Alias: ACD20_20526.123248.14
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD20_10_31
uncultured bacterium, Bacteria
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Not on your lists |
36369..36707
|
plasmid maintenance system killer protein
Plasmid maintenance system killer n=1 Tax=Shewanella benthica KT99 RepID=A9DJI3_9GAMM (db=UNIREF evalue=1.0e-24 bit_score=115.0 identity=58.7 coverage=80.5309734513274)
Plasmid_killer (db=HMMPfam db_id=PF05015 from=21 to=112 evalue=1.1e-28 interpro_id=IPR007711 interpro_description=Plasmid maintenance system killer)
RelE-like (db=superfamily db_id=SSF143011 from=21 to=112 evalue=2.3e-16)
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ACD20_10_32
uncultured bacterium, Bacteria
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Not on your lists |
36724..37008
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Putative integron gene cassette protein (Modular protein) n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MJA8_9BACT (db=UNIREF evalue=9.0e-27 bit_score=122.0 identity=57.61 coverage=95.7894736842105)
integron gene cassette protein
antidote_HigA: addiction module antidot (db=HMMTigr db_id=TIGR02607 from=3 to=83 evalue=4.8e-46 interpro_id=IPR013430 interpro_description=Addiction module antidote protein, HigA GO=Molecular Function: DNA binding (GO:0003677))
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=3 to=70 evalue=1.0e-15 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
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ACD20_10_33
uncultured bacterium, Bacteria
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Not on your lists |
37418..37645
|
37418..37645 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03947.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_34
uncultured bacterium, Bacteria
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Not on your lists |
37645..37989
|
Programmed cell death toxin YdcE
seg (db=Seg db_id=seg from=97 to=113)
Cell growth inhibitor/plasmid maintenance toxic component (db=superfamily db_id=SSF50118 from=4 to=112 evalue=3.4e-31 interpro_id=IPR011067 interpro_description=Plasmid maintenance toxin/Cell growth inhibitor)
PemK (db=HMMPfam db_id=PF02452 from=5 to=111 evalue=1.0e-26 interpro_id=IPR003477 interpro_description=PemK-like protein GO=Molecular Function: DNA binding (GO:0003677))
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ACD20_10_35
uncultured bacterium, Bacteria
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Not on your lists |
comp(38791..39831)
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Electron transfer flavoprotein, alpha subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPI6_9FIRM (db=UNIREF evalue=7.0e-98 bit_score=360.0 identity=53.27 coverage=94.8126801152738)
electron transfer flavoprotein subunit alpha/beta
electron transfer flavoprotein subunit alpha/beta
ETF_ALPHA (db=PatternScan db_id=PS00696 from=281 to=307 evalue=0.0 interpro_id=IPR018206 interpro_description=Electron transfer flavoprotein, alpha subunit, C-terminal, conserved site)
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cytoplasmic, not membrane bound
kelly wrighton
(11/15/12)
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ACD20_10_36
uncultured bacterium, Bacteria
|
Not on your lists |
comp(39847..40641)
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Electron transfer flavoprotein beta-subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPI5_9FIRM (db=UNIREF evalue=1.0e-74 bit_score=282.0 identity=53.79 coverage=98.1132075471698)
Electron transfer flavoprotein alpha/beta-subunit
ETF_BETA (db=PatternScan db_id=PS01065 from=158 to=178 evalue=0.0 interpro_id=IPR000049 interpro_description=Electron transfer flavoprotein, beta-subunit, conserved site GO=Molecular Function: electron carrier activity (GO:0009055))
Electron transfer flavoprotein, beta subunit (db=HMMPIR db_id=PIRSF000090 from=1 to=263 evalue=4.2e-106 interpro_id=IPR012255 interpro_description=Electron transfer flavoprotein, beta subunit GO=Molecular Function: electron carrier activity (GO:0009055))
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cytoplasmic
kelly wrighton
(11/15/12)
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ACD20_10_37
uncultured bacterium, Bacteria
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Not on your lists |
41042..41248
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41042..41248 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03942.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_38
uncultured bacterium, Bacteria
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Not on your lists |
41661..42668
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hypothetical protein
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=14 to=334 evalue=1.0e-19 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
hypothetical protein alias=ACD20_20526.123248.14G0038,ACD20_20526.123248.14_38,ACD20_C00010G00038 id=18034 tax=ACD20 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03943.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_39
uncultured bacterium, Bacteria
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Not on your lists |
42824..43132
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42824..43132 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03944.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_40
uncultured bacterium, Bacteria
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Not on your lists |
43250..45244
|
hypothetical protein
rbh
hypothetical protein
rbh
Conserved hypothetical cytosolic protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYV2_RUBXD (db=UNIREF evalue=1.0e-95 bit_score=354.0 identity=33.62 coverage=96.0902255639098)
seg (db=Seg db_id=seg from=236 to=247)
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ACD20_10_41
uncultured bacterium, Bacteria
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Not on your lists |
comp(45259..45669)
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coiled-coil (db=Coil db_id=coil from=31 to=70 evalue=NA)
seg (db=Seg db_id=seg from=42 to=54)
Uncharacterized protein {ECO:0000313|EMBL:EKE03935.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_42
uncultured bacterium, Bacteria
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Not on your lists |
45852..46988
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DNA repair exonuclease
seg (db=Seg db_id=seg from=344 to=356)
no description (db=Gene3D db_id=G3DSA:3.60.21.10 from=1 to=321 evalue=2.0e-36)
Metallo-dependent phosphatases (db=superfamily db_id=SSF56300 from=1 to=300 evalue=2.6e-35)
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ACD20_10_43
uncultured bacterium, Bacteria
|
Not on your lists |
47107..49560
|
SMC domain-containing protein
SMC domain-containing protein
Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6F7_GEMAT (db=UNIREF evalue=3.0e-111 bit_score=406.0 identity=30.99 coverage=97.4327628361858)
coiled-coil (db=Coil db_id=coil from=604 to=639 evalue=NA)
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ACD20_10_44
uncultured bacterium, Bacteria
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Not on your lists |
comp(49833..51080)
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Tyrosyl-tRNA synthetase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=SYY_CARHZ (db=UNIREF evalue=4.0e-116 bit_score=421.0 identity=54.86 coverage=94.4711538461538)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
seg (db=Seg db_id=seg from=2 to=19)
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ACD20_10_45
uncultured bacterium, Bacteria
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Not on your lists |
comp(51089..51559)
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tryptophan synthase beta chain
SER/THR DEHYDRATASE, TRP SYNTHASE (db=HMMPanther db_id=PTHR10314 from=1 to=156 evalue=2.1e-71)
TRYPTOPHAN SYNTHASE BETA CHAIN (db=HMMPanther db_id=PTHR10314:SF3 from=1 to=156 evalue=2.1e-71)
no description (db=Gene3D db_id=G3DSA:3.40.50.1100 from=1 to=156 evalue=1.3e-56)
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ACD20_10_46
GWF2_Melainabacteria_32_7_curated, Melainabacteria, Bacteria
|
Not on your lists |
comp(51535..52800)
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glucose sorbosone dehydrogenase
rbh
glucose sorbosone dehydrogenase
rbh
Glucose sorbosone dehydrogenase n=1 Tax=bacterium Ellin514 RepID=B9XME6_9BACT (db=UNIREF evalue=7.0e-119 bit_score=431.0 identity=52.81 coverage=92.1800947867299)
no description (db=Gene3D db_id=G3DSA:2.120.10.30 from=55 to=396 evalue=2.2e-61 interpro_id=IPR011042 interpro_description=Six-bladed beta-propeller, TolB-like)
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membrane associated
kelly wrighton
(11/15/12)
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ACD20_10_47
uncultured bacterium, Bacteria
|
Not on your lists |
comp(52815..53588)
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hypothetical protein
Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J763_9FLAO (db=UNIREF evalue=7.0e-38 bit_score=160.0 identity=50.26 coverage=75.1937984496124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
seg (db=Seg db_id=seg from=143 to=156)
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ACD20_10_48
uncultured bacterium, Bacteria
|
Not on your lists |
comp(53676..54863)
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major facilitator superfamily transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=363 to=385)
transmembrane_regions (db=TMHMM db_id=tmhmm from=240 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=208 to=230)
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ACD20_10_49
uncultured bacterium, Bacteria
|
Not on your lists |
55068..55934
|
Formyltetrahydrofolate deformylase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWY5_RHORT (db=UNIREF evalue=3.0e-102 bit_score=375.0 identity=57.24 coverage=97.5778546712803)
Formyltetrahydrofolate deformylase (EC:3.5.1.10)
rbh
Formyltetrahydrofolate deformylase (EC:3.5.1.10)
rbh
Formyltetrahydrofolate deformylase (db=HMMPIR db_id=PIRSF036480 from=1 to=288 evalue=5.1e-149 interpro_id=IPR004810 interpro_description=Formyltetrahydrofolate deformylase GO=Biological Process: 'de novo' IMP biosynthetic process (GO:0006189), Molecular Function: formyltetrahydrofolate deformylase activity (GO:0008864))
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ACD20_10_50
uncultured bacterium, Bacteria
|
Not on your lists |
comp(55935..56111)
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55935..56111 - (rbs_motif=GGAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03919.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_51
uncultured bacterium, Bacteria
|
Not on your lists |
comp(56507..57178)
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two component transcriptional regulator, LuxR family
seg (db=Seg db_id=seg from=30 to=44)
CheY-like (db=superfamily db_id=SSF52172 from=1 to=132 evalue=1.4e-32 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=7 to=120 evalue=6.8e-32 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD20_10_52
uncultured bacterium, Bacteria
|
Not on your lists |
comp(57691..58344)
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hypothetical protein
UPF0153 (db=HMMPfam db_id=PF03692 from=4 to=127 evalue=6.0e-08 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
hypothetical protein; K06940 alias=ACD20_20526.123248.14G0052,ACD20_20526.123248.14_52,ACD20_C00010G00052 id=18049 tax=ACD20 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03921.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD20_10_53
uncultured bacterium, Bacteria
|
Not on your lists |
comp(58410..59471)
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hypothetical protein
hypothetical protein
Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JCD1_NITOC (db=UNIREF evalue=3.0e-84 bit_score=315.0 identity=56.18 coverage=92.9378531073446)
seg (db=Seg db_id=seg from=127 to=141)
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ACD20_10_54
uncultured bacterium, Bacteria
|
Not on your lists |
comp(59602..59943)
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hypothetical protein
seg (db=Seg db_id=seg from=96 to=110)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=110)
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ACD20_10_55
uncultured bacterium, Bacteria
|
Not on your lists |
comp(60199..60840)
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marC; MarC integral membrane family protein
seg (db=Seg db_id=seg from=49 to=60)
seg (db=Seg db_id=seg from=83 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
|
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ACD20_10_56
uncultured bacterium, Bacteria
|
Not on your lists |
comp(61221..61973)
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NADH ubiquinone oxidoreductase, 20 kDa subunit n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB3_RHOFD (db=UNIREF evalue=9.0e-67 bit_score=256.0 identity=49.02 coverage=98.406374501992)
NADH ubiquinone oxidoreductase, 20 kDa subunit
4FE4S_FER_1 (db=PatternScan db_id=PS00198 from=39 to=50 evalue=0.0 interpro_id=IPR017900 interpro_description=4Fe-4S ferredoxin, iron-sulphur binding, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
FORMATE HYDROGENLYASE 7 (db=HMMPanther db_id=PTHR11995:SF3 from=116 to=245 evalue=1.7e-37)
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possible Ni,Fe-hydrogenase III small subunit, hydrogenase-3, six subunit. psort membrane. Has cystein motiff for cordination 4FeS. RnfC?
kelly wrighton
(11/15/12)
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ACD20_10_57
uncultured bacterium, Bacteria
|
Not on your lists |
comp(62090..63586)
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NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Anaeromyxobacter RepID=B4UDX0_ANASK (db=UNIREF evalue=2.0e-122 bit_score=442.0 identity=45.73 coverage=98.1963927855711)
NADH-ubiquinone oxidoreductase subunit 49kDa
NADH-ubiquinone oxidoreductase subunit 49kDa
seg (db=Seg db_id=seg from=61 to=75)
|
No active site confirmation. Large subunit, NiFeSe hydrogenase. psort cytoplasmic.RNF? has cysteine motiff for cordination 4FeS
kelly wrighton
(11/15/12)
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ACD20_10_58
uncultured bacterium, Bacteria
|
Not on your lists |
comp(63607..65043)
|
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit
transmembrane_regions (db=TMHMM db_id=tmhmm from=233 to=252)
transmembrane_regions (db=TMHMM db_id=tmhmm from=302 to=324)
transmembrane_regions (db=TMHMM db_id=tmhmm from=363 to=385)
|
hyfF six subunit. psort membrane, 13 helices
kelly wrighton
(11/15/12)
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ACD20_10_59
uncultured bacterium, Bacteria
|
Not on your lists |
comp(65033..65686)
|
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=170 to=192)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
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hyfE, six subunit. psort predicted membrane bound. 6 helices
kelly wrighton
(11/15/12)
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ACD20_10_60
uncultured bacterium, Bacteria
|
Not on your lists |
comp(65693..66613)
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formate hydrogenlyase subunit 4-like protein
NAD-dependent dehydrogenase subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AKV1_PELPD (db=UNIREF evalue=1.0e-51 bit_score=207.0 identity=46.01 coverage=84.0390879478827)
seg (db=Seg db_id=seg from=4 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=280 to=302)
|
hydrogenase-3, six subunit. psort predicted membrane bound. 8 helices. like nuoH~ proton motive force
kelly wrighton
(11/15/12)
|