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MEL_B2_4

Search features with annotation key words

Displaying items 31-60 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_4_31
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(32293..32889)
DNA (597bp) protein (199aa)
Chromate transport protein n=2 Tax=Turicibacter RepID=D4W6B8_9FIRM (db=UNIREF evalue=6.5e-33 bit_score=146.0 identity=41.9 coverage=82.41206030150754)
chromate transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
MEL_B2_4_32
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(32892..34019)
DNA (1128bp) protein (376aa)
lipid-A-disaccharide synthase
(db=HMMPfam db_id=PF02684 from=6 to=365 evalue=5.1e-80 interpro_id=IPR003835 interpro_description=Glycosyl transferase, family 19 GO=Molecular Function: lipid-A-disaccharide synthase activity (GO:0008915), Biological Process: lipid A biosynthetic process (GO:0009245))
lpxB: lipid-A-disaccharide synthase (db=HMMTigr db_id=TIGR00215 from=1 to=374 evalue=1.9e-61 interpro_id=IPR003835 interpro_description=Glycosyl transferase, family 19 GO=Molecular Function: lipid-A-disaccharide synthase activity (GO:0008915), Biological Process: lipid A biosynthetic process (GO:0009245))
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=3 to=375 evalue=3.3e-28)
MEL_B2_4_33
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(34031..34846)
DNA (816bp) protein (272aa)
hypothetical protein
(db=HMMPfam db_id=PF06230 from=64 to=269 evalue=2.3e-62 interpro_id=IPR010415 interpro_description=Protein of unknown function DUF1009)
Uncharacterized protein {ECO:0000313|EMBL:CDC21164.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein; K09949 hypothetical protein alias=MEL_C2_C00014G00006 id=469736 tax=MEL_C2 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres
MEL_B2_4_34
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

34956..35870
DNA (915bp) protein (305aa)
tyrosine recombinase XerD subunit
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=107 to=302 evalue=6.0e-55 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=112 to=298 evalue=4.2e-54 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
(db=HMMPfam db_id=PF00589 from=112 to=291 evalue=4.0e-47 interpro_id=IPR002104 interpro_description=Integrase, catalytic GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
MEL_B2_4_35
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

35913..36956
DNA (1044bp) protein (348aa)
ribokinase
seg (db=Seg db_id=seg from=54 to=68)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=339 evalue=1.4e-61)
no description (db=Gene3D db_id=G3DSA:3.40.1190.20 from=1 to=344 evalue=2.4e-52)
MEL_B2_4_36
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

37060..37605
DNA (546bp) protein (182aa)
37060..37605 + ( gc_cont=0.310)
Uncharacterized protein {ECO:0000313|EMBL:CDC21169.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_37
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(37624..38598)
DNA (975bp) protein (325aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF03968 from=8 to=86 evalue=4.2e-07 interpro_id=IPR005653 interpro_description=Organic solvent tolerance-like, N-terminal)
Uncharacterized protein {ECO:0000313|EMBL:CDC21170.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_38
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(38585..39166)
DNA (582bp) protein (194aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF06835 from=30 to=155 evalue=9.9e-08 interpro_id=IPR010664 interpro_description=Lipopolysccharide assembly, LptC-related)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=7.0)
Uncharacterized protein {ECO:0000313|EMBL:CDC21172.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_39
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

39320..40915
DNA (1596bp) protein (532aa)
seg (db=Seg db_id=seg from=370 to=389)
seg (db=Seg db_id=seg from=233 to=248)
coiled-coil (db=Coil db_id=coil from=510 to=531 evalue=NA)
coiled-coil (db=Coil db_id=coil from=111 to=139 evalue=NA)
MEL_B2_4_40
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

40921..41337
DNA (417bp) protein (139aa)
40921..41337 + ( gc_cont=0.341)
Uncharacterized protein {ECO:0000313|EMBL:CDC21175.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_41
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(41354..42406)
DNA (1053bp) protein (351aa)
tRNA-specific 2-thiouridylase mnmA
trmU: tRNA (5-methylaminomethyl-2-thiouridyl (db=HMMTigr db_id=TIGR00420 from=5 to=349 evalue=1.8e-107 interpro_id=IPR004506 interpro_description=tRNA-specific 2-thiouridylase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033), Molecular Function: transferase activity (GO:0016740))
(db=HMMPfam db_id=PF03054 from=6 to=349 evalue=2.6e-107 interpro_id=IPR004506 interpro_description=tRNA-specific 2-thiouridylase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033), Molecular Function: transferase activity (GO:0016740))
TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE (db=HMMPanther db_id=PTHR11933 from=20 to=349 evalue=6.2e-99 interpro_id=IPR004506 interpro_description=tRNA-specific 2-thiouridylase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033), Molecular Function: transferase activity (GO:0016740))
MEL_B2_4_42
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(42396..43043)
DNA (648bp) protein (216aa)
PH_DOMAIN (db=ProfileScan db_id=PS50003 from=1 to=41 evalue=6.764 interpro_id=IPR001849 interpro_description=Pleckstrin homology domain GO=Molecular Function: protein binding (GO:0005515))
Uncharacterized protein {ECO:0000313|EMBL:CDC21178.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_43
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(43046..44497)
DNA (1452bp) protein (484aa)
Probable glycine dehydrogenase [decarboxylating] subunit 2 n=1 Tax=Thermoanaerobacterium xylanolyticum LX-11 RepID=F6BJP9_THEXL (db=UNIREF evalue=0.0 bit_score=589.0 identity=60.5 coverage=96.900826446281)
glycine dehydrogenase subunit 2
glycine dehydrogenase subunit 2
seg (db=Seg db_id=seg from=278 to=290)
MEL_B2_4_44
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

44591..45850
DNA (1260bp) protein (420aa)
sugar ABC transporter periplasmic sugar-binding protein
seg (db=Seg db_id=seg from=4 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=13 to=418 evalue=5.2e-59)
MEL_B2_4_45
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

45850..46503
DNA (654bp) protein (218aa)
zinc carboxypeptidase
Zn-dependent exopeptidases (db=superfamily db_id=SSF53187 from=3 to=215 evalue=2.6e-28)
(db=HMMPfam db_id=PF00246 from=12 to=151 evalue=5.4e-21 interpro_id=IPR000834 interpro_description=Peptidase M14, carboxypeptidase A GO=Molecular Function: metallocarboxypeptidase activity (GO:0004181), Biological Process: proteolysis (GO:0006508), Molecular Function: zinc ion binding (GO:0008270))
no description (db=Gene3D db_id=G3DSA:3.40.630.10 from=12 to=193 evalue=2.3e-16)
MEL_B2_4_46
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(46500..48089)
DNA (1590bp) protein (530aa)
1,4-alpha-glucan branching enzyme
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=9 to=20)
seg (db=Seg db_id=seg from=387 to=395)
MEL_B2_4_47
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

48214..48585
DNA (372bp) protein (124aa)
30S ribosomal protein S30
seg (db=Seg db_id=seg from=112 to=123)
Ribosome binding protein Y (YfiA homologue) (db=superfamily db_id=SSF69754 from=2 to=118 evalue=1.1e-27 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
(db=HMMPfam db_id=PF02482 from=3 to=97 evalue=1.3e-25 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
MEL_B2_4_48
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(48638..50266)
DNA (1629bp) protein (543aa)
ABC transporter related protein n=1 Tax=Thermobacillus composti KWC4 RepID=G4EAH0_9BACL (db=UNIREF evalue=0.0 bit_score=721.0 identity=64.1 coverage=98.52670349907919)
ABC transporter-like protein
ABC transporter-like protein
seg (db=Seg db_id=seg from=248 to=264)
MEL_B2_4_49
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(50357..52345)
DNA (1989bp) protein (663aa)
Transketolase n=2 Tax=Megamonas RepID=D4KE37_9FIRM (db=UNIREF evalue=0.0 bit_score=957.0 identity=69.2 coverage=99.5475113122172)
transketolase (EC:2.2.1.1)
transketolase (EC:2.2.1.1)
seg (db=Seg db_id=seg from=297 to=309)
MEL_B2_4_50
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(52447..53061)
DNA (615bp) protein (205aa)
hypothetical protein
metW: methionine biosynthesis protein MetW (db=HMMTigr db_id=TIGR02081 from=13 to=203 evalue=3.6e-91 interpro_id=IPR010743 interpro_description=Methionine biosynthesis MetW)
(db=HMMPfam db_id=PF07021 from=11 to=202 evalue=1.1e-78 interpro_id=IPR010743 interpro_description=Methionine biosynthesis MetW)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=21 to=176 evalue=1.3e-25)
MEL_B2_4_51
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(53054..54232)
DNA (1179bp) protein (393aa)
Homoserine O-acetyltransferase n=2 Tax=Spirochaeta thermophila RepID=E0RRU7_SPITD (db=UNIREF evalue=0.0 bit_score=486.0 identity=62.1 coverage=92.1119592875318)
homoserine O-acetyltransferase (EC:2.3.1.31)
homoserine O-acetyltransferase (EC:2.3.1.31)
homoserO_Ac_trn: homoserine O-acetylt (db=HMMTigr db_id=TIGR01392 from=33 to=386 evalue=2.0e-211 interpro_id=IPR008220 interpro_description=Homoserine acetyltransferase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: O-acetyltransferase activity (GO:0016413))
MEL_B2_4_52
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

54367..54675
DNA (309bp) protein (103aa)
54367..54675 + ( gc_cont=0.362)
Uncharacterized protein {ECO:0000313|EMBL:CDC21591.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_53
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(54723..55688)
DNA (966bp) protein (322aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
seg (db=Seg db_id=seg from=117 to=129)
seg (db=Seg db_id=seg from=86 to=105)
seg (db=Seg db_id=seg from=67 to=78)
MEL_B2_4_54
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(55741..56028)
DNA (288bp) protein (96aa)
55741..56028 - ( gc_cont=0.417)
Uncharacterized protein {ECO:0000313|EMBL:CDC21589.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_55
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(56053..57390)
DNA (1338bp) protein (446aa)
BchE/P-methylase family protein n=5 Tax=Fusobacterium RepID=D4CTK4_9FUSO (db=UNIREF evalue=0.0 bit_score=306.0 identity=38.8 coverage=90.80717488789237)
radical SAM protein
radical SAM protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=150 to=364 evalue=1.2e-28)
MEL_B2_4_56
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

57546..58316
DNA (771bp) protein (257aa)
putative phage minor tail protein
seg (db=Seg db_id=seg from=198 to=221)
seg (db=Seg db_id=seg from=97 to=110)
seg (db=Seg db_id=seg from=223 to=255)
MEL_B2_4_57
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

58354..59832
DNA (1479bp) protein (493aa)
58354..59832 + ( gc_cont=0.411)
Uncharacterized protein {ECO:0000313|EMBL:CDC21586.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_58
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(59837..60544)
DNA (708bp) protein (236aa)
lepB; signal peptidase I (EC:3.4.21.89)
seg (db=Seg db_id=seg from=41 to=55)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=56)
SPASE_I_3 (db=PatternScan db_id=PS00761 from=185 to=198 evalue=0.0 interpro_id=IPR019758 interpro_description=Peptidase S26A, signal peptidase I, conserved site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
MEL_B2_4_59
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(60531..61472)
DNA (942bp) protein (314aa)
trans-hexaprenyltrans transferase (EC:2.5.1.-)
POLYPRENYL_SYNTHASE_1 (db=PatternScan db_id=PS00723 from=89 to=103 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
Terpenoid synthases (db=superfamily db_id=SSF48576 from=7 to=312 evalue=4.0e-58 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
no description (db=Gene3D db_id=G3DSA:1.10.600.10 from=34 to=313 evalue=7.4e-53 interpro_id=IPR008949 interpro_description=Terpenoid synthase)
MEL_B2_4_60
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(61557..62291)
DNA (735bp) protein (245aa)
hypothetical protein
seg (db=Seg db_id=seg from=113 to=126)
seg (db=Seg db_id=seg from=154 to=165)
(db=HMMPfam db_id=PF01832 from=124 to=202 evalue=3.3e-12 interpro_id=IPR002901 interpro_description=Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase GO=Molecular Function: amidase activity (GO:0004040), Biological Process: peptidoglycan catabolic process (GO:0009253))
Displaying items 31-60 of 143 in total

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