical protein
seg (db=Seg db_id=seg from=33 to=43)
seg (db=Seg db_id=seg from=156 to=172)
seg (db=Seg db_id=seg from=271 to=285)
ACD5_51_18

Not on your lists

13487..14197
DNA (711bp) protein (237aa)
Ydjc, 1810015A11Rik, 4930521M19Rik, MGC144470; YdjC homolog (bacterial) (db=KEGG evalue=2.0e-10 bit_score=69.7 identity=24.84 coverage=62.4472573839662)
seg (db=Seg db_id=seg from=189 to=199)
YdjC (db=HMMPfam db_id=PF04794 from=11 to=227 evalue=1.9e-30 interpro_id=IPR006879 interpro_description=YdjC-like protein)
Ydjc, 1810015A11Rik, 4930521M19Rik, MGC144470; YdjC homolog (bacterial) alias=ACD5_C00051G00018,ACD5_40991.17750.10G0018,ACD5_40991.17750.10_18 id=88541 tax=ACD5 species=unknown genus=unknown taxon_order=Rodentia taxon_class=Mammalia phylum=Chordata organism_group=OD1-i organism_desc=OD1-i
ACD5_51_19

Not on your lists

comp(14232..14846)
DNA (615bp) protein (205aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=179 to=201)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
ACD5_51_20

Not on your lists

comp(14900..15433)
DNA (534bp) protein (178aa)
seg (db=Seg db_id=seg from=48 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=63)
Uncharacterized protein {ECO:0000313|EMBL:EKE25330.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_21

Not on your lists

15561..15971
DNA (411bp) protein (137aa)
15561..15971 + (rbs_motif=TAA rbs_spacer=12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25331.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_22

Not on your lists

comp(16069..16842)
DNA (774bp) protein (258aa)
Transcriptional regulator, TrmB
seg (db=Seg db_id=seg from=130 to=141)
TrmB (db=HMMPfam db_id=PF01978 from=6 to=73 evalue=1.9e-15 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
transcriptional regulator, TrmB alias=ACD5_C00051G00022,ACD5_40991.17750.10G0022,ACD5_40991.17750.10_22 id=88538 tax=ACD5 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD5_51_23

Not on your lists

17013..17228
DNA (216bp) protein (72aa)
17013..17228 + (rbs_motif=TAAA rbs_spacer=4bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25333.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_24

Not on your lists

17372..17554
DNA (183bp) protein (61aa)
17372..17554 + (rbs_motif=AAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE25334.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD5_51_25

Not on your lists

comp(17508..17726)
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
Uncharacterized protein {ECO:0000313|EMBL:EKE25335.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 25 items

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