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MEL_B2_4

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_4_1
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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3..2750
DNA (2748bp) protein (916aa)
DNA topoisomerase IV subunit A
seg (db=Seg db_id=seg from=188 to=209)
seg (db=Seg db_id=seg from=876 to=914)
seg (db=Seg db_id=seg from=850 to=868)
MEL_B2_4_2
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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2792..4240
DNA (1449bp) protein (483aa)
glycosyl transferase 8
Glycosyl transferase GT8 family n=1 Tax=Butyrivibrio proteoclasticus B316 RepID=E0RZZ2_BUTPB (db=UNIREF evalue=1.1e-28 bit_score=134.0 identity=29.4 coverage=62.11180124223602)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=9 to=287 evalue=4.5e-50)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=9 to=275 evalue=6.3e-48)
MEL_B2_4_3
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

4237..5205
DNA (969bp) protein (323aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0R2H1_BRAHW (db=UNIREF evalue=0.0 bit_score=330.0 identity=51.4 coverage=95.97523219814241)
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase
seg (db=Seg db_id=seg from=64 to=77)
MEL_B2_4_4
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

5343..6932
DNA (1590bp) protein (530aa)
recombination factor protein RarA
recombination factor protein RarA
Ycf45 protein n=1 Tax=Gloeobacter violaceus PCC 7421 RepID=Q7NEW0_GLOVI (db=UNIREF evalue=0.0 bit_score=473.0 identity=48.0 coverage=96.0377358490566)
coiled-coil (db=Coil db_id=coil from=457 to=478 evalue=NA)
MEL_B2_4_5
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(6929..7159)
DNA (231bp) protein (77aa)
XRE family transcriptional regulator n=1 Tax=Aggregatibacter actinomycetemcomitans serotype f str. D18P1 RepID=G4AK69_AGGAC (db=UNIREF evalue=1.4e-07 bit_score=61.0 identity=48.6 coverage=92.20779220779221)
seg (db=Seg db_id=seg from=57 to=71)
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=13 to=74 evalue=1.1e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=7 to=76 evalue=1.6e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_4_6
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

7216..7389
DNA (174bp) protein (58aa)
seg (db=Seg db_id=seg from=2 to=17)
seg (db=Seg db_id=seg from=24 to=44)
Uncharacterized protein {ECO:0000313|EMBL:CDC19434.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_7
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(7438..7947)
DNA (510bp) protein (170aa)
Ferritin-like protein
FERRITIN (db=HMMPanther db_id=PTHR11431 from=1 to=161 evalue=8.7e-78 interpro_id=IPR001519 interpro_description=Ferritin GO=Biological Process: iron ion transport (GO:0006826), Biological Process: cellular iron ion homeostasis (GO:0006879), Molecular Function: ferric iron binding (GO:0008199))
FERRITIN (db=HMMPanther db_id=PTHR11431:SF4 from=1 to=161 evalue=8.7e-78)
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=1 to=159 evalue=2.2e-56 interpro_id=IPR012347 interpro_description=Ferritin-related)
MEL_B2_4_8
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(7973..8380)
DNA (408bp) protein (136aa)
dfx; desulfoferrodoxin
Desulfoferrodoxin homolog n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=DFX_ARCFU (db=UNIREF evalue=1.1e-31 bit_score=142.0 identity=51.9 coverage=91.17647058823529)
dfx_rbo: desulfoferrodoxin (db=HMMTigr db_id=TIGR00320 from=1 to=129 evalue=4.0e-43 interpro_id=IPR004793 interpro_description=Desulfoferrodoxin GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: removal of superoxide radicals (GO:0019430))
no description (db=Gene3D db_id=G3DSA:2.60.40.730 from=2 to=130 evalue=9.2e-37)
MEL_B2_4_9
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

8492..9046
DNA (555bp) protein (185aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:CDC19669.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_10
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(9054..9983)
DNA (930bp) protein (310aa)
4-hydroxythreonine-4-phosphate dehydrogenase
seg (db=Seg db_id=seg from=193 to=204)
seg (db=Seg db_id=seg from=158 to=166)
pdxA: 4-hydroxythreonine-4-phosphate dehydro (db=HMMTigr db_id=TIGR00557 from=4 to=309 evalue=1.6e-111 interpro_id=IPR005255 interpro_description=Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA GO=Biological Process: pyridoxine biosynthetic process (GO:0008615), Molecular Function: 4-hydroxythreonine-4-phosphate dehydrogenase activity (GO:0050570), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
MEL_B2_4_11
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(9976..11280)
DNA (1305bp) protein (435aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACP2_CARHZ (db=UNIREF evalue=0.0 bit_score=208.0 identity=29.5 coverage=97.47126436781609)
hypothetical protein
seg (db=Seg db_id=seg from=161 to=170)
seg (db=Seg db_id=seg from=7 to=22)
MEL_B2_4_12
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(11326..11661)
DNA (336bp) protein (112aa)
ssb; single-stranded DNA-binding protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=111 evalue=2.2e-30 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
(db=HMMPfam db_id=PF00436 from=2 to=101 evalue=1.3e-28 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=3 to=110 evalue=2.6e-27 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
MEL_B2_4_13
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

11801..12379
DNA (579bp) protein (193aa)
11801..12379 + ( gc_cont=0.330)
Uncharacterized protein {ECO:0000313|EMBL:CDC19678.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_14
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(12376..13923)
DNA (1548bp) protein (516aa)
proP; Permease of the major facilitator superfamily
transmembrane_regions (db=TMHMM db_id=tmhmm from=140 to=162)
transmembrane_regions (db=TMHMM db_id=tmhmm from=234 to=256)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
MEL_B2_4_15
Acinetobacter sp. CAG:196, Melainabacteria, Bacteria

Not on your lists

comp(13936..14418)
DNA (483bp) protein (161aa)
Transcriptional regulator n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XY50_9FIRM (db=UNIREF evalue=4.3e-11 bit_score=74.0 identity=27.6 coverage=88.81987577639751)
MarR family transcriptional regulator
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=154 evalue=4.4e-25)
(db=HMMPfam db_id=PF01047 from=44 to=102 evalue=1.8e-11 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
MEL_B2_4_16
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

14520..14840
DNA (321bp) protein (107aa)
coiled-coil (db=Coil db_id=coil from=75 to=96 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC17927.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_17
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

14863..15996
DNA (1134bp) protein (378aa)
hypothetical protein
seg (db=Seg db_id=seg from=296 to=309)
transmembrane_regions (db=TMHMM db_id=tmhmm from=348 to=370)
transmembrane_regions (db=TMHMM db_id=tmhmm from=321 to=338)
MEL_B2_4_18
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(15989..16882)
DNA (894bp) protein (298aa)
peptidase U61, LD-carboxypeptidase A
(db=HMMPfam db_id=PF02016 from=15 to=288 evalue=7.0e-77 interpro_id=IPR003507 interpro_description=Peptidase S66, LD-carboxypeptidase A)
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=1 to=169 evalue=4.0e-47)
LD-carboxypeptidase A C-terminal domain-like (db=superfamily db_id=SSF141986 from=142 to=294 evalue=1.2e-28)
MEL_B2_4_19
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

16945..18873
DNA (1929bp) protein (643aa)
DNA polymerase III, subunits gamma and tau n=1 Tax=Acetohalobium arabaticum DSM 5501 RepID=D9QSP4_ACEAZ (db=UNIREF evalue=0.0 bit_score=389.0 identity=37.0 coverage=88.33592534992223)
DNA polymerase III subunits gamma/tau (EC:2.7.7.7)
DNA polymerase III subunits gamma/tau (EC:2.7.7.7)
seg (db=Seg db_id=seg from=573 to=594)
MEL_B2_4_20
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(18920..20176)
DNA (1257bp) protein (419aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Thermobacillus composti KWC4 RepID=G4EJJ9_9BACL (db=UNIREF evalue=0.0 bit_score=473.0 identity=54.8 coverage=97.85202863961814)
beta-ketoacyl-acyl-carrier-protein synthase II
beta-ketoacyl-acyl-carrier-protein synthase II
seg (db=Seg db_id=seg from=278 to=285)
MEL_B2_4_21
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(20299..20532)
DNA (234bp) protein (78aa)
Acyl carrier protein (ACP)
Acyl carrier protein 1 n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SJ28_RHOPH (db=UNIREF evalue=1.1e-23 bit_score=114.0 identity=74.0 coverage=97.43589743589743)
PHOSPHOPANTETHEINE (db=PatternScan db_id=PS00012 from=32 to=47 evalue=0.0 interpro_id=IPR006162 interpro_description=Phosphopantetheine attachment site GO=Molecular Function: phosphopantetheine binding (GO:0031177))
acyl_carrier: acyl carrier protein (db=HMMTigr db_id=TIGR00517 from=1 to=77 evalue=2.3e-36 interpro_id=IPR003231 interpro_description=Acyl carrier protein (ACP) GO=Biological Process: fatty acid biosynthetic process (GO:0006633))
MEL_B2_4_22
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

comp(20657..21385)
DNA (729bp) protein (243aa)
fabG1; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
ADH_SHORT (db=PatternScan db_id=PS00061 from=141 to=169 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrie (db=HMMTigr db_id=TIGR01830 from=7 to=241 evalue=3.2e-137 interpro_id=IPR011284 interpro_description=3-oxoacyl-(acyl-carrier-protein) reductase GO=Molecular Function: 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity (GO:0004316), Biological Process: fatty acid biosynthetic process (GO:0006633), Molecular Function: NAD binding (GO:0051287), Biological Process: oxidation-reduction process (GO:0055114))
3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE (db=HMMPanther db_id=PTHR19410:SF87 from=3 to=238 evalue=5.3e-133)
MEL_B2_4_23
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(21440..22372)
DNA (933bp) protein (311aa)
malonyl CoA:acyl carrier protein transacylase
malonyl CoA:acyl carrier protein transacylase
Malonyl CoA-acyl carrier protein transacylase n=6 Tax=Bacillus subtilis group RepID=FABD_BACSU (db=UNIREF evalue=0.0 bit_score=300.0 identity=49.2 coverage=99.35691318327974)
fabD: malonyl CoA-acyl carrier protein trans (db=HMMTigr db_id=TIGR00128 from=2 to=290 evalue=1.3e-138 interpro_id=IPR004410 interpro_description=Malonyl CoA-acyl carrier protein transacylase, FabD-type GO=Molecular Function: [acyl-carrier-protein] S-malonyltransferase activity (GO:0004314))
MEL_B2_4_24
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(22391..23398)
DNA (1008bp) protein (336aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWW3_HALOH (db=UNIREF evalue=0.0 bit_score=316.0 identity=48.9 coverage=95.83333333333334)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
seg (db=Seg db_id=seg from=101 to=116)
MEL_B2_4_25
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(23404..24456)
DNA (1053bp) protein (351aa)
Phosphate acyltransferase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=PLSX_DICTD (db=UNIREF evalue=0.0 bit_score=323.0 identity=49.3 coverage=92.3076923076923)
fatty acid/phospholipid synthesis protein PlsX
fatty acid/phospholipid synthesis protein PlsX
seg (db=Seg db_id=seg from=238 to=252)
MEL_B2_4_26
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(24551..24919)
DNA (369bp) protein (123aa)
rpmF; 50S ribosomal protein L32
seg (db=Seg db_id=seg from=62 to=112)
coiled-coil (db=Coil db_id=coil from=81 to=102 evalue=NA)
(db=HMMPfam db_id=PF01783 from=2 to=54 evalue=4.5e-20 interpro_id=IPR002677 interpro_description=Ribosomal protein L32p GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
MEL_B2_4_27
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(24922..25437)
DNA (516bp) protein (172aa)
seg (db=Seg db_id=seg from=65 to=76)
(db=HMMPfam db_id=PF02620 from=48 to=163 evalue=2.3e-15 interpro_id=IPR003772 interpro_description=Protein of unknown function DUF177)
Uncharacterized protein {ECO:0000313|EMBL:CDC17938.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein
MEL_B2_4_28
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(25533..30821)
DNA (5289bp) protein (1763aa)
seg (db=Seg db_id=seg from=857 to=870)
seg (db=Seg db_id=seg from=1432 to=1440)
seg (db=Seg db_id=seg from=115 to=126)
seg (db=Seg db_id=seg from=815 to=831)
MEL_B2_4_29
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(30984..31712)
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=32 to=40)
Uncharacterized protein {ECO:0000313|EMBL:CDC17940.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_30
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(31734..32300)
DNA (567bp) protein (189aa)
Chromate transport protein n=2 Tax=Turicibacter RepID=D4W6B9_9FIRM (db=UNIREF evalue=5.4e-37 bit_score=160.0 identity=43.5 coverage=96.82539682539682)
chromate transporter
seg (db=Seg db_id=seg from=98 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=166)
Displaying items 1-30 of 143 in total

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