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RBG_16_DPX2_64_85_RBG_16_scaffold_125

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Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_DPX2_64_85_RBG_16_scaffold_125_1
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..759)
DNA (759bp) protein (253aa)
2-hydroxyglutaryl-CoA dehydratase subunit D Tax=RBG_16_Deltaproteobacteria_64_85_curated
2-hydroxyglutaryl-CoA dehydratase, D-component id=4272694 bin=GWC2_Deltaproteobacteria_66_88 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
2-hydroxyglutaryl-CoA dehydratase subunit D
RBG_16_DPX2_64_85_RBG_16_scaffold_125_2
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(756..1040)
DNA (285bp) protein (95aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
hypothetical protein id=1700101 bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_16_DPX2_64_85_RBG_16_scaffold_125_3
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1124..1918
DNA (795bp) protein (265aa)
glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3] Tax=RBG_16_Deltaproteobacteria_64_85_curated
glutamate racemase (EC:5.1.1.3)
Glutamate racemase id=3516008 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_125_4
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1954..2250
DNA (297bp) protein (99aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=4219610 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_125_5
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2243..2926
DNA (684bp) protein (228aa)
spermidine/putrescine import ATP-binding protein potA (EC:3.6.3.31); K09687 antibiotic transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
spermidine/putrescine import ATP-binding protein potA (EC:3.6.3.31)
ABC transporter ATP-binding protein id=1700095 bin=GWB2_Deltaproteobacteria_65_81 species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
RBG_16_DPX2_64_85_RBG_16_scaffold_125_6
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2926..3813
DNA (888bp) protein (296aa)
id=4219608 Tax=RBG_16_Deltaproteobacteria_64_85_curated
id=4219608 bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_125_7
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3810..4979
DNA (1170bp) protein (390aa)
peptidase M23 Tax=RBG_16_Deltaproteobacteria_64_85_curated
Zinc metalloendopeptidase M23 domain protein id=4219607 bin=GWC2_Proteo_65_14_Ab886 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
membrane-bound metallopeptidase
RBG_16_DPX2_64_85_RBG_16_scaffold_125_8
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5020..6411
DNA (1392bp) protein (464aa)
peptidase S41A, C-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Periplasmic carboxy-terminal processing protease id=1700090 bin=GWB2_Deltaproteobacteria_65_81 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
peptidase S41
RBG_16_DPX2_64_85_RBG_16_scaffold_125_9
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6433..7332
DNA (900bp) protein (300aa)
hypothetical protein; K09798 hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=4443877 bin=GWA2_Deltaproteo_65_63 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_125_10
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7336..8661
DNA (1326bp) protein (442aa)
exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Exodeoxyribonuclease 7 large subunit id=4219604 bin=GWC2_Proteo_65_14_Ab886 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
xseA; exodeoxyribonuclease VII large subunit
RBG_16_DPX2_64_85_RBG_16_scaffold_125_11
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8658..9515
DNA (858bp) protein (286aa)
peptidase M23 Tax=RBG_16_Deltaproteobacteria_64_85_curated
Peptidase, M23/M37 family id=4219547 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
peptidase M23
RBG_16_DPX2_64_85_RBG_16_scaffold_125_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9639..9890
DNA (252bp) protein (84aa)
hypothetical protein; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Exodeoxyribonuclease 7 small subunit id=4219546 bin=GWC2_Proteo_65_14_Ab886 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
exodeoxyribonuclease VII small subunit
RBG_16_DPX2_64_85_RBG_16_scaffold_125_13
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9892..10788
DNA (897bp) protein (299aa)
polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RBG_16_Deltaproteobacteria_64_85_curated
Farnesyl-diphosphate synthase id=4219545 bin=GWC2_Proteo_65_14_Ab886 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
polyprenyl synthetase
RBG_16_DPX2_64_85_RBG_16_scaffold_125_14
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10790..12727
DNA (1938bp) protein (646aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] Tax=RBG_16_Deltaproteobacteria_64_85_curated
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase id=4219544 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_125_15
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12771..13505
DNA (735bp) protein (245aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RBG_16_Deltaproteobacteria_64_85_curated
rRNA methyltransferase, YqxC-related, putative id=4219543 bin=GWC2_Proteo_65_14_Ab886 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
hemolysin A
RBG_16_DPX2_64_85_RBG_16_scaffold_125_16
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13610..14701
DNA (1092bp) protein (364aa)
peptidoglycan-binding LysM Tax=RBG_16_Deltaproteobacteria_64_85_curated
Peptidoglycan-binding LysM id=4443884 bin=GWA2_Deltaproteo_65_63 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Peptidoglycan-binding LysM
RBG_16_DPX2_64_85_RBG_16_scaffold_125_17
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14789..15850
DNA (1062bp) protein (354aa)
DNA protecting protein DprA; K04096 DNA processing protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
DNA protecting protein DprA id=4219541 bin=GWC2_Proteo_65_14_Ab886 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
DNA protecting protein DprA
RBG_16_DPX2_64_85_RBG_16_scaffold_125_18
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15884..18307
DNA (2424bp) protein (808aa)
DNA topoisomerase (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RBG_16_Deltaproteobacteria_64_85_curated
DNA topoisomerase (EC:5.99.1.2)
DNA topoisomerase id=4219540 bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
RBG_16_DPX2_64_85_RBG_16_scaffold_125_19
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18312..19700
DNA (1389bp) protein (463aa)
sigma-54 dependent DNA-binding response regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RBG_16_Deltaproteobacteria_64_85_curated
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=4219539 bin=GWC2_Proteo_65_14_Ab886 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Fis family transcriptional regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_125_20
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19765..20205
DNA (441bp) protein (147aa)
pilA; pilin; K02650 type IV pilus assembly protein PilA Tax=RBG_16_Deltaproteobacteria_64_85_curated
Type IV pilin PilA id=4219538 bin=GWC2_Proteo_65_14_Ab886 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
pilA; pilin
RBG_16_DPX2_64_85_RBG_16_scaffold_125_21
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20273..20785
DNA (513bp) protein (171aa)
pilA; type IV pilin PilA; K02650 type IV pilus assembly protein PilA Tax=RBG_16_Deltaproteobacteria_64_85_curated
Type IV pilin PilA id=2335507 bin=GWA2_Deltaproteo_65_63 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
pilA; type IV pilin PilA
RBG_16_DPX2_64_85_RBG_16_scaffold_125_22
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20949..21869
DNA (921bp) protein (307aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative uncharacterized protein id=2213735 bin=GWB2_Deltaproteobacteria_65_81 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
RBG_16_DPX2_64_85_RBG_16_scaffold_125_23
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21866..22828
DNA (963bp) protein (321aa)
multidrug ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_64_85_curated
ABC-type multidrug transport system, ATPase component id=2939770 bin=GWC2_Deltaproteobacteria_66_88 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
multidrug ABC transporter ATPase
RBG_16_DPX2_64_85_RBG_16_scaffold_125_24
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22800..23606
DNA (807bp) protein (269aa)
putative ABC transporter permease Tax=RBG_16_Deltaproteobacteria_64_85_curated
Putative ABC transport system, permease component id=2213739 bin=GWB2_Deltaproteobacteria_65_81 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
putative ABC transporter permease
RBG_16_DPX2_64_85_RBG_16_scaffold_125_25
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23606..24382
DNA (777bp) protein (259aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RBG_16_Deltaproteobacteria_64_85_curated
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=14623450 bin=bin5_DeltaP species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
pilD; type IV prepilin-like proteins leader peptide processing enzyme
RBG_16_DPX2_64_85_RBG_16_scaffold_125_26
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24379..25857
DNA (1479bp) protein (493aa)
histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_16_Deltaproteobacteria_64_85_curated
histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] id=14623453 bin=bin5_DeltaP species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
histidine kinase
RBG_16_DPX2_64_85_RBG_16_scaffold_125_27
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25850..27250
DNA (1401bp) protein (467aa)
sigma-54-dependent transcriptional response regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
two component sigma-54 specific Fis family transcriptional regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14623454 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
sigma-54-dependent transcriptional response regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_125_28
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27390..27626
DNA (237bp) protein (79aa)
XRE family transcriptional regulator Tax=RBG_16_Deltaproteobacteria_64_85_curated
Transcriptional regulator, XRE family id=3088871 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
RBG_16_DPX2_64_85_RBG_16_scaffold_125_29
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27644..28705
DNA (1062bp) protein (354aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RBG_16_Deltaproteobacteria_64_85_curated
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=14623456 bin=bin5_DeltaP species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
type IV pilus assembly protein PilM
RBG_16_DPX2_64_85_RBG_16_scaffold_125_30
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28702..29250
DNA (549bp) protein (183aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RBG_16_Deltaproteobacteria_64_85_curated
Fimbrial assembly id=2335581 bin=GWA2_Deltaproteo_65_63 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
fimbrial assembly family protein
Displaying items 1-30 of 108 in total

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