name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
MEL_B2_2_151
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(145719..146504)
|
tRNA pseudouridine synthase A
tRNA-pseudouridine synthase A, prokaryotic type (db=HMMPIR db_id=PIRSF001430 from=1 to=261 evalue=3.8e-78 interpro_id=IPR001406 interpro_description=Pseudouridine synthase I, TruA GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
hisT_truA: tRNA pseudouridine synthase A (db=HMMTigr db_id=TIGR00071 from=4 to=249 evalue=1.7e-74 interpro_id=IPR001406 interpro_description=Pseudouridine synthase I, TruA GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=1 to=260 evalue=1.3e-68 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
|
|
MEL_B2_2_152
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(146516..146953)
|
50S ribosomal protein L17
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=145 evalue=1.2e-46 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L17: ribosomal protein L17 (db=HMMTigr db_id=TIGR00059 from=5 to=145 evalue=1.3e-35 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_2_153
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(146999..147985)
|
DNA-directed RNA polymerase subunit alpha n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RPOA_MOOTA (db=UNIREF evalue=0.0 bit_score=301.0 identity=49.8 coverage=89.96960486322189)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
seg (db=Seg db_id=seg from=239 to=249)
|
|
MEL_B2_2_154
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(148026..148625)
|
rpsD; 30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=90 to=114 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=199 evalue=1.1e-93 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=199 evalue=1.7e-60)
|
|
MEL_B2_2_155
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(148751..149137)
|
rpsK; 30S ribosomal protein S11
seg (db=Seg db_id=seg from=61 to=74)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=96 to=118 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=9 to=125 evalue=4.7e-86 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_2_156
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(149188..149553)
|
rpsM; 30S ribosomal protein S13
seg (db=Seg db_id=seg from=42 to=52)
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=114 evalue=3.8e-70 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S/40S RIBOSOMAL PROTEIN (db=HMMPanther db_id=PTHR10871 from=1 to=121 evalue=8.3e-51 interpro_id=IPR001892 interpro_description=Ribosomal protein S13 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_2_157
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(149594..149707)
|
rpmJ; 50S ribosomal protein L36
50S ribosomal protein L36, chloroplastic n=1 Tax=Chlorokybus atmophyticus RepID=RK36_CHLAT (db=UNIREF evalue=3.3e-10 bit_score=69.0 identity=75.7 coverage=94.73684210526315)
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=36 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=37 evalue=3.8e-22 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
|
|
MEL_B2_2_158
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(149773..149988)
|
bacterial translation initiation factor 1 (bIF-1)
Translation initiation factor IF-1 n=213 Tax=Bacteria RepID=IF1_STAA1 (db=UNIREF evalue=1.4e-25 bit_score=121.0 identity=77.8 coverage=97.22222222222221)
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=2 to=70 evalue=1.0e-45 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=70 evalue=4.9e-29 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
|
|
MEL_B2_2_159
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(150520..151134)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=180 to=202)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
|
|
MEL_B2_2_160
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(151156..152499)
|
UPI00020A9ACF related cluster n=1 Tax=unknown RepID=UPI00020A9ACF (db=UNIREF evalue=0.0 bit_score=391.0 identity=46.0 coverage=94.19642857142857)
preprotein translocase subunit SecY
preprotein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
|
|
MEL_B2_2_161
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(152611..153063)
|
rplO; 50S ribosomal protein L15
seg (db=Seg db_id=seg from=136 to=148)
RIBOSOMAL_L15 (db=PatternScan db_id=PS00475 from=114 to=144 evalue=0.0 interpro_id=IPR001196 interpro_description=Ribosomal protein L15, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=6 to=148 evalue=1.1e-51 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
|
|
MEL_B2_2_162
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(153084..153275)
|
hypothetical protein
50S ribosomal protein L30 n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QN75_9BACI (db=UNIREF evalue=2.1e-09 bit_score=67.0 identity=59.3 coverage=82.8125)
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=63 evalue=8.4e-23 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=9 to=63 evalue=8.6e-21 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
|
|
MEL_B2_2_163
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(153307..153945)
|
30S ribosomal protein S5
30S ribosomal protein S5 n=3 Tax=Arthrospira RepID=B5W6R5_SPIMA (db=UNIREF evalue=0.0 bit_score=207.0 identity=60.9 coverage=78.40375586854461)
seg (db=Seg db_id=seg from=2 to=28)
seg (db=Seg db_id=seg from=30 to=45)
|
|
MEL_B2_2_164
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
154204..156408
|
hypothetical protein
seg (db=Seg db_id=seg from=2 to=22)
TPR-like (db=superfamily db_id=SSF48452 from=153 to=490 evalue=7.2e-42)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=270 to=487 evalue=1.0e-41 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
|
|
MEL_B2_2_165
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
156380..157435
|
hypothetical protein
UPF0034 (db=PatternScan db_id=PS01136 from=106 to=124 evalue=0.0 interpro_id=IPR018517 interpro_description=tRNA-dihydrouridine synthase, conserved site GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
tRNA-dihydrouridine synthase (db=HMMPIR db_id=PIRSF006621 from=8 to=338 evalue=6.2e-107 interpro_id=IPR001269 interpro_description=tRNA-dihydrouridine synthase GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA dihydrouridine synthase activity (GO:0017150), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
nifR3_yhdG: putative TIM-barrel protein, n (db=HMMTigr db_id=TIGR00737 from=15 to=333 evalue=8.2e-106 interpro_id=IPR004652 interpro_description=tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO=Biological Process: tRNA processing (GO:0008033), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: flavin adenine dinucleotide binding (GO:0050660), Biological Process: oxidation-reduction process (GO:0055114))
|
|
MEL_B2_2_166
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
157435..157695
|
GIY-YIG domain-containing protein
(db=HMMPfam db_id=PF01541 from=4 to=76 evalue=6.3e-15 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=3 to=86 evalue=1.1e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
no description (db=HMMSmart db_id=SM00465 from=4 to=86 evalue=0.0038 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
|
|
MEL_B2_2_167
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(157692..158987)
|
seg (db=Seg db_id=seg from=370 to=383)
seg (db=Seg db_id=seg from=265 to=276)
seg (db=Seg db_id=seg from=99 to=116)
coiled-coil (db=Coil db_id=coil from=265 to=286 evalue=NA)
|
|
MEL_B2_2_168
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
159217..161025
|
LepA; GTP-binding protein LepA
LepA; GTP-binding protein LepA
Elongation factor 4 n=2 Tax=Microcystis aeruginosa RepID=LEPA_MICAN (db=UNIREF evalue=0.0 bit_score=834.0 identity=66.8 coverage=99.17081260364843)
seg (db=Seg db_id=seg from=565 to=581)
|
|
MEL_B2_2_169
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(161030..161374)
|
Chemotaxis protein CheV (EC:2.7.3.-)
Response regulator n=1 Tax=Micavibrio aeruginosavorus ARL-13 RepID=G2KNM0_MICAA (db=UNIREF evalue=6.2e-20 bit_score=102.0 identity=43.6 coverage=96.52173913043478)
no description (db=HMMSmart db_id=SM00448 from=2 to=110 evalue=2.5e-35 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=114 evalue=1.6e-33 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
|
|
MEL_B2_2_170
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(161377..162663)
|
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=185 to=420 evalue=2.8e-93)
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=185 to=420 evalue=2.8e-93)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase (db=superfamily db_id=SSF55874 from=265 to=426 evalue=5.2e-48 interpro_id=IPR003594 interpro_description=ATPase-like, ATP-binding domain GO=Molecular Function: ATP binding (GO:0005524))
|
|
MEL_B2_2_171
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
162810..163604
|
seg (db=Seg db_id=seg from=26 to=37)
(db=HMMPfam db_id=PF01464 from=121 to=240 evalue=4.9e-11 interpro_id=IPR008258 interpro_description=Lytic transglycosylase-like, catalytic)
Lysozyme-like (db=superfamily db_id=SSF53955 from=110 to=253 evalue=6.2e-11 interpro_id=IPR023346 interpro_description=Lysozyme-like domain)
no description (db=Gene3D db_id=G3DSA:1.10.530.10 from=115 to=229 evalue=2.9e-05)
|
|
MEL_B2_2_172
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(163662..164621)
|
Fructose-1-6-bisphosphate aldolase class II n=1 Tax=Eubacterium limosum KIST612 RepID=E3GFJ6_EUBLK (db=UNIREF evalue=0.0 bit_score=431.0 identity=68.4 coverage=95.0)
fructose-1-6-bisphosphate aldolase class II
fructose-1-6-bisphosphate aldolase class II
seg (db=Seg db_id=seg from=32 to=43)
|
|
MEL_B2_2_173
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
164783..166390
|
GAF sensor-containing diguanylate cyclase
seg (db=Seg db_id=seg from=73 to=87)
seg (db=Seg db_id=seg from=461 to=477)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=365 to=525 evalue=2.4e-56 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signal transduction (GO:0035556))
|
|
MEL_B2_2_174
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
166480..167292
|
hypothetical protein
Glr0059 protein {ECO:0000313|EMBL:CDC19098.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG
hypothetical protein alias=MEL_C2_C00001G00398 id=469804 tax=MEL_C2 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria
|
|
MEL_B2_2_175
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(167295..167822)
|
adenine phosphoribosyltransferase (EC:2.4.2.7)
apt: adenine phosphoribosyltransferase (db=HMMTigr db_id=TIGR01090 from=5 to=172 evalue=5.9e-95 interpro_id=IPR005764 interpro_description=Adenine phosphoribosyl transferase GO=Molecular Function: adenine phosphoribosyltransferase activity (GO:0003999), Cellular Component: cytoplasm (GO:0005737), Biological Process: adenine salvage (GO:0006168))
no description (db=Gene3D db_id=G3DSA:3.40.50.2020 from=1 to=169 evalue=3.6e-59)
PRTase-like (db=superfamily db_id=SSF53271 from=2 to=173 evalue=2.3e-52)
|
|
MEL_B2_2_176
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(167855..169117)
|
O-acetylhomoserine sulfhydrolase n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RYV0_THEOJ (db=UNIREF evalue=0.0 bit_score=517.0 identity=58.1 coverage=98.812351543943)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.47 2.5.1.49)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.47 2.5.1.49)
seg (db=Seg db_id=seg from=64 to=79)
|
|
MEL_B2_2_177
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(169121..169540)
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:CDC19091.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_2_178
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(169556..170629)
|
hypothetical protein
Tetratricopeptide repeat protein n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JN19_MICAN (db=UNIREF evalue=5.6e-35 bit_score=154.0 identity=30.0 coverage=83.5195530726257)
seg (db=Seg db_id=seg from=42 to=53)
coiled-coil (db=Coil db_id=coil from=100 to=128 evalue=NA)
|
|
MEL_B2_2_179
Clostridium sp. CAG:306, Melainabacteria, Bacteria
|
Not on your lists |
comp(170700..171383)
|
170700..171383 - ( gc_cont=0.370)
Uncharacterized protein {ECO:0000313|EMBL:CDC19087.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
|
|
MEL_B2_2_180
unknown
|
Not on your lists |
171561..172379
|
171561..172379 + ( gc_cont=0.354)
|