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MEL_B2_2

Search features with annotation key words

Displaying items 181-210 of 338 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_2_181
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

172490..173728
DNA (1239bp) protein (413aa)
(db=HMMPfam db_id=PF00392 from=318 to=381 evalue=3.7e-12 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=308 to=409 evalue=2.4e-11)
(db=HMMPfam db_id=PF00392 from=222 to=279 evalue=1.4e-10 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00345 from=225 to=284 evalue=1.5e-10 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
MEL_B2_2_182
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

173728..174462
DNA (735bp) protein (245aa)
173728..174462 + ( gc_cont=0.396)
Uncharacterized protein {ECO:0000313|EMBL:CDC19080.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_183
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

174666..174824
DNA (159bp) protein (53aa)
174666..174824 + ( gc_cont=0.308)
Uncharacterized protein {ECO:0000313|EMBL:CDC19079.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_184
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(174897..175556)
DNA (660bp) protein (220aa)
nitroreductase
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
FMN-dependent nitroreductase-like (db=superfamily db_id=SSF55469 from=11 to=218 evalue=1.8e-40 interpro_id=IPR000415 interpro_description=Nitroreductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
(db=HMMPfam db_id=PF00881 from=18 to=198 evalue=3.9e-31 interpro_id=IPR000415 interpro_description=Nitroreductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
MEL_B2_2_185
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

175572..176312
DNA (741bp) protein (247aa)
hypothetical protein
seg (db=Seg db_id=seg from=13 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
vWA-like (db=superfamily db_id=SSF53300 from=48 to=236 evalue=3.1e-19)
MEL_B2_2_186
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

176347..176742
DNA (396bp) protein (132aa)
(db=HMMPfam db_id=PF03692 from=28 to=115 evalue=3.2e-07 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:CDC19076.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
MEL_B2_2_187
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(176745..176978)
DNA (234bp) protein (78aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Uncharacterized protein {ECO:0000313|EMBL:CDC19075.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_188
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(177014..178009)
DNA (996bp) protein (332aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7AWU0_9FIRM (db=UNIREF evalue=1.3e-14 bit_score=86.0 identity=25.2 coverage=62.65060240963856)
Uncharacterized protein {ECO:0000313|EMBL:CDC19074.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_189
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(178087..178494)
DNA (408bp) protein (136aa)
rpsP; 30S ribosomal protein S16
seg (db=Seg db_id=seg from=83 to=134)
coiled-coil (db=Coil db_id=coil from=83 to=119 evalue=NA)
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=2 to=77 evalue=3.5e-30 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_2_190
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

178791..179141
DNA (351bp) protein (117aa)
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC19071.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_191
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(179138..179782)
DNA (645bp) protein (215aa)
HAD hydrolase, family IA
HAD-like (db=superfamily db_id=SSF56784 from=1 to=214 evalue=7.7e-46 interpro_id=IPR023214 interpro_description=HAD-like domain)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=2 to=214 evalue=5.5e-29 interpro_id=IPR023214 interpro_description=HAD-like domain)
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 (db=HMMPanther db_id=PTHR18901 from=2 to=208 evalue=8.5e-16)
MEL_B2_2_192
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(179795..179989)
DNA (195bp) protein (65aa)
(db=HMMPfam db_id=PF00196 from=9 to=62 evalue=4.6e-10 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=3 to=63 evalue=2.5e-09 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: reg
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=2 to=60 evalue=5.0e-07 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00421 from=6 to=63 evalue=2.1e-05 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
MEL_B2_2_193
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

180564..181202
DNA (639bp) protein (213aa)
CI-HTT; 26 kDa repressor protein
26 kDa repressor protein n=1 Tax=Cronobacter turicensis z3032 RepID=C9Y1M9_CROTZ (db=UNIREF evalue=1.1e-17 bit_score=96.0 identity=30.2 coverage=95.30516431924883)
coiled-coil (db=Coil db_id=coil from=30 to=51 evalue=NA)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=73 to=209 evalue=7.5e-23 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
MEL_B2_2_194
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(181206..181841)
DNA (636bp) protein (212aa)
181206..181841 - ( gc_cont=0.341)
Uncharacterized protein {ECO:0000313|EMBL:CDC19062.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_195
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(181871..185563)
DNA (3693bp) protein (1231aa)
avrB4-1; type III effector AvrB4-1
Type III effector AvrB4-1 n=5 Tax=Pseudomonas savastanoi RepID=E7P6W2_PSESG (db=UNIREF evalue=2.8e-09 bit_score=70.0 identity=33.3 coverage=7.311129163281885)
seg (db=Seg db_id=seg from=531 to=547)
seg (db=Seg db_id=seg from=453 to=465)
MEL_B2_2_196
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(185657..186511)
DNA (855bp) protein (285aa)
ribonuclease yfkH
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=92 to=114)
transmembrane_regions (db=TMHMM db_id=tmhmm from=247 to=269)
MEL_B2_2_197
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(186508..187467)
DNA (960bp) protein (320aa)
RecJ-like phosphoesterase domain-containing protein
DHH phosphoesterases (db=superfamily db_id=SSF64182 from=13 to=319 evalue=5.3e-55)
POLYA POLYMERASE (db=HMMPanther db_id=PTHR13734:SF4 from=4 to=308 evalue=1.1e-43)
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY MEMBER (db=HMMPanther db_id=PTHR13734 from=4 to=308 evalue=1.1e-43)
MEL_B2_2_198
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

187516..188544
DNA (1029bp) protein (343aa)
sodium/calcium exchanger membrane region
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=317 to=339)
MEL_B2_2_199
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(188548..189360)
DNA (813bp) protein (271aa)
family 3 extracellular solute-binding protein
SBP_BACTERIAL_3 (db=PatternScan db_id=PS01039 from=63 to=76 evalue=0.0 interpro_id=IPR018313 interpro_description=Extracellular solute-binding protein, family 3, conserved site GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: outer membrane-bounded periplasmic space (GO:0030288))
no description (db=HMMSmart db_id=SM00062 from=41 to=263 evalue=3.4e-69 interpro_id=IPR001638 interpro_description=Extracellular solute-binding protein, family 3 GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: outer membrane-bounded periplasmic space (GO:0030288))
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=1 to=262 evalue=9.8e-62)
MEL_B2_2_200
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(189376..189912)
DNA (537bp) protein (179aa)
nucleoside recognition domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=124 to=146)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=109)
MEL_B2_2_201
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(189905..190522)
DNA (618bp) protein (206aa)
Spore maturation protein A
seg (db=Seg db_id=seg from=7 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
MEL_B2_2_202
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(190563..192299)
DNA (1737bp) protein (579aa)
Type I secretion outer membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU99_SYNAS (db=UNIREF evalue=0.0 bit_score=215.0 identity=31.4 coverage=70.12089810017271)
type I secretion outer membrane protein
seg (db=Seg db_id=seg from=99 to=130)
seg (db=Seg db_id=seg from=49 to=81)
MEL_B2_2_203
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(192324..195560)
DNA (3237bp) protein (1079aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=6 Tax=Shewanella RepID=B0TJX7_SHEHH (db=UNIREF evalue=0.0 bit_score=905.0 identity=44.7 coverage=94.81000926784058)
hydrophobe/amphiphile efflux-1 (HAE1) family protein
hydrophobe/amphiphile efflux-1 (HAE1) family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=492 to=514)
MEL_B2_2_204
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(195544..196728)
DNA (1185bp) protein (395aa)
Efflux transporter, MFP subunit, AcrA/E family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVJ9_9VIBR (db=UNIREF evalue=0.0 bit_score=234.0 identity=34.8 coverage=92.40506329113924)
RND efflux transporter, MFP subunit
coiled-coil (db=Coil db_id=coil from=108 to=129 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
MEL_B2_2_205
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(196827..197444)
DNA (618bp) protein (206aa)
seg (db=Seg db_id=seg from=106 to=119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=182 to=196)
Pili subunits (db=superfamily db_id=SSF54523 from=10 to=67 evalue=8.9e-10)
MEL_B2_2_206
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(197465..197935)
DNA (471bp) protein (157aa)
txlA; thioredoxin-like protein TxlA
Uncharacterized protein n=4 Tax=Neognathae RepID=E1BUP6_CHICK (db=UNIREF evalue=5.7e-08 bit_score=63.0 identity=31.4 coverage=52.86624203821656)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=8 to=23)
MEL_B2_2_207
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(197938..199176)
DNA (1239bp) protein (413aa)
Glucose-1-phosphate adenylyltransferase n=3 Tax=Anaeromyxobacter RepID=GLGC_ANAD2 (db=UNIREF evalue=0.0 bit_score=507.0 identity=55.6 coverage=97.82082324455206)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
ADP_GLC_PYROPHOSPH_2 (db=PatternScan db_id=PS00809 from=97 to=105 evalue=0.0 interpro_id=IPR005836 interpro_description=ADP-glucose pyrophosphorylase, conserved site GO=Biological Process: glycogen biosynthetic process (GO:0005978))
MEL_B2_2_208
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(199240..200736)
DNA (1497bp) protein (499aa)
seg (db=Seg db_id=seg from=259 to=287)
seg (db=Seg db_id=seg from=146 to=168)
coiled-coil (db=Coil db_id=coil from=189 to=210 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC19042.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_2_209
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria

Not on your lists

200936..202204
DNA (1269bp) protein (423aa)
3-isopropylmalate dehydratase large subunit 1 n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D4W1_PELTS (db=UNIREF evalue=0.0 bit_score=599.0 identity=67.9 coverage=98.58156028368793)
LeuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
LeuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
seg (db=Seg db_id=seg from=401 to=411)
MEL_B2_2_210
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(202213..203934)
DNA (1722bp) protein (574aa)
AMP-dependent synthetase and ligase n=1 Tax=Thermodesulfatator indicus DSM 15286 RepID=F8A9B0_THEID (db=UNIREF evalue=0.0 bit_score=319.0 identity=35.4 coverage=93.90243902439023)
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
seg (db=Seg db_id=seg from=223 to=233)
Displaying items 181-210 of 338 in total

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