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ACD20_10

Alias: ACD20_20526.123248.14

Search features with annotation key words

Displaying items 61-90 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_10_61

Not on your lists

comp(66613..68601)
DNA (1989bp) protein (663aa)
hypothetical protein
hypothetical protein
HyfB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBF3_DESAH (db=UNIREF evalue=3.0e-103 bit_score=380.0 identity=41.41 coverage=87.0286576168929)
transmembrane_regions (db=TMHMM db_id=tmhmm from=523 to=545)
hyfB. psort predicted membrane bound. 15 helices kelly wrighton (11/15/12)
ACD20_10_62

Not on your lists

comp(68669..68764)
DNA (96bp) protein (32aa)
68669..68764 - (rbs_motif=AGxAGG/AGGxGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03931.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_63

Not on your lists

69570..69842
DNA (273bp) protein (91aa)
seg (db=Seg db_id=seg from=34 to=54)
Uncharacterized protein {ECO:0000313|EMBL:EKE03932.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_64

Not on your lists

69878..70213
DNA (336bp) protein (112aa)
seg (db=Seg db_id=seg from=34 to=49)
Uncharacterized protein {ECO:0000313|EMBL:EKE03933.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_65

Not on your lists

70368..70961
DNA (594bp) protein (198aa)
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
Uncharacterized protein {ECO:0000313|EMBL:EKE03905.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_66

Not on your lists

70985..71578
DNA (594bp) protein (198aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
seg (db=Seg db_id=seg from=41 to=52)
seg (db=Seg db_id=seg from=5 to=17)
Uncharacterized protein {ECO:0000313|EMBL:EKE03906.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_67

Not on your lists

71581..72651
DNA (1071bp) protein (357aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=224 to=245 evalue=NA)
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=15 to=336 evalue=8.9e-41)
Radical_SAM (db=HMMPfam db_id=PF04055 from=21 to=190 evalue=1.9e-13 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
ACD20_10_68

Not on your lists

72743..73099
DNA (357bp) protein (119aa)
hypothetical protein
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=2 to=91 evalue=9.7e-20 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG (db=HMMPfam db_id=PF01541 from=4 to=78 evalue=9.7e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
no description (db=HMMSmart db_id=SM00465 from=3 to=83 evalue=6.3e-05 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
ACD20_10_69

Not on your lists

73160..73444
DNA (285bp) protein (95aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKE03909.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_70

Not on your lists

73437..73775
DNA (339bp) protein (113aa)
73437..73775 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03910.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_71

Not on your lists

73807..74109
DNA (303bp) protein (101aa)
seg (db=Seg db_id=seg from=51 to=68)
Uncharacterized protein {ECO:0000313|EMBL:EKE03911.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
membrane bound hypothetical protein. kelly wrighton (11/15/12)
ACD20_10_72

Not on your lists

74124..75335
DNA (1212bp) protein (404aa)
Predicted Fe-S oxidoreductases
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=4 to=320 evalue=1.0e-61)
Radical_SAM (db=HMMPfam db_id=PF04055 from=13 to=154 evalue=8.0e-19 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
Coenzyme PQQ biosynthesis protein E (db=HMMPIR db_id=PIRSF037420 from=1 to=354 evalue=1.8e-18 interpro_id=IPR017200 interpro_description=Coenzyme PQQ biosynthesis protein E)
ACD20_10_73

Not on your lists

comp(75535..75708)
DNA (174bp) protein (58aa)
75535..75708 - (rbs_motif=AGGA/GGAG/GAGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03913.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_74

Not on your lists

comp(75907..76281)
DNA (375bp) protein (125aa)
MerR family transcriptional regulator
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=20 to=87 evalue=1.6e-14 interpro_id=IPR009061 interpro_description=Putative DNA binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
no description (db=HMMSmart db_id=SM00422 from=21 to=90 evalue=8.0e-11 interpro_id=IPR000551 interpro_description=HTH transcriptional regulator, MerR GO=Molecular Function: transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.1660.10 from=21 to=87 evalue=1.4e-09)
ACD20_10_75

Not on your lists

comp(76334..76549)
DNA (216bp) protein (72aa)
76334..76549 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03915.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_76
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

Not on your lists

comp(76852..77562)
DNA (711bp) protein (237aa)
Tryptophan synthase, beta subunit n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HLG4_CYAP4 (db=UNIREF evalue=1.0e-89 bit_score=332.0 identity=68.24 coverage=96.2025316455696)
tryptophan synthase subunit beta
tryptophan synthase subunit beta
TRP_SYNTHASE_BETA (db=PatternScan db_id=PS00168 from=92 to=106 evalue=0.0 interpro_id=IPR006653 interpro_description=Tryptophan synthase, beta chain, conserved site GO=Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolic process (GO:0006568))
ACD20_10_77

Not on your lists

77923..78987
DNA (1065bp) protein (355aa)
hypothetical protein
hypothetical protein alias=ACD20_C00010G00077,ACD20_20526.123248.14G0077,ACD20_20526.123248.14_77 id=18026 tax=ACD20 species=uncultured Termite group 1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Elusimicrobia organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03904.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_78

Not on your lists

79683..81683
DNA (2001bp) protein (667aa)
hypothetical protein
TPR Domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q22YL2_TETTH (db=UNIREF evalue=2.0e-54 bit_score=218.0 identity=28.68 coverage=93.1034482758621)
seg (db=Seg db_id=seg from=8 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
ACD20_10_79

Not on your lists

81695..82108
DNA (414bp) protein (138aa)
seg (db=Seg db_id=seg from=5 to=10)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=19 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE03903.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_80

Not on your lists

comp(82380..83444)
DNA (1065bp) protein (355aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=5 Tax=Dehalococcoides RepID=ISPG_DEHSB (db=UNIREF evalue=1.0e-99 bit_score=366.0 identity=62.69 coverage=93.5211267605634)
seg (db=Seg db_id=seg from=305 to=323)
ACD20_10_81

Not on your lists

comp(83694..84137)
DNA (444bp) protein (148aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
seg (db=Seg db_id=seg from=133 to=146)
dut: dUTP diphosphatase (db=HMMTigr db_id=TIGR00576 from=5 to=147 evalue=2.4e-75 interpro_id=IPR008181 interpro_description=DeoxyUTP pyrophosphatase domain, subfamily 1, GO=Molecular Function: dUTP diphosphatase activity (GO:0004170), Biological Process: dUTP metabolic process (GO:0046080))
DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE (db=HMMPanther db_id=PTHR11241 from=8 to=147 evalue=2.1e-52)
ACD20_10_82

Not on your lists

comp(84154..85407)
DNA (1254bp) protein (418aa)
Predicted Zn-dependent peptidases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2S9_PELTS (db=UNIREF evalue=5.0e-105 bit_score=384.0 identity=45.19 coverage=96.6507177033493)
PqqL; Zn-dependent peptidase
PqqL; Zn-dependent peptidase
coiled-coil (db=Coil db_id=coil from=113 to=134 evalue=NA)
ACD20_10_83

Not on your lists

85670..86584
DNA (915bp) protein (305aa)
histidine kinase
seg (db=Seg db_id=seg from=10 to=19)
seg (db=Seg db_id=seg from=68 to=79)
CheY-like (db=superfamily db_id=SSF52172 from=60 to=165 evalue=1.3e-19 interpro_id=IPR011006 interpro_description=CheY-like)
ACD20_10_84

Not on your lists

86822..87061
DNA (240bp) protein (80aa)
86822..87061 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03877.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_85

Not on your lists

87067..87891
DNA (825bp) protein (275aa)
peptidase M55, D-aminopeptidase
Peptidase_M55 (db=HMMPfam db_id=PF04951 from=3 to=266 evalue=8.1e-77 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
Dipeptide transport protein (db=superfamily db_id=SSF63992 from=2 to=269 evalue=1.2e-68 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
D-aminopeptidase, DppA type (db=HMMPIR db_id=PIRSF015853 from=1 to=271 evalue=1.2e-65 interpro_id=IPR007035 interpro_description=Peptidase M55, D-aminopeptidase)
ACD20_10_86

Not on your lists

comp(87892..89508)
DNA (1617bp) protein (539aa)
aminoacyl-histidine dipeptidase
coiled-coil (db=Coil db_id=coil from=318 to=339 evalue=NA)
AMINOACYL-HISTIDINE PEPTIDASE (db=HMMPanther db_id=PTHR11014:SF2 from=35 to=537 evalue=1.5e-77 interpro_id=IPR001160 interpro_description=Peptidase M20C, Xaa-His dipeptidase GO=Biological Process: proteolysis (GO:0006508))
PEPTIDASE M20 FAMILY MEMBER (db=HMMPanther db_id=PTHR11014 from=35 to=537 evalue=1.5e-77)
ACD20_10_87

Not on your lists

comp(89645..90535)
DNA (891bp) protein (297aa)
Glycyl-tRNA synthetase alpha subunit n=4 Tax=Cyanothece RepID=SYGA_CYAP7 (db=UNIREF evalue=1.0e-124 bit_score=449.0 identity=68.58 coverage=99.3265993265993)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
glyQ: glycyl-tRNA synthetase, alpha subunit (db=HMMTigr db_id=TIGR00388 from=3 to=291 evalue=2.3e-155 interpro_id=IPR002310 interpro_description=Glycyl-tRNA synthetase, class IIc, alpha subunit GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
ACD20_10_88

Not on your lists

90741..91763
DNA (1023bp) protein (341aa)
molecular chaperone DnaJ
Chaperone DnaJ domain protein n=1 Tax=bacterium Ellin514 RepID=B9XFY3_9BACT (db=UNIREF evalue=9.0e-53 bit_score=211.0 identity=39.16 coverage=92.6686217008798)
seg (db=Seg db_id=seg from=100 to=117)
seg (db=Seg db_id=seg from=322 to=335)
ACD20_10_89

Not on your lists

91782..92555
DNA (774bp) protein (258aa)
UBA/THIF-type NAD/FAD binding protein
Activating enzymes of the ubiquitin-like proteins (db=superfamily db_id=SSF69572 from=8 to=253 evalue=7.9e-59 interpro_id=IPR009036 interpro_description=Molybdenum cofactor biosynthesis, MoeB)
UBIQUITIN-ACTIVATING ENZYME E1 (db=HMMPanther db_id=PTHR10953 from=8 to=157 evalue=3.0e-48)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=10 to=157 evalue=4.8e-48 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: binding (GO:0005488), Biological Process: metabolic process (GO:0008152))
ACD20_10_90

Not on your lists

comp(92601..92858)
DNA (258bp) protein (86aa)
92601..92858 - (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03883.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 61-90 of 119 in total

View Taxonomy