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MEL_B2_8

Search features with annotation key words

Displaying items 181-205 of 205 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
MEL_B2_8_181
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(189825..190388)
DNA (564bp) protein (188aa)
50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=61 to=77 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=1 to=187 evalue=4.3e-101)
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=1 to=187 evalue=4.3e-101 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_182
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(190494..190844)
DNA (351bp) protein (117aa)
rplX; 50S ribosomal protein L24
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=12 to=114 evalue=4.0e-46 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=7 to=115 evalue=9.6e-37 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins SH3-like domain (db=superfamily db_id=SSF50104 from=14 to=113 evalue=4.9e-31 interpro_id=IPR008991 interpro_description=Translation protein SH3-like)
MEL_B2_8_183
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(190859..191227)
DNA (369bp) protein (123aa)
rplN; 50S ribosomal protein L14
seg (db=Seg db_id=seg from=51 to=67)
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=122 evalue=1.9e-81 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
MEL_B2_8_184
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(191287..191532)
DNA (246bp) protein (82aa)
30S ribosomal protein S17
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=54 to=66 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=3 to=74 evalue=3.2e-39 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=1 to=81 evalue=1.2e-29 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_185
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(191534..191728)
DNA (195bp) protein (65aa)
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=1 Tax=Symbiobacterium thermophilum RepID=RL29_SYMTH (db=UNIREF evalue=1.5e-07 bit_score=60.0 identity=39.1 coverage=95.38461538461539)
coiled-coil (db=Coil db_id=coil from=11 to=32 evalue=NA)
(db=HMMPfam db_id=PF00831 from=4 to=60 evalue=1.1e-15 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_186
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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comp(191769..192188)
DNA (420bp) protein (140aa)
rplP; putative 50S ribosomal protein L16
seg (db=Seg db_id=seg from=5 to=19)
RIBOSOMAL_L16_2 (db=PatternScan db_id=PS00701 from=82 to=93 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=1.4e-81 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
MEL_B2_8_187
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(192222..192956)
DNA (735bp) protein (245aa)
30S ribosomal protein S3 n=1 Tax=Peptoniphilus sp. oral taxon 375 str. F0436 RepID=F9MSX2_9FIRM (db=UNIREF evalue=0.0 bit_score=281.0 identity=57.1 coverage=96.73469387755102)
rpsC; 30S ribosomal protein S3
seg (db=Seg db_id=seg from=233 to=242)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=163 to=197 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_188
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(192968..193309)
DNA (342bp) protein (114aa)
ribosomal protein L22, bacterial type
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=84 to=108 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L22 (db=superfamily db_id=SSF54843 from=2 to=111 evalue=7.0e-28 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00237 from=6 to=109 evalue=1.2e-27 interpro_id=IPR001063 interpro_description=Ribosomal protein L22/L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_189
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(193313..193594)
DNA (282bp) protein (94aa)
rpsS; 30S ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=92 evalue=2.6e-63 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=93 evalue=4.2e-48 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_190
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(193606..194439)
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Eubacterium limosum KIST612 RepID=E3GH21_EUBLK (db=UNIREF evalue=0.0 bit_score=376.0 identity=65.3 coverage=97.84172661870504)
50S ribosomal protein L2
50S ribosomal protein L2
seg (db=Seg db_id=seg from=230 to=252)
MEL_B2_8_191
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(194497..194805)
DNA (309bp) protein (103aa)
50S ribosomal protein L23 n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NXD1_9FIRM (db=UNIREF evalue=2.9e-16 bit_score=90.0 identity=56.8 coverage=76.69902912621359)
LSU ribosomal protein L23P
(db=HMMPfam db_id=PF00276 from=12 to=93 evalue=7.4e-21 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=8 to=95 evalue=8.5e-21 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
MEL_B2_8_192
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(194805..195440)
DNA (636bp) protein (212aa)
50S ribosomal protein L4
seg (db=Seg db_id=seg from=105 to=118)
seg (db=Seg db_id=seg from=196 to=207)
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=20 to=209 evalue=1.8e-75)
MEL_B2_8_193
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(195487..196152)
DNA (666bp) protein (222aa)
50S ribosomal protein L3
RIBOSOMAL_L3 (db=PatternScan db_id=PS00474 from=112 to=135 evalue=0.0 interpro_id=IPR019926 interpro_description=Ribosomal protein L3, conserved site)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=14 to=214 evalue=8.3e-125 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L3 (db=HMMPanther db_id=PTHR11229 from=12 to=217 evalue=1.4e-98 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MEL_B2_8_194
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists


comp(196315..196632)
DNA (318bp) protein (106aa)
rpsJ; 30S ribosomal protein S10
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=32 to=47 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=7 to=105 evalue=1.5e-65 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=7 to=105 evalue=5.6e-55 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
MEL_B2_8_195
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

196890..199046
DNA (2157bp) protein (719aa)
adenylate/guanylate cyclase catalytic domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=385 to=407)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
seg (db=Seg db_id=seg from=705 to=715)
MEL_B2_8_196
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

199033..200718
DNA (1686bp) protein (562aa)
Fibronectin-binding A domain protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MH76_ALKOO (db=UNIREF evalue=0.0 bit_score=340.0 identity=32.9 coverage=99.11032028469751)
fibronectin-binding A domain-containing protein
fibronectin-binding A domain-containing protein
seg (db=Seg db_id=seg from=311 to=323)
MEL_B2_8_197
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(200719..201177)
DNA (459bp) protein (153aa)
seg (db=Seg db_id=seg from=68 to=82)
Uncharacterized protein {ECO:0000313|EMBL:CDC18377.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_198
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

201272..202048
DNA (777bp) protein (259aa)
coiled-coil (db=Coil db_id=coil from=227 to=248 evalue=NA)
Type II/IV secretion system protein {ECO:0000313|EMBL:CDC18379.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source=
MEL_B2_8_199
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(202095..202769)
DNA (675bp) protein (225aa)
coiled-coil (db=Coil db_id=coil from=191 to=212 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:CDC18382.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_200
Clostridium sp. CAG:306, Melainabacteria, Bacteria

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202974..204437
DNA (1464bp) protein (488aa)
Glutamyl-tRNA(Gln) amidotransferase, A subunit n=8 Tax=Caldicellulosiruptor RepID=A4XHY8_CALS8 (db=UNIREF evalue=0.0 bit_score=587.0 identity=59.8 coverage=96.72131147540983)
aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
seg (db=Seg db_id=seg from=153 to=165)
MEL_B2_8_201
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

204464..205321
DNA (858bp) protein (286aa)
hypothetical protein
TPR-repeat-containing protein n=2 Tax=Clostridium acetobutylicum RepID=F0K544_CLOAE (db=UNIREF evalue=2.0e-11 bit_score=75.0 identity=24.9 coverage=81.81818181818183)
seg (db=Seg db_id=seg from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
MEL_B2_8_202
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(205394..206593)
DNA (1200bp) protein (400aa)
Aminotransferase, class V n=2 Tax=Trichodesmium erythraeum IMS101 RepID=Q10X82_TRIEI (db=UNIREF evalue=0.0 bit_score=480.0 identity=61.3 coverage=95.75)
class V aminotransferase
class V aminotransferase
seg (db=Seg db_id=seg from=322 to=333)
MEL_B2_8_203
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

comp(206596..207417)
DNA (822bp) protein (274aa)
Nitrogen fixation protein nifU n=1 Tax=delta proteobacterium NaphS2 RepID=D8EZT1_9DELT (db=UNIREF evalue=0.0 bit_score=314.0 identity=54.9 coverage=98.90510948905109)
Fe-S cluster assembly protein NifU
Fe-S cluster assembly protein NifU
Nitrogen fixation protein NifU (db=HMMPIR db_id=PIRSF000375 from=1 to=273 evalue=7.3e-135 interpro_id=IPR016217 interpro_description=Nitrogen fixation, NifU)
MEL_B2_8_204
Clostridium sp. CAG:306, Melainabacteria, Bacteria

Not on your lists

207607..207732
DNA (126bp) protein (42aa)
seg (db=Seg db_id=seg from=12 to=26)
Uncharacterized protein {ECO:0000313|EMBL:CDC18392.1}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
MEL_B2_8_205
unknown

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comp(207819..207890)
DNA (72bp) protein (24aa)
207819..207890 - ( gc_cont=0.236)
Displaying items 181-205 of 205 in total

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