ggKbase home page
Advanced Search
Search Help

ACD18

Rifle_ACD_RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated_32_1
In projects: Rifle_ACD  |  all_cpr_genomes  |  ggK_CPR

Consensus taxonomy: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated  →  Magasanikbacteria  →  Parcubacteria  →  Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 43.39 Kbp Bin length: 1.28 Mbp GC content: 31.95 %
Contigs count: 188 Features count: 1286 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 17 BSCG 44 / 51 MC: 8 ASCG 0 / 38

Description

OD1

Displaying items 51-100 of 188 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ACD18_157 ACD18_117225.3584.5
Species: uncultured bacterium (100%)
3 3618 bp 30.13 1.00 67.99
done Jill Banfield (11/15/12)
ACD18_158 ACD18_39124.2976.6
Species: uncultured bacterium (100%)
3 3010 bp 27.04 1.00 93.09
done Jill Banfield (11/15/12)
ACD18_170 ACD18_69666.2917.5
Species: uncultured bacterium (100%)
3 2951 bp 32.29 1.00 63.23
done Jill Banfield (11/15/12)
ACD18_172 ACD18_93916.2863.6
Species: uncultured bacterium (100%)
3 2897 bp 32.17 1.00 78.08
done Jill Banfield (11/15/12)
ACD18_176 ACD18_213564.2067.5
Species: uncultured bacterium (100%)
3 2101 bp 30.65 1.00 80.96
done Jill Banfield (11/15/12)
ACD18_179 ACD18_3421.2544.21
Species: uncultured bacterium (100%)
3 2584 bp 31.70 1.00 89.05
done Jill Banfield (11/15/12)
ACD18_185 ACD18_3768.2383.23
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (66.67%)
3 2423 bp 33.88 1.00 83.20
done Jill Banfield (11/15/12)
ACD18_1 ACD18_121088.2090.5
Species: uncultured bacterium (66.67%)
3 2124 bp 31.26 1.00 67.51
done Jill Banfield (11/15/12)
ACD18_3 ACD18_133091.2099.5
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (66.67%)
3 2133 bp 28.04 1.00 76.51
done Jill Banfield (11/15/12)
ACD18_25 ACD18_24595.2617.5
Species: uncultured bacterium (100%)
3 2651 bp 30.33 1.00 78.42
done Jill Banfield (11/15/12)
ACD18_32 ACD18_24801.2867.5
Species: uncultured bacterium (100%)
4 2901 bp 33.44 1.00 98.45
done Jill Banfield (11/15/12)
ACD18_54 ACD18_230.4448.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (100%)
4 4488 bp 30.79 1.00 95.05
done Jill Banfield (11/15/12)
ACD18_58 ACD18_1753.2742.23
Species: uncultured bacterium (75%)
4 2788 bp 30.24 1.00 98.35
done Jill Banfield (11/15/12)
ACD18_61 ACD18_101906.2675.5
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (50%)
4 2709 bp 34.37 1.00 90.59
done Jill Banfield (11/15/12)
ACD18_62 ACD18_4449.4073.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 4113 bp 31.36 1.00 64.77
done Jill Banfield (11/15/12)
ACD18_63 ACD18_138274.2613.5
Species: uncultured bacterium (100%)
4 2647 bp 31.36 1.00 51.00
done Jill Banfield (11/15/12)
ACD18_67 ACD18_321.5596.22
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (50%)
4 5636 bp 33.16 1.00 85.33
done Jill Banfield (11/15/12)
ACD18_72 ACD18_61444.3138.6
Species: uncultured bacterium (100%)
4 3172 bp 29.26 1.00 95.43
done Jill Banfield (11/15/12)
ACD18_84 ACD18_147591.3316.5
Species: uncultured bacterium (100%)
4 3350 bp 34.45 1.00 55.07
done Jill Banfield (11/15/12)
ACD18_85 ACD18_23352.2242.5
Species: uncultured bacterium (100%)
4 2276 bp 31.33 1.00 91.21
done Jill Banfield (11/15/12)
ACD18_90 ACD18_63338.4447.4
Species: uncultured bacterium (100%)
4 4481 bp 33.81 1.00 71.37
done Jill Banfield (11/15/12)
ACD18_103 ACD18_73586.2203.5
Species: uncultured bacterium (100%)
4 2237 bp 30.98 1.00 84.35
done Jill Banfield (11/15/12)
ACD18_109 ACD18_9134.2010.4
Species: uncultured bacterium (100%)
4 2044 bp 32.00 1.00 88.80
done Jill Banfield (11/15/12)
ACD18_120 ACD18_290611.2174.5
Species: uncultured bacterium (50%)
4 2208 bp 28.85 1.00 91.44
done Jill Banfield (11/15/12)
ACD18_122 ACD18_2578.2216.20
Species: uncultured bacterium (75%)
4 2256 bp 34.44 1.00 84.18
done Jill Banfield (11/15/12)
ACD18_126 ACD18_9324.4953.20
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (50%)
4 4993 bp 33.23 1.00 85.50
done Jill Banfield (11/15/12)
ACD18_129 ACD18_62117.2566.5
Species: uncultured bacterium (100%)
4 2600 bp 29.92 1.00 82.27
done Jill Banfield (11/15/12)
ACD18_139 ACD18_1056.6448.22
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 6488 bp 34.03 1.00 92.15
done Jill Banfield (11/15/12)
ACD18_141 ACD18_378277.2358.5
Species: uncultured bacterium (100%)
4 2392 bp 30.73 1.00 60.58
done Jill Banfield (11/15/12)
ACD18_143 ACD18_8988.9158.22
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (100%)
4 9198 bp 32.56 1.00 92.56
done Jill Banfield (11/15/12)
ACD18_145 ACD18_5212.5553.22
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 5599 bp 31.81 1.00 88.41
done Jill Banfield (11/15/12)
ACD18_146 ACD18_1959.3108.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 3148 bp 34.91 1.00 90.91
done Jill Banfield (11/15/12)
ACD18_147 ACD18_1649.2800.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 2846 bp 31.69 1.00 71.47
done Jill Banfield (11/15/12)
ACD18_150 ACD18_181033.5471.5
Species: uncultured bacterium (75%)
4 5505 bp 29.61 1.00 75.15
done Jill Banfield (11/15/12)
ACD18_152 ACD18_269219.2551.5
Species: uncultured bacterium (100%)
4 2585 bp 30.91 1.00 73.11
done Jill Banfield (11/15/12)
ACD18_154 ACD18_149.4560.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (50%)
4 4606 bp 32.46 1.00 97.83
done Jill Banfield (11/15/12)
ACD18_155 ACD18_562.3279.24
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 3319 bp 31.43 1.00 82.89
done Jill Banfield (11/15/12)
ACD18_171 ACD18_3116.3486.21
Species: uncultured bacterium (100%)
4 3532 bp 34.23 1.00 88.76
done Jill Banfield (11/15/12)
ACD18_186 ACD18_2011.5931.24
Species: uncultured bacterium (100%)
4 5971 bp 35.40 1.00 82.75
done Jill Banfield (11/15/12)
ACD18_12 ACD18_1245.6149.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 6189 bp 32.07 1.00 85.46
done Jill Banfield (11/15/12)
ACD18_13 ACD18_73881.2575.5
Species: uncultured bacterium (100%)
4 2609 bp 32.31 1.00 94.86
done Jill Banfield (11/15/12)
ACD18_14 ACD18_3787.3857.20
Species: uncultured bacterium (100%)
4 3897 bp 33.69 1.00 78.83
done Jill Banfield (11/15/12)
ACD18_19 ACD18_8854.4932.20
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (50%)
4 4972 bp 34.79 1.00 84.65
done Jill Banfield (11/15/12)
ACD18_20 ACD18_3082.2757.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (75%)
4 2803 bp 27.54 1.00 80.06
done Jill Banfield (11/15/12)
ACD18_22 ACD18_23361.2552.17
Species: uncultured bacterium (100%)
4 2592 bp 32.52 1.00 51.27
done Jill Banfield (11/15/12)
ACD18_26 ACD18_459.6426.19
Species: uncultured bacterium (100%)
4 6466 bp 35.26 1.00 93.21
done Jill Banfield (11/15/12)
ACD18_94 ACD18_3772.5116.20
Species: uncultured bacterium (60%)
5 5156 bp 34.91 1.00 72.50
done Jill Banfield (11/15/12)
ACD18_97 ACD18_2585.3696.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (100%)
5 3736 bp 33.86 1.00 88.57
done Jill Banfield (11/15/12)
ACD18_98 ACD18_1639.2740.21
Species: RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated (80%)
5 2786 bp 29.50 1.00 83.78
done Jill Banfield (11/15/12)
ACD18_105 ACD18_384462.2299.4
Species: uncultured bacterium (80%)
5 2333 bp 33.26 1.00 89.24
done Jill Banfield (11/15/12)
Displaying items 51-100 of 188 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.