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ACD20_10

Alias: ACD20_20526.123248.14

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Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_10_1

Not on your lists

204..380
DNA (177bp) protein (59aa)
204..380 + (rbs_motif=4Base/6BMM rbs_spacer=13-15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03967.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_2

Not on your lists

499..777
DNA (279bp) protein (93aa)
plasmid maintenance system killer protein
Plasmid_killer (db=HMMPfam db_id=PF05015 from=1 to=92 evalue=1.9e-26 interpro_id=IPR007711 interpro_description=Plasmid maintenance system killer)
RelE-like (db=superfamily db_id=SSF143011 from=1 to=92 evalue=1.3e-14)
Uncharacterized protein {ECO:0000313|EMBL:EKE03968.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_3

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813..1094
DNA (282bp) protein (94aa)
plasmid maintenance system antidote protein
antidote_HigA: addiction module antidot (db=HMMTigr db_id=TIGR02607 from=3 to=82 evalue=8.9e-44 interpro_id=IPR013430 interpro_description=Addiction module antidote protein, HigA GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=3 to=69 evalue=1.2e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
HTH_3 (db=HMMPfam db_id=PF01381 from=18 to=66 evalue=1.5e-12 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD20_10_4

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2207..3811
DNA (1605bp) protein (535aa)
sulfite reductase (ferredoxin) (EC:1.8.7.1)
sulfite reductase (ferredoxin) (EC:1.8.7.1)
Sulfite reductase (Ferredoxin) n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TTV9_ALKMQ (db=UNIREF evalue=7.0e-136 bit_score=488.0 identity=48.57 coverage=96.6355140186916)
seg (db=Seg db_id=seg from=330 to=344)
Sulfite to H2S Jill Banfield (11/15/12)
ACD20_10_5

Not on your lists

3840..4466
DNA (627bp) protein (209aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE03971.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_C00010G00005,ACD20_20526.123248.14G0005,ACD20_20526.123248.14_5 id=18014 tax=ACD20 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_10_6

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4467..5948
DNA (1482bp) protein (494aa)
anion transporter rbh
anion transporter rbh
Anion transporter n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TTV7_ALKMQ (db=UNIREF evalue=1.0e-146 bit_score=523.0 identity=60.43 coverage=94.9392712550607)
transmembrane_regions (db=TMHMM db_id=tmhmm from=347 to=369)
Possiby sulfate transporter Jill Banfield (11/15/12)
ACD20_10_7

Not on your lists

5967..6596
DNA (630bp) protein (210aa)
adenylylsulfate kinase ApsK
apsK: adenylylsulfate kinase (db=HMMTigr db_id=TIGR00455 from=11 to=194 evalue=5.5e-107 interpro_id=IPR002891 interpro_description=Adenylylsulphate kinase, C-terminal GO=Biological Process: sulfate assimilation (GO:0000103), Molecular Function: ATP binding (GO:0005524), Molecular Function: kinase activity (GO:0016301), Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772))
ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERASE (db=HMMPanther db_id=PTHR11055 from=1 to=207 evalue=1.0e-99)
ADENYLSULFATE KINASE (db=HMMPanther db_id=PTHR11055:SF1 from=1 to=207 evalue=1.0e-99)
APS to PAPS Jill Banfield (11/15/12)
ACD20_10_8

Not on your lists

6583..8256
DNA (1674bp) protein (558aa)
adenylylsulfate reductase subunit alpha (EC:1.8.99.2) rbh
adenylylsulfate reductase subunit alpha (EC:1.8.99.2) rbh
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TTV5_ALKMQ (db=UNIREF evalue=0.0 bit_score=803.0 identity=67.68 coverage=99.4623655913979)
coiled-coil (db=Coil db_id=coil from=458 to=479 evalue=NA)
not fumarate reductase, but sulfate assimilation kelly wrighton (11/15/12)
APS to sulfite Jill Banfield (11/15/12)
ACD20_10_9

Not on your lists

8246..8560
DNA (315bp) protein (105aa)
ferredoxin
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=10 to=21 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
4Fe-4S ferredoxins (db=superfamily db_id=SSF54862 from=2 to=58 evalue=4.3e-16)
no description (db=Gene3D db_id=G3DSA:3.30.70.20 from=1 to=62 evalue=1.3e-11)
ACD20_10_10

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8579..9379
DNA (801bp) protein (267aa)
cysD; sulfate adenylyltransferase subunit 2 (EC:2.7.7.4) rbh
cysD; sulfate adenylyltransferase subunit 2 (EC:2.7.7.4) rbh
Phosphoadenosine phosphosulfate reductase n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5R8Q2_9FIRM (db=UNIREF evalue=1.0e-129 bit_score=465.0 identity=79.32 coverage=99.250936329588)
coiled-coil (db=Coil db_id=coil from=222 to=243 evalue=NA)
Sulfate to APS Jill Banfield (11/15/12)
ACD20_10_11

Not on your lists

9538..11379
DNA (1842bp) protein (614aa)
sulfate adenylyltransferase, large subunit rbh
sulfate adenylyltransferase, large subunit rbh
CysN n=2 Tax=Clostridium kluyveri RepID=A5N956_CLOK5 (db=UNIREF evalue=0.0 bit_score=858.0 identity=67.6 coverage=98.8599348534202)
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=60 to=75 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
ACD20_10_12

Not on your lists

comp(11376..11909)
DNA (534bp) protein (178aa)
DtxR family iron (metal) dependent repressor
seg (db=Seg db_id=seg from=89 to=103)
no description (db=HMMSmart db_id=SM00529 from=29 to=128 evalue=2.8e-30)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=6 to=78 evalue=5.4e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
ACD20_10_13

Not on your lists

12333..13427
DNA (1095bp) protein (365aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61) rbh
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61) rbh
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAV8_ELUMP (db=UNIREF evalue=2.0e-107 bit_score=392.0 identity=54.52 coverage=96.4383561643836)
seg (db=Seg db_id=seg from=282 to=297)
ACD20_10_14

Not on your lists

13438..14718
DNA (1281bp) protein (427aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49)
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J6X5_9BACL (db=UNIREF evalue=4.0e-164 bit_score=581.0 identity=72.21 coverage=94.1451990632319)
seg (db=Seg db_id=seg from=333 to=354)
ACD20_10_15

Not on your lists

14843..15253
DNA (411bp) protein (137aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
Uncharacterized protein {ECO:0000313|EMBL:EKE03951.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_16

Not on your lists

15337..15738
DNA (402bp) protein (134aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=77 to=86)
FixH (db=HMMPfam db_id=PF05751 from=33 to=121 evalue=0.00016 interpro_id=IPR008620 interpro_description=FixH)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
ACD20_10_17

Not on your lists

15772..17040
DNA (1269bp) protein (423aa)
chemiosmotic efflux system B protein C
seg (db=Seg db_id=seg from=45 to=56)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
coiled-coil (db=Coil db_id=coil from=303 to=324 evalue=NA)
ACD20_10_18

Not on your lists

17037..18275
DNA (1239bp) protein (413aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MMD7_9BACT (db=UNIREF evalue=7.0e-83 bit_score=311.0 identity=44.98 coverage=78.2082324455206)
hypothetical protein
seg (db=Seg db_id=seg from=7 to=22)
seg (db=Seg db_id=seg from=69 to=83)
ACD20_10_19

Not on your lists

18275..21526
DNA (3252bp) protein (1084aa)
Putative cation efflux system protein silA n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MMD8_9BACT (db=UNIREF evalue=0.0 bit_score=1322.0 identity=58.67 coverage=95.479704797048)
silA; cation efflux system protein silA
silA; cation efflux system protein silA
transmembrane_regions (db=TMHMM db_id=tmhmm from=911 to=928)
ACD20_10_20

Not on your lists

21989..22717
DNA (729bp) protein (243aa)
DNA helicase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YH11_9FLAO (db=UNIREF evalue=9.0e-74 bit_score=280.0 identity=56.41 coverage=95.8847736625514)
DNA helicase
DUF2726 (db=HMMPfam db_id=PF10881 from=112 to=232 evalue=3.5e-14)
DNA2/NAM7 HELICASE FAMILY (db=HMMPanther db_id=PTHR10887 from=3 to=52 evalue=2.2e-11)
ACD20_10_21

Not on your lists

23576..23785
DNA (210bp) protein (70aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE03957.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD20_20526.123248.14G0021,ACD20_20526.123248.14_21,ACD20_C00010G00021 id=18036 tax=ACD20 species=Hyphomonas neptunium genus=Hyphomonas taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_10_22

Not on your lists

23941..25932
DNA (1992bp) protein (664aa)
hypothetical protein
hypothetical protein
ATP-dependent OLD family endonuclease n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q3I3_CATAD (db=UNIREF evalue=6.0e-114 bit_score=415.0 identity=36.39 coverage=99.5481927710843)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=421 evalue=6.1e-19)
ACD20_10_23

Not on your lists

25917..27566
DNA (1650bp) protein (550aa)
ATP-dependent DNA helicase UvrD/PcrA
ATP-dependent DNA helicase UvrD/PcrA
DNA helicase II n=1 Tax=Ralstonia pickettii 12D RepID=C6BF21_RALP1 (db=UNIREF evalue=2.0e-87 bit_score=327.0 identity=34.26 coverage=98.0)
seg (db=Seg db_id=seg from=355 to=367)
ACD20_10_24

Not on your lists

27645..30584
DNA (2940bp) protein (980aa)
DNA modification methyltransferase-related protein n=1 Tax=Raphidiopsis brookii D9 RepID=D4TSS9_9NOST (db=UNIREF evalue=0.0 bit_score=957.0 identity=51.33 coverage=96.4285714285714)
Methyltransferase domain
Methyltransferase domain
seg (db=Seg db_id=seg from=715 to=736)
ACD20_10_25

Not on your lists

30683..32755
DNA (2073bp) protein (691aa)
hypothetical protein
KAP P-loop domain protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2S3I5_HALTV (db=UNIREF evalue=9.0e-23 bit_score=112.0 identity=24.7 coverage=56.7293777134588)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
coiled-coil (db=Coil db_id=coil from=488 to=509 evalue=NA)
ACD20_10_26

Not on your lists

33191..33331
DNA (141bp) protein (47aa)
coiled-coil (db=Coil db_id=coil from=21 to=42 evalue=NA)
seg (db=Seg db_id=seg from=17 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKE03962.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_27

Not on your lists

comp(33328..33552)
DNA (225bp) protein (75aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=6 to=73 evalue=1.9e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=12 to=74 evalue=3.4e-14)
no description (db=HMMSmart db_id=SM00530 from=15 to=70 evalue=1.3e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
HTH_3 (db=HMMPfam db_id=PF01381 from=16 to=69 evalue=1.3e-13 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
ACD20_10_28

Not on your lists

33623..34645
DNA (1023bp) protein (341aa)
seg (db=Seg db_id=seg from=4 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
Uncharacterized protein {ECO:0000313|EMBL:EKE03964.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_29

Not on your lists

34670..34837
DNA (168bp) protein (56aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
Uncharacterized protein {ECO:0000313|EMBL:EKE03965.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_10_30

Not on your lists

34886..35749
DNA (864bp) protein (288aa)
34886..35749 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE03966.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 119 in total

View Taxonomy