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ACD20_10

Alias: ACD20_20526.123248.14

Search features with annotation key words

Displaying items 91-119 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_10_91

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93266..93778
DNA (513bp) protein (171aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
seg (db=Seg db_id=seg from=98 to=107)
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK (db=superfamily db_id=SSF55083 from=1 to=163 evalue=2.8e-55 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
folK: 2-amino-4-hydroxy-6-hydroxymethyldihyd (db=HMMTigr db_id=TIGR01498 from=4 to=136 evalue=4.8e-53 interpro_id=IPR000550 interpro_description=7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO=Molecular Function: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity (GO:0003848), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD20_10_92

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93771..94556
DNA (786bp) protein (262aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
seg (db=Seg db_id=seg from=123 to=139)
TRP_SYNTHASE_ALPHA (db=PatternScan db_id=PS00167 from=46 to=59 evalue=0.0 interpro_id=IPR018204 interpro_description=Tryptophan synthase, alpha chain, active site)
Trp_syntA (db=HMMPfam db_id=PF00290 from=11 to=254 evalue=2.5e-91 interpro_id=IPR002028 interpro_description=Tryptophan synthase, alpha chain GO=Molecular Function: tryptophan synthase activity (GO:0004834), Biological Process: tryptophan metabolic process (GO:0006568))
ACD20_10_93

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94691..95923
DNA (1233bp) protein (411aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYR0_9CLOT (db=UNIREF evalue=2.0e-63 bit_score=246.0 identity=37.86 coverage=98.0535279805353)
seg (db=Seg db_id=seg from=272 to=291)
TIGR00275: flavoprotein, HI0933 family (db=HMMTigr db_id=TIGR00275 from=4 to=405 evalue=2.7e-129 interpro_id=IPR004792 interpro_description=Conserved hypothetical protein CHP00275, flavoprotein HI0933-like)
signal peptide- cytoplasmic membrane or periplasm. FAD dependent oxidoreductase [Clostridium thermocellum ATCC 27405. same contig as hydrogenase? kelly wrighton (11/15/12)
ACD20_10_94

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comp(95928..96836)
DNA (909bp) protein (303aa)
atpG; F0F1 ATP synthase subunit gamma (EC:3.6.3.14)
seg (db=Seg db_id=seg from=246 to=265)
seg (db=Seg db_id=seg from=23 to=35)
ATPsyn_F1gamma: ATP synthase F1, gamma (db=HMMTigr db_id=TIGR01146 from=1 to=302 evalue=9.8e-109 interpro_id=IPR000131 interpro_description=ATPase, F1 complex, gamma subunit GO=Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, catalytic core F(1) (GO:0045261), Molecular Function: hydrogen ion transporting ATP synthase activity, rotational mechanism (GO:0046933), Molecular Function: proton-transporting ATPase activity, rotat
ACD20_10_95

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comp(96845..98371)
DNA (1527bp) protein (509aa)
ATP synthase subunit alpha n=2 Tax=Synechococcus RepID=ATPA_SYNJA (db=UNIREF evalue=0.0 bit_score=677.0 identity=68.75 coverage=90.5697445972495)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
atpA; F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
seg (db=Seg db_id=seg from=485 to=497)
ACD20_10_96

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comp(98441..98992)
DNA (552bp) protein (184aa)
ATP synthase F1 subunit delta (EC:3.6.3.14)
coiled-coil (db=Coil db_id=coil from=122 to=143 evalue=NA)
seg (db=Seg db_id=seg from=63 to=76)
seg (db=Seg db_id=seg from=81 to=88)
ACD20_10_97

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comp(99003..99551)
DNA (549bp) protein (183aa)
coiled-coil (db=Coil db_id=coil from=65 to=93 evalue=NA)
seg (db=Seg db_id=seg from=61 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=44)
ATP-synt_B (db=HMMPfam db_id=PF00430 from=30 to=157 evalue=6.9e-12 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
ACD20_10_98

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comp(99561..100034)
DNA (474bp) protein (158aa)
ATP synthase F0 subunit B
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=28)
ATP-synt_B (db=HMMPfam db_id=PF00430 from=7 to=137 evalue=5.6e-21 interpro_id=IPR002146 interpro_description=ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO=Molecular Function: hydrogen ion transmembrane transporter activity (GO:0015078), Biological Process: ATP synthesis coupled proton transport (GO:0015986), Cellular Component: proton-transporting ATP synthase complex, coupling factor F(o) (GO:0045263))
ATP_synth_b_bact (db=HAMAP db_id=MF_01398 from=2 to=155 evalue=10.518)
ACD20_10_99

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comp(100049..100288)
DNA (240bp) protein (80aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
seg (db=Seg db_id=seg from=12 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=60 to=79)
ACD20_10_100

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comp(100379..101077)
DNA (699bp) protein (233aa)
atpI; F0F1 ATP synthase subunit A
ATP synthase subunit a, chloroplastic n=1 Tax=Parachlorella kessleri RepID=C7BEZ7_CHLKE (db=UNIREF evalue=2.0e-51 bit_score=205.0 identity=49.35 coverage=97.8540772532189)
transmembrane_regions (db=TMHMM db_id=tmhmm from=173 to=195)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
ACD20_10_101

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comp(101255..101422)
DNA (168bp) protein (56aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=50)
ATPase_gene1 (db=HMMPfam db_id=PF09527 from=5 to=52 evalue=5.9e-13)
Uncharacterized protein {ECO:0000313|EMBL:EKE03894.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_102

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comp(101559..103121)
DNA (1563bp) protein (521aa)
Gamma-glutamyltransferase
N-terminal nucleophile aminohydrolases (Ntn hydrolases) (db=superfamily db_id=SSF56235 from=1 to=507 evalue=6.8e-116)
G_glu_transpept (db=HMMPfam db_id=PF01019 from=24 to=507 evalue=4.1e-102 interpro_id=IPR000101 interpro_description=Gamma-glutamyltranspeptidase GO=Molecular Function: gamma-glutamyltransferase activity (GO:0003840))
GAMMA GLUTAMYL TRANSPEPTIDASES (db=HMMPanther db_id=PTHR11686 from=5 to=514 evalue=5.0e-90 interpro_id=IPR000101 interpro_description=Gamma-glutamyltranspeptidase GO=Molecular Function: gamma-glutamyltransferase activity (GO:0003840))
ACD20_10_103

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103267..104967
DNA (1701bp) protein (567aa)
Sensor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXZ9_9BACT (db=UNIREF evalue=4.0e-66 bit_score=256.0 identity=46.15 coverage=46.7372134038801)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
coiled-coil (db=Coil db_id=coil from=70 to=91 evalue=NA)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=8 to=551 evalue=3.4e-94)
ACD20_10_104

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104968..105396
DNA (429bp) protein (143aa)
response regulator receiver domain-containing protein
no description (db=HMMSmart db_id=SM00448 from=8 to=123 evalue=5.6e-33 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=5 to=127 evalue=8.2e-33 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=2 to=127 evalue=7.0e-30)
ACD20_10_105

Not on your lists

105528..106190
DNA (663bp) protein (221aa)
hypothetical protein
seg (db=Seg db_id=seg from=33 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=48)
SPASE_I_3 (db=PatternScan db_id=PS00761 from=172 to=185 evalue=0.0 interpro_id=IPR019758 interpro_description=Peptidase S26A, signal peptidase I, conserved site GO=Molecular Function: serine-type peptidase activity (GO:0008236), Cellular Component: integral to membrane (GO:0016021))
ACD20_10_106

Not on your lists

comp(106326..107261)
DNA (936bp) protein (312aa)
N-acetylmuramic acid 6-phosphate etherase
coiled-coil (db=Coil db_id=coil from=276 to=297 evalue=NA)
TIGR00274: N-acetylmuramic acid 6-phosphate (db=HMMTigr db_id=TIGR00274 from=5 to=295 evalue=1.3e-139 interpro_id=IPR005488 interpro_description=Glucokinase regulatory-like protein GO=Molecular Function: carbon-oxygen lyase activity (GO:0016835), Biological Process: amino sugar catabolic process (GO:0046348))
no description (db=Gene3D db_id=G3DSA:3.40.50.10490 from=2 to=249 evalue=3.2e-92)
murein turnover, recycling Jill Banfield (11/15/12)
ACD20_10_107

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107456..109594
DNA (2139bp) protein (713aa)
polyribonucleotide nucleotidyltransferase
polyribonucleotide nucleotidyltransferase
Polyribonucleotide nucleotidyltransferase n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=PNP_HELMI (db=UNIREF evalue=0.0 bit_score=754.0 identity=52.54 coverage=97.8962131837307)
seg (db=Seg db_id=seg from=272 to=283)
ACD20_10_108

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comp(109737..110501)
DNA (765bp) protein (255aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
seg (db=Seg db_id=seg from=95 to=107)
OMPDECASE (db=PatternScan db_id=PS00156 from=63 to=76 evalue=0.0 interpro_id=IPR018089 interpro_description=Orotidine 5'-phosphate decarboxylase, active site GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207))
no description (db=Gene3D db_id=G3DSA:3.20.20.70 from=7 to=246 evalue=3.4e-67 interpro_id=IPR013785 interpro_description=Aldolase-type TIM barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD20_10_109

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comp(110645..112213)
DNA (1569bp) protein (523aa)
Pyruvate carboxyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKZ6_FIBSS (db=UNIREF evalue=5.0e-146 bit_score=521.0 identity=51.36 coverage=96.1759082217973)
pyruvate carboxyltransferase
pyruvate carboxyltransferase
AIPM_HOMOCIT_SYNTH_1 (db=PatternScan db_id=PS00815 from=16 to=32 evalue=0.0 interpro_id=IPR002034 interpro_description=Alpha-isopropylmalate/homocitrate synthase, conserved site GO=Biological Process: carboxylic acid metabolic process (GO:0019752), Molecular Function: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer (GO:0046912))
ACD20_10_110

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comp(112314..114128)
DNA (1815bp) protein (605aa)
peptidase U32 family protein
peptidase U32 family protein
Peptidase U32 n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC99_TOLAT (db=UNIREF evalue=1.0e-166 bit_score=590.0 identity=47.69 coverage=99.1735537190083)
PEPTIDASE_U32 (db=PatternScan db_id=PS01276 from=157 to=175 evalue=0.0 interpro_id=IPR001539 interpro_description=Peptidase U32 GO=Biological Process: proteolysis (GO:0006508), Molecular Function: peptidase activity (GO:0008233))
ACD20_10_111

Not on your lists

comp(114336..115769)
DNA (1434bp) protein (478aa)
multi-sensor hybrid histidine kinase
seg (db=Seg db_id=seg from=430 to=438)
coiled-coil (db=Coil db_id=coil from=23 to=51 evalue=NA)
seg (db=Seg db_id=seg from=30 to=44)
ACD20_10_112

Not on your lists

116238..118418
DNA (2181bp) protein (727aa)
seg (db=Seg db_id=seg from=134 to=149)
seg (db=Seg db_id=seg from=451 to=465)
seg (db=Seg db_id=seg from=673 to=681)
seg (db=Seg db_id=seg from=702 to=714)
ACD20_10_113

Not on your lists

118735..119835
DNA (1101bp) protein (367aa)
chaperone DnaJ domain-containing protein
seg (db=Seg db_id=seg from=235 to=247)
DNAJ/HSP40 (db=HMMPanther db_id=PTHR11821 from=1 to=337 evalue=1.2e-94 interpro_id=IPR015609 interpro_description=Molecular chaperone, heat shock protein, Hsp40, DnaJ)
CHAPERONE PROTEIN DNAJ (db=HMMPanther db_id=PTHR11821:SF79 from=1 to=337 evalue=1.2e-94)
ACD20_10_114

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119822..120583
DNA (762bp) protein (254aa)
hypothetical protein
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=15 to=248 evalue=1.6e-18)
Radical_SAM (db=HMMPfam db_id=PF04055 from=30 to=198 evalue=9.7e-16 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis prote
ACD20_10_115

Not on your lists

comp(120584..121153)
DNA (570bp) protein (190aa)
Tryptophan repressor binding protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U5L8_9PROT (db=UNIREF evalue=6.0e-57 bit_score=223.0 identity=53.72 coverage=98.4210526315789)
putative tryptophan repressor-binding protein wrbA
FLAVODOXIN (db=PatternScan db_id=PS00201 from=6 to=22 evalue=0.0 interpro_id=IPR001226 interpro_description=Flavodoxin, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: FMN binding (GO:0010181))
no description (db=Gene3D db_id=G3DSA:3.40.50.360 from=3 to=186 evalue=5.8e-51)
ACD20_10_116

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121341..121610
DNA (270bp) protein (90aa)
121341..121610 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03870.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_117

Not on your lists

comp(121721..122578)
DNA (858bp) protein (286aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=11 to=33)
seg (db=Seg db_id=seg from=254 to=272)
seg (db=Seg db_id=seg from=15 to=28)
Uncharacterized protein {ECO:0000313|EMBL:EKE03871.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_118

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123046..123246
DNA (201bp) protein (67aa)
123046..123246 + (rbs_motif=GGA/GAG/AGG rbs_spacer=11-12bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03872.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_119
unknown

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123227..123286
DNA (60bp) protein (20aa)
123227..123286 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Displaying items 91-119 of 119 in total

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