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MEL_B2_4

Search features with annotation key words

Displaying items 121-143 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_4_121
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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135050..136210
DNA (1161bp) protein (387aa)
glutamate 5-kinase (EC:2.7.2.11)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Brachyspira pilosicoli 95/1000 RepID=D8IFF6_BRAP9 (db=UNIREF evalue=0.0 bit_score=467.0 identity=62.6 coverage=96.89922480620154)
Glutamate 5-kinase (db=HMMPIR db_id=PIRSF000729 from=6 to=386 evalue=1.1e-133 interpro_id=IPR011529 interpro_description=Glutamate 5-kinase GO=Molecular Function: glutamate 5-kinase activity (GO:0004349), Cellular Component: cytoplasm (GO:0005737), Biological Process: proline biosynthetic process (GO:0006561))
MEL_B2_4_122
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

136228..137532
DNA (1305bp) protein (435aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Brachyspira pilosicoli 95/1000 RepID=D8I9X4_BRAP9 (db=UNIREF evalue=0.0 bit_score=493.0 identity=55.6 coverage=97.70114942528735)
coiled-coil (db=Coil db_id=coil from=36 to=67 evalue=NA)
MEL_B2_4_123
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

137532..138629
DNA (1098bp) protein (366aa)
Oxygen-independent coproporphyrinogen III oxidase n=4 Tax=Fusobacterium RepID=C3WII8_9FUSO (db=UNIREF evalue=0.0 bit_score=308.0 identity=44.4 coverage=98.36065573770492)
hypothetical protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=4 to=363 evalue=3.5e-114)
hemN_rel: putative oxygen-independent coprop (db=HMMTigr db_id=TIGR00539 from=3 to=354 evalue=1.3e-89 interpro_id=IPR004559 interpro_description=Coproporphyrinogen III oxidase, oxygen-independent related GO=Molecular Function: coproporphyrinogen oxidase activity (GO:0004109), Cellular Component: cytoplasm (GO:0005737), Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779), Biological Process: oxidation-reduction process (GO:0055114))
MEL_B2_4_124
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

138747..138941
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=8 to=30)
Uncharacterized protein {ECO:0000313|EMBL:CDC21343.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_125
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(138955..139659)
DNA (705bp) protein (235aa)
seg (db=Seg db_id=seg from=38 to=43)
Uncharacterized protein {ECO:0000313|EMBL:CDC21342.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_126
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

139791..140000
DNA (210bp) protein (70aa)
hypothetical protein
(db=HMMPfam db_id=PF01809 from=3 to=68 evalue=8.9e-31 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=6 to=69 evalue=1.7e-23 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
Y1913_GLOVI_Q7NJB9; (db=BlastProDom db_id=PD004225 from=16 to=68 evalue=1.0e-17 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
MEL_B2_4_127
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

140162..141748
DNA (1587bp) protein (529aa)
glycosyl transferase family protein
seg (db=Seg db_id=seg from=433 to=441)
seg (db=Seg db_id=seg from=327 to=340)
seg (db=Seg db_id=seg from=1 to=23)
MEL_B2_4_128
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

141749..142870
DNA (1122bp) protein (374aa)
DNA processing protein DprA
dprA: DNA protecting protein DprA (db=HMMTigr db_id=TIGR00732 from=73 to=293 evalue=1.8e-88 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
(db=HMMPfam db_id=PF02481 from=76 to=284 evalue=1.7e-74 interpro_id=IPR003488 interpro_description=DNA recombination-mediator protein A GO=Biological Process: DNA mediated transformation (GO:0009294))
MoCo carrier protein-like (db=superfamily db_id=SSF102405 from=84 to=293 evalue=1.3e-34)
MEL_B2_4_129
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

142941..144317
DNA (1377bp) protein (459aa)
Signal recognition particle protein n=10 Tax=Thermoanaerobacter RepID=C7IPC9_THEET (db=UNIREF evalue=0.0 bit_score=478.0 identity=54.3 coverage=95.86056644880175)
signal recognition particle protein
signal recognition particle protein
seg (db=Seg db_id=seg from=435 to=455)
MEL_B2_4_130
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(144314..145195)
DNA (882bp) protein (294aa)
seg (db=Seg db_id=seg from=226 to=237)
Uncharacterized protein {ECO:0000313|EMBL:CDC21327.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_131
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


145559..148231
DNA (2673bp) protein (891aa)
Alanyl-tRNA synthetase n=1 Tax=Desulfurobacterium thermolithotrophum DSM 11699 RepID=F0S285_DESTD (db=UNIREF evalue=0.0 bit_score=796.0 identity=45.1 coverage=97.97979797979798)
alanyl-tRNA synthetase
alanyl-tRNA synthetase
coiled-coil (db=Coil db_id=coil from=351 to=372 evalue=NA)
MEL_B2_4_132
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists

148316..148999
DNA (684bp) protein (228aa)
seg (db=Seg db_id=seg from=87 to=98)
Uncharacterized protein {ECO:0000313|EMBL:CDF00283.1}; TaxID=1262843 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_133
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

149108..149410
DNA (303bp) protein (101aa)
149108..149410 + ( gc_cont=0.353)
Uncharacterized protein {ECO:0000313|EMBL:CDC21324.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_134
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

149403..150233
DNA (831bp) protein (277aa)
tetrapyrrole methylase
Ribosomal RNA small subunit methyltransferase I n=3 Tax=Parvimonas RepID=A8SMD5_9FIRM (db=UNIREF evalue=0.0 bit_score=220.0 identity=43.7 coverage=96.38989169675091)
seg (db=Seg db_id=seg from=231 to=244)
coiled-coil (db=Coil db_id=coil from=162 to=183 evalue=NA)
MEL_B2_4_135
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

150357..150545
DNA (189bp) protein (63aa)
(db=HMMPfam db_id=PF01402 from=4 to=41 evalue=2.5e-07 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Ribbon-helix-helix (db=superfamily db_id=SSF47598 from=1 to=47 evalue=8.1e-07 interpro_id=IPR010985 interpro_description=Ribbon-helix-helix GO=Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Putative transcriptional regulator CopG family {ECO:0000313|EMBL:CDC21320.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples
MEL_B2_4_136
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

150574..151296
DNA (723bp) protein (241aa)
acylneuraminate cytidylyltransferase
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=232 evalue=2.0e-53)
CMP-N-ACETYLNEURAMINIC ACID SYNTHASE (db=HMMPanther db_id=PTHR21485:SF3 from=8 to=234 evalue=4.0e-53)
CMP-N-ACETYLNEURAMINIC ACID SYNTHASE (db=HMMPanther db_id=PTHR21485 from=8 to=234 evalue=4.0e-53)
MEL_B2_4_137
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

151289..151864
DNA (576bp) protein (192aa)
(db=HMMPfam db_id=PF05258 from=14 to=94 evalue=2.5e-10 interpro_id=IPR007922 interpro_description=Protein of unknown function DUF721/UPF0232)
Uncharacterized protein {ECO:0000313|EMBL:CDC21315.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_138
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(151853..152509)
DNA (657bp) protein (219aa)
Substrate-specific component BioY of biotin ECF transporter
BioY family protein n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QI95_9FIRM (db=UNIREF evalue=2.0e-14 bit_score=85.0 identity=34.7 coverage=52.054794520547944)
transmembrane_regions (db=TMHMM db_id=tmhmm from=183 to=205)
coiled-coil (db=Coil db_id=coil from=3 to=24 evalue=NA)
MEL_B2_4_139
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(152506..153012)
DNA (507bp) protein (169aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
seg (db=Seg db_id=seg from=35 to=46)
rimI: ribosomal-protein-alanine acetyltransf (db=HMMTigr db_id=TIGR01575 from=12 to=144 evalue=9.6e-47 interpro_id=IPR006464 interpro_description=Ribosomal-protein-alanine acetyltransferase GO=Biological Process: N-terminal protein amino acid acetylation (GO:0006474), Molecular Function: acetyltransferase activity (GO:0016407))
RIBOSOMAL-PROTEIN-ALANINE ACETYLTRANSFERASE (db=HMMPanther db_id=PTHR23091:SF1 from=8 to=144 evalue=3.5e-41)
MEL_B2_4_140
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

153127..155190
DNA (2064bp) protein (688aa)
UPI00020A9D29 related cluster n=1 Tax=unknown RepID=UPI00020A9D29 (db=UNIREF evalue=0.0 bit_score=465.0 identity=41.7 coverage=82.99418604651163)
penicillin-binding protein
penicillin-binding protein
seg (db=Seg db_id=seg from=668 to=685)
MEL_B2_4_141
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

155223..155624
DNA (402bp) protein (134aa)
Nucleotidyltransferase substrate binding subunit/domain (db=superfamily db_id=SSF81593 from=7 to=127 evalue=1.6e-09)
(db=HMMPfam db_id=PF08780 from=6 to=126 evalue=4.6e-08 interpro_id=IPR010235 interpro_description=Nucleotidyltransferase substrate binding protein, HI0074)
no description (db=Gene3D db_id=G3DSA:1.20.120.330 from=5 to=131 evalue=4.8e-05)
Nucleotidyltransferase substrate binding protein HI0074 family {ECO:0000313|EMBL:CDC21305.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; envir
MEL_B2_4_142
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

155638..156393
DNA (756bp) protein (252aa)
seg (db=Seg db_id=seg from=167 to=190)
no description (db=Gene3D db_id=G3DSA:3.30.460.10 from=146 to=250 evalue=5.0e-06)
Uncharacterized protein {ECO:0000313|EMBL:CDC21303.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_143
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(156405..158900)
DNA (2496bp) protein (832aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N241_SLAHD (db=UNIREF evalue=2.2e-34 bit_score=153.0 identity=48.9 coverage=15.144230769230768)
seg (db=Seg db_id=seg from=754 to=767)
seg (db=Seg db_id=seg from=710 to=727)
Displaying items 121-143 of 143 in total

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