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MEL_B2_8

Search features with annotation key words

Displaying items 121-150 of 205 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_8_121
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(125923..127128)
DNA (1206bp) protein (402aa)
phosphoglycerate kinase (EC:2.7.2.3)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=78 Tax=Bacillus RepID=PGK_BACAA (db=UNIREF evalue=0.0 bit_score=432.0 identity=55.3 coverage=97.2636815920398)
PHOSPHOGLYCERATE KINASE (db=HMMPanther db_id=PTHR11406 from=2 to=401 evalue=6.4e-199 interpro_id=IPR001576 interpro_description=Phosphoglycerate kinase GO=Molecular Function: phosphoglycerate kinase activity (GO:0004618), Biological Process: glycolysis (GO:0006096))
MEL_B2_8_122
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

127392..130277
DNA (2886bp) protein (962aa)
seg (db=Seg db_id=seg from=49 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=67)
coiled-coil (db=Coil db_id=coil from=345 to=366 evalue=NA)
coiled-coil (db=Coil db_id=coil from=74 to=127 evalue=NA)
MEL_B2_8_123
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(130355..132937)
DNA (2583bp) protein (861aa)
DNA gyrase subunit A n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A8P8_CARHZ (db=UNIREF evalue=0.0 bit_score=936.0 identity=58.6 coverage=94.19279907084785)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
seg (db=Seg db_id=seg from=363 to=374)
MEL_B2_8_124
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(133006..133269)
DNA (264bp) protein (88aa)
133006..133269 - ( gc_cont=0.367)
Uncharacterized protein {ECO:0000313|EMBL:CDC21845.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_125
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

133381..133764
DNA (384bp) protein (128aa)
putative ribonuclease III
RNase III domain-like (db=superfamily db_id=SSF69065 from=1 to=120 evalue=1.7e-20 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
Predicted inactive ribonuclease III homolog (db=HMMPIR db_id=PIRSF005520 from=1 to=122 evalue=3.1e-14 interpro_id=IPR008226 interpro_description=Uncharacterised conserved protein UCP005520)
no description (db=HMMSmart db_id=SM00535 from=3 to=126 evalue=0.003 interpro_id=IPR000999 interpro_description=Ribonuclease III GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease III activity (GO:0004525), Biological Process: RNA processing (GO:0006396))
MEL_B2_8_126
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(133761..135992)
DNA (2232bp) protein (744aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=215 to=234)
transmembrane_regions (db=TMHMM db_id=tmhmm from=243 to=260)
transmembrane_regions (db=TMHMM db_id=tmhmm from=264 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=296 to=318)
MEL_B2_8_127
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(136051..136446)
DNA (396bp) protein (132aa)
136051..136446 - ( gc_cont=0.331)
Uncharacterized protein {ECO:0000313|EMBL:CDC21842.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_128
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

136679..137959
DNA (1281bp) protein (427aa)
adenylosuccinate synthase
adenylosuccinate synthase
Adenylosuccinate synthetase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=G6I4I8_9FIRM (db=UNIREF evalue=0.0 bit_score=460.0 identity=51.4 coverage=98.59484777517564)
seg (db=Seg db_id=seg from=79 to=91)
MEL_B2_8_129
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(138207..138524)
DNA (318bp) protein (106aa)
XRE family transcriptional regulator
Transcriptional regulator, XRE family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M112_GEOSF (db=UNIREF evalue=1.0e-16 bit_score=92.0 identity=46.1 coverage=95.28301886792453)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=78 evalue=1.7e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=7 to=69 evalue=4.6e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_8_130
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

138781..139179
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XA20_OXAFO (db=UNIREF evalue=0.0 bit_score=231.0 identity=76.9 coverage=96.99248120300751)
hypothetical protein
(db=HMMPfam db_id=PF05523 from=1 to=130 evalue=3.8e-54 interpro_id=IPR008894 interpro_description=WxcM-like, C-terminal)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=3 to=121 evalue=4.9e-15 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
MEL_B2_8_131
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

139176..139622
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=9 Tax=Campylobacter coli RepID=H7SXH8_CAMCO (db=UNIREF evalue=0.0 bit_score=227.0 identity=72.6 coverage=97.31543624161074)
WxcM-like protein
seg (db=Seg db_id=seg from=120 to=133)
HEXAPEP_TRANSFERASES (db=PatternScan db_id=PS00101 from=105 to=133 evalue=0.0 interpro_id=IPR018357 interpro_description=Hexapeptide transferase, conserved site GO=Molecular Function: transferase activity (GO:0016740))
MEL_B2_8_132
Clostridium sp. CAG:967, Melainabacteria, Bacteria

Not on your lists

139615..140748
DNA (1134bp) protein (378aa)
radical SAM domain-containing protein
seg (db=Seg db_id=seg from=62 to=69)
seg (db=Seg db_id=seg from=367 to=377)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=18 to=255 evalue=6.2e-10)
MEL_B2_8_133
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

140749..141660
DNA (912bp) protein (304aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXD9_PAESJ (db=UNIREF evalue=0.0 bit_score=210.0 identity=41.5 coverage=90.13157894736842)
short chain dehydrogenase
seg (db=Seg db_id=seg from=5 to=14)
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=24 to=260 evalue=6.5e-73)
MEL_B2_8_134
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

141662..142987
DNA (1326bp) protein (442aa)
Uncharacterized protein n=16 Tax=Vibrio cholerae RepID=K2UR93_VIBCL
Uncharacterized protein Tax=GWE1_OD1_ACD7_35_17
MEL_B2_8_135
Oxalobacter formigenes, Oxalobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

143073..144161
DNA (1089bp) protein (363aa)
dTDP-6-deoxy-D-xylo-hex-3-ulose aminase n=1 Tax=Oxalobacter formigenes OXCC13 RepID=C3XA11_OXAFO (db=UNIREF evalue=0.0 bit_score=539.0 identity=68.5 coverage=99.44903581267218)
aminotransferase
aminotransferase
(db=HMMPfam db_id=PF01041 from=14 to=358 evalue=2.4e-120 interpro_id=IPR000653 interpro_description=DegT/DnrJ/EryC1/StrS aminotransferase)
MEL_B2_8_136
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

144148..145164
DNA (1017bp) protein (339aa)
glycosyl transferase family protein n=1 Tax=Pectobacterium carotovorum subsp. brasiliensis PBR1692 RepID=UPI0001A430D7 (db=UNIREF evalue=0.0 bit_score=265.0 identity=41.5 coverage=98.52507374631269)
hypothetical protein
seg (db=Seg db_id=seg from=143 to=159)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=7 to=249 evalue=3.8e-39)
MEL_B2_8_137
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(145165..147996)
DNA (2832bp) protein (944aa)
Excinuclease ABC subunit A n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RYI2_THEOJ (db=UNIREF evalue=0.0 bit_score=1195.0 identity=61.1 coverage=98.83474576271186)
excinuclease ABC subunit A
excinuclease ABC subunit A
seg (db=Seg db_id=seg from=569 to=580)
MEL_B2_8_138
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

148113..148757
DNA (645bp) protein (215aa)
membrane protein, MarC family
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
seg (db=Seg db_id=seg from=73 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
MEL_B2_8_139
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

148763..149677
DNA (915bp) protein (305aa)
nadA; quinolinate synthase A (EC:2.5.1.72)
nadA; quinolinate synthase A (EC:2.5.1.72)
Quinolinate synthase A n=6 Tax=Clostridium thermocellum RepID=C7HGC4_CLOTM (db=UNIREF evalue=0.0 bit_score=330.0 identity=55.0 coverage=98.68852459016394)
(db=HMMPfam db_id=PF02445 from=8 to=302 evalue=7.0e-117 interpro_id=IPR003473 interpro_description=Quinolinate synthetase A GO=Molecular Function: quinolinate synthetase A activity (GO:0008987), Biological Process: NAD biosynthetic process (GO:0009435))
MEL_B2_8_140
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(149693..150178)
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y696_9BURK (db=UNIREF evalue=8.4e-45 bit_score=186.0 identity=58.9 coverage=96.91358024691358)
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
ISPF (db=PatternScan db_id=PS01350 from=37 to=52 evalue=0.0 interpro_id=IPR020555 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685))
ispF: 2C-methyl-D-erythritol 2,4-cyclodiphos (db=HMMTigr db_id=TIGR00151 from=4 to=158 evalue=1.8e-77 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
MEL_B2_8_141
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(150168..150971)
DNA (804bp) protein (268aa)
HAD-superfamily hydrolase
Cof-subfamily: Cof-like hydrolase (db=HMMTigr db_id=TIGR00099 from=1 to=257 evalue=2.5e-66 interpro_id=IPR000150 interpro_description=Cof protein GO=Biological Process: metabolic process (GO:0008152), Molecular Function: hydrolase activity (GO:0016787))
HAD-like (db=superfamily db_id=SSF56784 from=1 to=264 evalue=2.4e-64 interpro_id=IPR023214 interpro_description=HAD-like domain)
(db=HMMPfam db_id=PF08282 from=2 to=255 evalue=2.6e-64 interpro_id=IPR013200 interpro_description=HAD superfamily hydrolase-like, type 3)
MEL_B2_8_142
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(150991..151527)
DNA (537bp) protein (179aa)
NUDIX hydrolase
NUDIX_BOX (db=PatternScan db_id=PS00893 from=77 to=98 evalue=0.0 interpro_id=IPR020084 interpro_description=NUDIX hydrolase, conserved site GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=1 to=173 evalue=7.8e-55 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=5 to=177 evalue=2.7e-47 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
MEL_B2_8_143
Clostridium sp. CAG:729, Melainabacteria, Bacteria

Not on your lists

comp(151735..151968)
DNA (234bp) protein (78aa)
151735..151968 - ( gc_cont=0.333)
Uncharacterized protein {ECO:0000313|EMBL:CDE88489.1}; TaxID=1262835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_144
Clostridium sp. CAG:715, Melainabacteria, Bacteria

Not on your lists

152236..152646
DNA (411bp) protein (137aa)
152236..152646 + ( gc_cont=0.336)
Uncharacterized protein {ECO:0000313|EMBL:CCX79364.1}; TaxID=1262834 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_145
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

comp(152707..153099)
DNA (393bp) protein (131aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=74)
seg (db=Seg db_id=seg from=110 to=118)
coiled-coil (db=Coil db_id=coil from=105 to=126 evalue=NA)
MEL_B2_8_146
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(153195..154982)
DNA (1788bp) protein (596aa)
Aspartate--tRNA ligase n=1 Tax=Hippea maritima DSM 10411 RepID=F2LU04_HIPMA (db=UNIREF evalue=0.0 bit_score=647.0 identity=52.0 coverage=98.3221476510067)
aspartyl-tRNA synthetase (EC:6.1.1.12)
aspartyl-tRNA synthetase (EC:6.1.1.12)
seg (db=Seg db_id=seg from=320 to=335)
MEL_B2_8_147
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

155139..156074
DNA (936bp) protein (312aa)
Uncharacterized homolog of PSP1
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (db=HMMPanther db_id=PTHR21600:SF3 from=82 to=226 evalue=6.3e-55)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=82 to=226 evalue=6.3e-55)
(db=HMMPfam db_id=PF04468 from=67 to=152 evalue=1.4e-27 interpro_id=IPR007557 interpro_description=PSP1, C-terminal)
MEL_B2_8_148
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

156127..157587
DNA (1461bp) protein (487aa)
flagellar biosynthesis protein FlhA
seg (db=Seg db_id=seg from=94 to=110)
coiled-coil (db=Coil db_id=coil from=120 to=145 evalue=NA)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
MEL_B2_8_149
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(157584..157982)
DNA (399bp) protein (133aa)
tryptophan-rich sensory protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=72)
MEL_B2_8_150
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

158069..159913
DNA (1845bp) protein (615aa)
family 5 extracellular solute-binding protein
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 n=2 Tax=Cyanothece RepID=B7K3D7_CYAP8 (db=UNIREF evalue=0.0 bit_score=432.0 identity=40.8 coverage=86.1788617886179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
Displaying items 121-150 of 205 in total

View Taxonomy