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MEL_B2_4

Search features with annotation key words

Displaying items 61-90 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_4_61
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(62358..62831)
DNA (474bp) protein (158aa)
62358..62831 - ( gc_cont=0.327)
Uncharacterized protein {ECO:0000313|EMBL:CDC21576.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_62
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(62895..64655)
DNA (1761bp) protein (587aa)
seg (db=Seg db_id=seg from=258 to=269)
seg (db=Seg db_id=seg from=50 to=62)
Uncharacterized protein {ECO:0000313|EMBL:CDC21574.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_63
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(64671..65345)
DNA (675bp) protein (225aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC21572.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
hypothetical protein alias=MEL_C2_C00001G00550 id=470652 tax=MEL_C2 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae
MEL_B2_4_64
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(65349..66194)
DNA (846bp) protein (282aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
MEL_B2_4_65
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

66363..67001
DNA (639bp) protein (213aa)
seg (db=Seg db_id=seg from=123 to=141)
Uncharacterized protein {ECO:0000313|EMBL:CDC21566.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_66
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

67400..68047
DNA (648bp) protein (216aa)
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LCC2_9FIRM (db=UNIREF evalue=2.8e-37 bit_score=161.0 identity=46.2 coverage=83.33333333333334)
DNA polymerase III PolC-type (PolIII) (EC:2.7.7.7)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=34 to=198 evalue=8.8e-49 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=30 to=198 evalue=7.5e-39)
MEL_B2_4_67
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(68048..69694)
DNA (1647bp) protein (549aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
CoA-disulfide reductase n=1 Tax=Thermoanaerobacterium xylanolyticum LX-11 RepID=F6BFY0_THEXL (db=UNIREF evalue=0.0 bit_score=525.0 identity=49.1 coverage=96.35701275045537)
seg (db=Seg db_id=seg from=3 to=22)
MEL_B2_4_68
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

69796..71097
DNA (1302bp) protein (434aa)
UDP-glucose 6-dehydrogenase n=3 Tax=Brachyspira RepID=C0QYB3_BRAHW (db=UNIREF evalue=0.0 bit_score=574.0 identity=65.0 coverage=99.07834101382488)
ugd; UDP-glucose 6-dehydrogenase
ugd; UDP-glucose 6-dehydrogenase
seg (db=Seg db_id=seg from=30 to=41)
MEL_B2_4_69
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

71097..72026
DNA (930bp) protein (310aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Eubacterium cellulosolvens 6 RepID=E4MK23_9FIRM (db=UNIREF evalue=0.0 bit_score=453.0 identity=70.5 coverage=99.03225806451613)
NAD-dependent dehydratase
NAD-dependent dehydratase
MEL_B2_4_70
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(72013..72543)
DNA (531bp) protein (177aa)
GNAT family acetyltransferase
seg (db=Seg db_id=seg from=3 to=14)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=172 evalue=3.5e-39 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=1 to=173 evalue=9.4e-26 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
MEL_B2_4_71
unknown

Not on your lists

comp(72964..73431)
DNA (468bp) protein (156aa)
72964..73431 - ( gc_cont=0.327)
MEL_B2_4_72
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(73533..75317)
DNA (1785bp) protein (595aa)
thiamine pyrophosphate TPP binding domain-containing protein
thiamine pyrophosphate TPP binding domain-containing protein
Acetolactate synthase n=1 Tax=Clostridium lentocellum DSM 5427 RepID=F2JLP1_CELLD (db=UNIREF evalue=0.0 bit_score=615.0 identity=51.7 coverage=99.15966386554622)
THIAMINE PYROPHOSPHATE ENZYMES (db=HMMPanther db_id=PTHR18968 from=241 to=554 evalue=2.8e-67)
MEL_B2_4_73
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(75343..76161)
DNA (819bp) protein (273aa)
Putative uncharacterized protein n=1 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1MUL5_9PLAN (db=UNIREF evalue=0.0 bit_score=302.0 identity=54.5 coverage=94.87179487179486)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
coiled-coil (db=Coil db_id=coil from=246 to=267 evalue=NA)
Phosphoenolpyruvate/pyruvate domain (db=superfamily db_id=SSF51621 from=35 to=181 evalue=2.7e-10 interpro_id=IPR015813 interpro_description=Pyruvate/Phosphoenolpyruvate kinase GO=Molecular Function: catalytic activity (GO:0003824))
MEL_B2_4_74
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(76253..77620)
DNA (1368bp) protein (456aa)
Glutamine synthetase n=1 Tax=Clostridium clariflavum DSM 19732 RepID=G8M365_CLOCD (db=UNIREF evalue=0.0 bit_score=571.0 identity=61.5 coverage=96.27192982456141)
glutamine synthetase, type I
glutamine synthetase, type I
seg (db=Seg db_id=seg from=10 to=23)
MEL_B2_4_75
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(77861..79234)
DNA (1374bp) protein (458aa)
Putative uncharacterized protein n=1 Tax=Candidatus Nanosalinarum sp. J07AB56 RepID=G0QAG0_9EURY (db=UNIREF evalue=0.0 bit_score=489.0 identity=52.3 coverage=97.16157205240175)
conserved hypothetical protein
conserved hypothetical protein
seg (db=Seg db_id=seg from=361 to=373)
MEL_B2_4_76
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(79259..81025)
DNA (1767bp) protein (589aa)
Exonuclease RNase T and DNA polymerase III
seg (db=Seg db_id=seg from=233 to=247)
seg (db=Seg db_id=seg from=216 to=228)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=210 to=550 evalue=1.2e-34 interpro_id=IPR012337 interpro_description=Ribonuclease H-like domain GO=Molecular Function: nucleic acid binding (GO:0003676))
MEL_B2_4_77
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(81025..83019)
DNA (1995bp) protein (665aa)
seg (db=Seg db_id=seg from=29 to=46)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=55 to=291 evalue=2.7e-24)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=404 to=635 evalue=2.1e-13)
no description (db=Gene3D db_id=G3DSA:3.30.870.10 from=102 to=289 evalue=3.4e-07)
MEL_B2_4_78
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

83184..83495
DNA (312bp) protein (104aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
PQ loop repeat protein {ECO:0000313|EMBL:CDC21461.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_79
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

83523..84890
DNA (1368bp) protein (456aa)
Putative deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Clostridium ljungdahlii DSM 13528 RepID=D8GM84_CLOLD (db=UNIREF evalue=0.0 bit_score=341.0 identity=45.1 coverage=86.8421052631579)
deoxyguanosinetriphosphate triphosphohydrolase
deoxyguanosinetriphosphate triphosphohydrolase
seg (db=Seg db_id=seg from=340 to=349)
MEL_B2_4_80
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

84935..86137
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGX8_9CLOT (db=UNIREF evalue=0.0 bit_score=527.0 identity=65.4 coverage=98.50374064837905)
L-threonine ammonia-lyase (EC:4.3.1.19)
L-threonine ammonia-lyase (EC:4.3.1.19)
seg (db=Seg db_id=seg from=270 to=283)
MEL_B2_4_81
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

86141..86515
DNA (375bp) protein (125aa)
Putative endoribonuclease L-PSP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMT0_9FIRM (db=UNIREF evalue=5.7e-35 bit_score=153.0 identity=59.5 coverage=96.0)
hypothetical protein
UPF0076 (db=PatternScan db_id=PS01094 from=100 to=118 evalue=0.0 interpro_id=IPR019897 interpro_description=YjgF-like protein, conserved site)
TIGR00004: putative endoribonuclease L-PSP (db=HMMTigr db_id=TIGR00004 from=2 to=124 evalue=7.6e-75 interpro_id=IPR006056 interpro_description=YjgF-like protein)
MEL_B2_4_82
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(86499..87848)
DNA (1350bp) protein (450aa)
DegT/DnrJ/EryC1/StrS aminotransferase family enzyme n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DVP0_SULAA (db=UNIREF evalue=0.0 bit_score=611.0 identity=63.9 coverage=98.66666666666667)
DegT/DnrJ/EryC1/StrS aminotransferase family enzyme
DegT/DnrJ/EryC1/StrS aminotransferase family enzyme
Predicted pyridoxal dependent aminotransferase, DegT/DnrJ/EryC1/StrS types (db=HMMPIR db_id=PIRSF000390 from=1 to=449 evalue=7.3e-117 interpro_id=IPR000653 interpro_description=DegT/DnrJ/EryC1/StrS aminotransferase)
MEL_B2_4_83
Clostridium sp. CAG:768, Melainabacteria, Bacteria

Not on your lists

comp(87852..88910)
DNA (1059bp) protein (353aa)
CDP-glucose 4,6-dehydratase n=1 Tax=Persephonella marina EX-H1 RepID=C0QSV2_PERMH (db=UNIREF evalue=0.0 bit_score=387.0 identity=52.0 coverage=96.60056657223795)
rfbG; CDP-glucose 4,6-dehydratase (EC:4.2.1.45)
rfbG; CDP-glucose 4,6-dehydratase (EC:4.2.1.45)
CDP_4_6_dhtase: CDP-glucose 4,6-dehydr (db=HMMTigr db_id=TIGR02622 from=4 to=347 evalue=3.2e-195 interpro_id=IPR013445 interpro_description=CDP-glucose 4,6-dehydratase)
MEL_B2_4_84
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(88910..89683)
DNA (774bp) protein (258aa)
Glucose-1-phosphate cytidylyltransferase n=1 Tax=Treponema brennaborense DSM 12168 RepID=F4LIR9_TREBD (db=UNIREF evalue=0.0 bit_score=376.0 identity=64.3 coverage=98.83720930232558)
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33)
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33)
G1P_cyt_trans: glucose-1-phosphate cyti (db=HMMTigr db_id=TIGR02623 from=1 to=257 evalue=2.6e-156 interpro_id=IPR013446 interpro_description=Glucose-1-phosphate cytidylyltransferase GO=Molecular Function: glucose-1-phosphate cytidylyltransferase activity (GO:0047343))
MEL_B2_4_85
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

89850..92363
DNA (2514bp) protein (838aa)
hypothetical protein (db=KEGG evalue=6.4e-37 bit_score=161.0 identity=20.9 coverage=89.97613365155132)
Putative leucine-rich repeat-containing protein DDB_G0290503 n=1 Tax=Dictyostelium discoideum RepID=LRRX1_DICDI (db=UNIREF evalue=8.3e-37 bit_score=161.0 identity=20.9 coverage=89.97613365155132)
seg (db=Seg db_id=seg from=64 to=75)
seg (db=Seg db_id=seg from=554 to=565)
MEL_B2_4_86
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(92427..94457)
DNA (2031bp) protein (677aa)
coiled-coil (db=Coil db_id=coil from=11 to=34 evalue=NA)
coiled-coil (db=Coil db_id=coil from=147 to=168 evalue=NA)
seg (db=Seg db_id=seg from=10 to=52)
seg (db=Seg db_id=seg from=458 to=479)
MEL_B2_4_87
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(94653..97910)
DNA (3258bp) protein (1086aa)
hypothetical protein
seg (db=Seg db_id=seg from=418 to=429)
seg (db=Seg db_id=seg from=13 to=30)
seg (db=Seg db_id=seg from=102 to=115)
MEL_B2_4_88
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(98082..99008)
DNA (927bp) protein (309aa)
98082..99008 - ( gc_cont=0.343)
Uncharacterized protein {ECO:0000313|EMBL:CDC21448.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_89
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

99203..99571
DNA (369bp) protein (123aa)
seg (db=Seg db_id=seg from=39 to=50)
coiled-coil (db=Coil db_id=coil from=62 to=90 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC21447.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_4_90
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(99873..100511)
DNA (639bp) protein (213aa)
seg (db=Seg db_id=seg from=165 to=187)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=67 to=78)
Pili subunits (db=superfamily db_id=SSF54523 from=13 to=140 evalue=5.8e-09)
Displaying items 61-90 of 143 in total

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