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MEL_B2_8

Search features with annotation key words

Displaying items 1-30 of 205 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_8_1
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

1..99
DNA (99bp) protein (33aa)
1..99 + ( gc_cont=0.333)
Large exoproteins involved in heme utilization or adhesion {ECO:0000313|EMBL:CDC21048.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environme
MEL_B2_8_2
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

253..2181
DNA (1929bp) protein (643aa)
hypothetical protein
seg (db=Seg db_id=seg from=600 to=612)
seg (db=Seg db_id=seg from=119 to=130)
seg (db=Seg db_id=seg from=291 to=308)
MEL_B2_8_3
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

2293..3009
DNA (717bp) protein (239aa)
seg (db=Seg db_id=seg from=182 to=200)
seg (db=Seg db_id=seg from=164 to=175)
Uncharacterized protein {ECO:0000313|EMBL:CDC21031.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_4
Brachyspira sp. CAG:484, Melainabacteria, Bacteria

Not on your lists

3083..4279
DNA (1197bp) protein (399aa)
hypothetical protein
seg (db=Seg db_id=seg from=187 to=206)
seg (db=Seg db_id=seg from=9 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
MEL_B2_8_5
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

4326..4973
DNA (648bp) protein (216aa)
tolQ; biopolymer transport protein TolQ
transmembrane_regions (db=TMHMM db_id=tmhmm from=110 to=132)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
MEL_B2_8_6
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

5006..5530
DNA (525bp) protein (175aa)
ExbD/TolR family protein
seg (db=Seg db_id=seg from=26 to=35)
seg (db=Seg db_id=seg from=137 to=160)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
MEL_B2_8_7
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

5543..5935
DNA (393bp) protein (131aa)
protein TolR
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=22 to=31)
(db=HMMPfam db_id=PF02472 from=10 to=128 evalue=2.0e-25 interpro_id=IPR003400 interpro_description=Biopolymer transport protein ExbD/TolR GO=Molecular Function: transporter activity (GO:0005215), Biological Process: transport (GO:0006810), Cellular Component: membrane (GO:0016020))
MEL_B2_8_8
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

5997..7868
DNA (1872bp) protein (624aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=556 to=584 evalue=NA)
coiled-coil (db=Coil db_id=coil from=321 to=342 evalue=NA)
seg (db=Seg db_id=seg from=78 to=89)
MEL_B2_8_9
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(7831..8427)
DNA (597bp) protein (199aa)
seg (db=Seg db_id=seg from=153 to=171)
(db=HMMPfam db_id=PF03692 from=21 to=127 evalue=5.3e-10 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:CDC21641.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_10
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(8494..10842)
DNA (2349bp) protein (783aa)
seg (db=Seg db_id=seg from=192 to=205)
seg (db=Seg db_id=seg from=687 to=700)
seg (db=Seg db_id=seg from=635 to=648)
EF_HAND_1 (db=PatternScan db_id=PS00018 from=24 to=36 evalue=0.0 interpro_id=IPR018247 interpro_description=EF-Hand 1, calcium-binding site)
MEL_B2_8_11
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

11047..11817
DNA (771bp) protein (257aa)
seg (db=Seg db_id=seg from=240 to=256)
seg (db=Seg db_id=seg from=218 to=235)
seg (db=Seg db_id=seg from=74 to=86)
Uncharacterized protein {ECO:0000313|EMBL:CDC21645.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_12
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

11829..12266
DNA (438bp) protein (146aa)
seg (db=Seg db_id=seg from=6 to=19)
Uncharacterized protein {ECO:0000313|EMBL:CDC21646.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_13
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(12244..12810)
DNA (567bp) protein (189aa)
5,10-methenyltetrahydrofolate synthetase
NagB/RpiA/CoA transferase-like (db=superfamily db_id=SSF100950 from=3 to=184 evalue=3.7e-34)
MTHFS_bact: 5-formyltetrahydrofolate cyclo (db=HMMTigr db_id=TIGR02727 from=5 to=175 evalue=1.5e-33 interpro_id=IPR002698 interpro_description=5-formyltetrahydrofolate cyclo-ligase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid-containing compound biosynthetic process (GO:0009396), Molecular Function: 5-formyltetrahydrofolate cyclo-ligase activity (GO:0030272))
no description (db=Gene3D db_id=G3DSA:3.40.50.10420 from=3 to=178 evalue=5.2e-30 interpro_id=IPR024185 interpro_description=5-formyltetrahydrofolate cyclo-ligase-like domain)
MEL_B2_8_14
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

12914..13264
DNA (351bp) protein (117aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=76 evalue=4.2e-13 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF01381 from=10 to=64 evalue=2.7e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=9 to=64 evalue=3.5e-11 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=6 to=80 evalue=2.8e-09 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
MEL_B2_8_15
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

13264..13842
DNA (579bp) protein (193aa)
cob(I)alamin adenosyltransferase (EC:2.5.1.17)
seg (db=Seg db_id=seg from=125 to=137)
ATP:cob(I)alamin adenosyltransferase, CobA type (db=HMMPIR db_id=PIRSF015617 from=2 to=192 evalue=9.2e-66 interpro_id=IPR003724 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
(db=HMMPfam db_id=PF02572 from=16 to=192 evalue=4.2e-60 interpro_id=IPR003724 interpro_description=Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: cob(I)yrinic acid a,c-diamide adenosyltransferase activity (GO:0008817), Biological Process: cobalamin biosynthetic process (GO:0009236))
MEL_B2_8_16
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

13910..14164
DNA (255bp) protein (85aa)
13910..14164 + ( gc_cont=0.392)
Uncharacterized protein {ECO:0000313|EMBL:CDC21650.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_17
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

14202..16316
DNA (2115bp) protein (705aa)
seg (db=Seg db_id=seg from=455 to=472)
seg (db=Seg db_id=seg from=496 to=525)
seg (db=Seg db_id=seg from=531 to=559)
seg (db=Seg db_id=seg from=616 to=637)
MEL_B2_8_18
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

16396..16881
DNA (486bp) protein (162aa)
Hpt protein
seg (db=Seg db_id=seg from=145 to=155)
no description (db=Gene3D db_id=G3DSA:1.20.120.340 from=1 to=128 evalue=5.7e-36 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
Flagellar export chaperone FliS (db=superfamily db_id=SSF101116 from=2 to=125 evalue=6.0e-36 interpro_id=IPR003713 interpro_description=Flagellar protein FliS GO=Cellular Component: bacterial-type flagellum (GO:0009288), Biological Process: flagellum assembly (GO:0009296))
MEL_B2_8_19
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

16884..17252
DNA (369bp) protein (123aa)
16884..17252 + ( gc_cont=0.306)
Uncharacterized protein {ECO:0000313|EMBL:CDC21653.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_20
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

17249..18166
DNA (918bp) protein (306aa)
cation diffusion facilitator family transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=119 to=138)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
MEL_B2_8_21
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

18180..19268
DNA (1089bp) protein (363aa)
adenylate cyclase (EC:4.6.1.1)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
seg (db=Seg db_id=seg from=6 to=15)
seg (db=Seg db_id=seg from=93 to=109)
MEL_B2_8_22
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

19268..21679
DNA (2412bp) protein (804aa)
ATP-dependent DNA helicase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQ62_SYNP2 (db=UNIREF evalue=0.0 bit_score=649.0 identity=42.3 coverage=98.13432835820896)
recG; ATP-dependent DNA helicase RecG
recG; ATP-dependent DNA helicase RecG
seg (db=Seg db_id=seg from=649 to=660)
MEL_B2_8_23
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

21958..22488
DNA (531bp) protein (177aa)
seg (db=Seg db_id=seg from=129 to=142)
(db=HMMPfam db_id=PF04275 from=8 to=108 evalue=1.3e-14 interpro_id=IPR005919 interpro_description=Higher eukaryotic phosphomevalonate kinase GO=Molecular Function: phosphomevalonate kinase activity (GO:0004631), Cellular Component: cytoplasm (GO:0005737), Biological Process: cholesterol biosynthetic process (GO:0006695))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=169 evalue=9.8e-10)
PHOSPHOMEVALONATE KINASE (db=HMMPanther db_id=PTHR13101 from=1 to=173 evalue=5.0e-08 interpro_id=IPR005919 interpro_description=Higher eukaryotic phosphomevalonate kinase GO=Molecular Function: phosphomevalonate kinase activity (GO:0004631), Cellular Component: cytoplasm (GO:0005737), Biological Process: cholesterol biosynthetic process (GO:0006695))
MEL_B2_8_24
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(22501..22707)
DNA (207bp) protein (69aa)
22501..22707 - ( gc_cont=0.324)
Uncharacterized protein {ECO:0000313|EMBL:CDC21658.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_25
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

22845..23282
DNA (438bp) protein (146aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6)
Sugar-phosphate isomerase, RpiB/LacA/LacB types (db=HMMPIR db_id=PIRSF005384 from=1 to=145 evalue=3.5e-78 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
rpiB: ribose 5-phosphate isomerase B (db=HMMTigr db_id=TIGR01120 from=4 to=145 evalue=2.2e-74 interpro_id=IPR004785 interpro_description=Ribose 5-phosphate isomerase B GO=Molecular Function: ribose-5-phosphate isomerase activity (GO:0004751), Biological Process: pentose-phosphate shunt (GO:0006098))
rpiB_lacA_lacB: sugar-phosphate isomer (db=HMMTigr db_id=TIGR00689 from=5 to=145 evalue=3.7e-73 interpro_id=IPR003500 interpro_description=Ribose/galactose isomerase GO=Biological Process: carbohydrate metabolic process (GO:0005975))
MEL_B2_8_26
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(23279..24160)
DNA (882bp) protein (294aa)
seg (db=Seg db_id=seg from=89 to=98)
CheY-like (db=superfamily db_id=SSF52172 from=52 to=159 evalue=3.7e-20 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
(db=HMMPfam db_id=PF00072 from=57 to=162 evalue=1.9e-17 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=55 to=185 evalue=1.5e-15)
MEL_B2_8_27
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(24195..24938)
DNA (744bp) protein (248aa)
tRNA (Guanine37-N(1)-) methyltransferase
(db=HMMPfam db_id=PF01746 from=26 to=218 evalue=1.6e-52 interpro_id=IPR016009 interpro_description=tRNA (guanine-N1-)-methyltransferase)
tRNA-(m1G37) methyltransferase (db=HMMPIR db_id=PIRSF000386 from=1 to=240 evalue=1.6e-123 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
trmD: tRNA (guanine-N1)-methyltransferase (db=HMMTigr db_id=TIGR00088 from=1 to=241 evalue=6.8e-114 interpro_id=IPR002649 interpro_description=tRNA (guanine-N1-)-methyltransferase, bacteria GO=Molecular Function: RNA binding (GO:0003723), Biological Process: tRNA processing (GO:0008033), Molecular Function: tRNA (guanine-N1-)-methyltransferase activity (GO:0009019))
MEL_B2_8_28
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(24935..25474)
DNA (540bp) protein (180aa)
rimM; putative 16S rRNA-processing protein rimM
16S_RimM: 16S rRNA processing protein RimM (db=HMMTigr db_id=TIGR02273 from=4 to=168 evalue=2.6e-36 interpro_id=IPR011961 interpro_description=16S rRNA processing protein RimM GO=Cellular Component: ribosome (GO:0005840), Biological Process: rRNA processing (GO:0006364), Molecular Function: ribosome binding (GO:0043022))
Translation proteins (db=superfamily db_id=SSF50447 from=3 to=91 evalue=2.1e-17 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
PRC-barrel domain (db=superfamily db_id=SSF50346 from=98 to=168 evalue=1.8e-15 interpro_id=IPR011033 interpro_description=PRC-barrel-like)
MEL_B2_8_29
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(25467..26618)
DNA (1152bp) protein (384aa)
Putative uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TD81_9CHLR (db=UNIREF evalue=1.1e-23 bit_score=117.0 identity=25.5 coverage=84.89583333333334)
seg (db=Seg db_id=seg from=366 to=381)
seg (db=Seg db_id=seg from=346 to=362)
seg (db=Seg db_id=seg from=180 to=198)
MEL_B2_8_30
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(26761..27198)
DNA (438bp) protein (146aa)
D-tyrosyl-tRNA(Tyr) deacylase
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Desulfosporosinus orientis DSM 765 RepID=G7W5I8_DESOD (db=UNIREF evalue=6.2e-41 bit_score=173.0 identity=56.9 coverage=97.94520547945206)
D-TYROSYL-TRNA(TYR) DEACYLASE (db=HMMPanther db_id=PTHR10472:SF4 from=1 to=145 evalue=4.5e-72)
D-TYROSYL-TRNA(TYR) DEACYLASE (db=HMMPanther db_id=PTHR10472 from=1 to=145 evalue=4.5e-72 interpro_id=IPR003732 interpro_description=D-tyrosyl-tRNA(Tyr) deacylase GO=Cellular Component: cytoplasm (GO:0005737), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788), Biological Process: D-amino acid catabolic process (GO:0019478))
Displaying items 1-30 of 205 in total

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