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ACD20_53

Alias: ACD20_6299.103852.14

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Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD20_53_1

Not on your lists

323..511
DNA (189bp) protein (63aa)
323..511 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02674.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_2

Not on your lists

639..1259
DNA (621bp) protein (207aa)
639..1259 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02675.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_3

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comp(1256..2308)
DNA (1053bp) protein (351aa)
Naringenin-chalcone synthase n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XIK8_9FLAO (db=UNIREF evalue=5.0e-105 bit_score=384.0 identity=50.58 coverage=98.005698005698)
3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III
3-oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Type III polyketide synthase (db=HMMPIR db_id=PIRSF000451 from=1 to=350 evalue=1.7e-68 interpro_id=IPR011141 interpro_description=Polyketide synthase, type III GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747))
ACD20_53_4

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2465..2986
DNA (522bp) protein (174aa)
ribonuclease T
transmembrane_regions (db=TMHMM db_id=tmhmm from=132 to=154)
transmembrane_regions (db=TMHMM db_id=tmhmm from=70 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
ACD20_53_5

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3092..3751
DNA (660bp) protein (220aa)
seg (db=Seg db_id=seg from=193 to=204)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=9 to=213 evalue=1.0e-21 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=125 to=215 evalue=2.6e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=162 to=211 evalue=2.6e-13 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD20_53_6

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3939..5846
DNA (1908bp) protein (636aa)
integral membrane sensor signal transduction histidine kinase
Sensor protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IKP9_9CLOT (db=UNIREF evalue=6.0e-36 bit_score=156.0 identity=32.67 coverage=43.2389937106918)
seg (db=Seg db_id=seg from=11 to=30)
seg (db=Seg db_id=seg from=73 to=86)
ACD20_53_7

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5857..6546
DNA (690bp) protein (230aa)
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=171 to=198 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565))
CheY-like (db=superfamily db_id=SSF52172 from=5 to=135 evalue=2.7e-31 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=HMMSmart db_id=SM00448 from=7 to=120 evalue=4.2e-30 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD20_53_8

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7110..8210
DNA (1101bp) protein (367aa)
type IV pilus assembly protein PilM
pilM: type IV pilus assembly protein PilM (db=HMMTigr db_id=TIGR01175 from=8 to=364 evalue=6.8e-45 interpro_id=IPR005883 interpro_description=Type IV pilus assembly protein PilM)
Competence_A (db=HMMPfam db_id=PF11104 from=44 to=181 evalue=1.6e-22)
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=9 to=182 evalue=3.8e-07)
ACD20_53_9

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8207..8860
DNA (654bp) protein (218aa)
seg (db=Seg db_id=seg from=127 to=140)
seg (db=Seg db_id=seg from=88 to=102)
seg (db=Seg db_id=seg from=42 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
ACD20_53_10

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8923..9603
DNA (681bp) protein (227aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=96 to=108)
coiled-coil (db=Coil db_id=coil from=33 to=81 evalue=NA)
PilO (db=HMMPfam db_id=PF04350 from=140 to=208 evalue=1.8e-05)
ACD20_53_11

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9603..10358
DNA (756bp) protein (252aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=46)
seg (db=Seg db_id=seg from=27 to=36)
seg (db=Seg db_id=seg from=86 to=100)
seg (db=Seg db_id=seg from=104 to=117)
ACD20_53_12

Not on your lists

10388..12025
DNA (1638bp) protein (546aa)
pilQ; type IV pilus assembly protein PilQ
seg (db=Seg db_id=seg from=187 to=205)
Secretin (db=HMMPfam db_id=PF00263 from=373 to=540 evalue=1.6e-38 interpro_id=IPR004846 interpro_description=Type II/III secretion system GO=Biological Process: protein secretion (GO:0009306))
BCTERIALGSPD (db=FPrintScan db_id=PR00811 from=299 to=309 evalue=4.4e-17)
ACD20_53_13

Not on your lists

12164..13039
DNA (876bp) protein (292aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=NC10 bacterium 'Dutch sediment' RepID=D5MF95_9BACT (db=UNIREF evalue=5.0e-77 bit_score=291.0 identity=47.42 coverage=97.6027397260274)
fadh2: 5,10-methylenetetrahydrofolate reduct (db=HMMTigr db_id=TIGR00676 from=14 to=291 evalue=1.2e-132 interpro_id=IPR004620 interpro_description=5,10-methylenetetrahydrofolate reductase GO=Biological Process: methionine biosynthetic process (GO:0009086), Biological Process: oxidation reduction (GO:0055114))
MTHFR (db=HMMPfam db_id=PF02219 from=2 to=290 evalue=2.3e-95 interpro_id=IPR003171 interpro_description=Methylenetetrahydrofolate reductase GO=Molecular Function: methylenetetrahydrofolate reductase (NADPH) activity (GO:0004489), Biological Process: methionine metabolic process (GO:0006555), Biological Process: oxidation reduction (GO:0055114))
ACD20_53_14

Not on your lists

comp(13098..15689)
DNA (2592bp) protein (864aa)
DNA mismatch repair protein mutS n=1 Tax=Anabaena variabilis ATCC 29413 RepID=MUTS_ANAVT (db=UNIREF evalue=0.0 bit_score=822.0 identity=49.51 coverage=93.75)
DNA mismatch repair protein MutS
DNA mismatch repair protein MutS
mutS1: DNA mismatch repair protein MutS (db=HMMTigr db_id=TIGR01070 from=18 to=863 evalue=0.0 interpro_id=IPR005748 interpro_description=DNA mismatch repair protein MutS, type 1 GO=Molecular Function: ATP binding (GO:0005524), Biological Process: mismatch repair (GO:0006298), Molecular Function: mismatched DNA binding (GO:0030983))
ACD20_53_15

Not on your lists

15945..16592
DNA (648bp) protein (216aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKE02688.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_16

Not on your lists

comp(16728..17873)
DNA (1146bp) protein (382aa)
homoserine O-acetyltransferase (EC:2.3.1.31)
homoserine O-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W484_UNCMA (db=UNIREF evalue=5.0e-137 bit_score=491.0 identity=62.26 coverage=94.2408376963351)
homoserO_Ac_trn: homoserine O-acetylt (db=HMMTigr db_id=TIGR01392 from=24 to=377 evalue=8.5e-222 interpro_id=IPR006296 interpro_description=Homoserine O-acetyltransferase GO=Molecular Function: homoserine O-acetyltransferase activity (GO:0004414), Biological Process: methionine biosynthetic process (GO:0009086))
ACD20_53_17

Not on your lists

comp(17899..18525)
DNA (627bp) protein (209aa)
seg (db=Seg db_id=seg from=4 to=15)
UPF0153 (db=HMMPfam db_id=PF03692 from=29 to=128 evalue=1.7e-07 interpro_id=IPR005358 interpro_description=Uncharacterised protein family UPF0153)
Uncharacterized protein {ECO:0000313|EMBL:EKE02690.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_18

Not on your lists

comp(18688..19104)
DNA (417bp) protein (139aa)
18688..19104 - (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02691.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_19

Not on your lists

19351..19800
DNA (450bp) protein (150aa)
19351..19800 + (rbs_motif=GGA/GAG/AGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02692.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_20

Not on your lists

comp(19805..21082)
DNA (1278bp) protein (426aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49)
seg (db=Seg db_id=seg from=403 to=416)
CYS_MET_METAB_PP (db=PatternScan db_id=PS00868 from=196 to=210 evalue=0.0 interpro_id=IPR000277 interpro_description=Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: pyridoxal phosphate binding (GO:0030170))
OAH_OAS_sulfhy: O-acetylhomoserine ami (db=HMMTigr db_id=TIGR01326 from=2 to=420 evalue=2.4e-302 interpro_id=IPR006235 interpro_description=O-acetylhomoserine/O-acetylserine sulfhydrylase GO=Biological Process: cellular amino acid metabolic process (GO:0006520), Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD20_53_21

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comp(21538..22071)
DNA (534bp) protein (178aa)
hypothetical protein
Transposase IS200-like (db=superfamily db_id=SSF143422 from=1 to=137 evalue=1.0e-28)
Transposase_17 (db=HMMPfam db_id=PF01797 from=10 to=130 evalue=1.8e-14 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
hypothetical protein; K07491 putative transposase alias=ACD20_C00053G00021,ACD20_6299.103852.14G0021,ACD20_6299.103852.14_21 id=19174 tax=ACD20 species=Cyanothece sp. PCC 8801 genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
ACD20_53_22

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22216..22515
DNA (300bp) protein (100aa)
22216..22515 + (rbs_motif=AGGA rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02695.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_23

Not on your lists


comp(22537..23256)
DNA (720bp) protein (240aa)
ribonuclease PH (EC:2.7.7.56)
seg (db=Seg db_id=seg from=134 to=152)
RIBONUCLEASE_PH (db=PatternScan db_id=PS01277 from=117 to=129 evalue=0.0 interpro_id=IPR018336 interpro_description=Ribonuclease PH, conserved site)
RNasePH: ribonuclease PH (db=HMMTigr db_id=TIGR01966 from=4 to=238 evalue=2.5e-134 interpro_id=IPR002381 interpro_description=Ribonuclease phosphorolytic, bacterial-type GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: tRNA-specific ribonuclease activity (GO:0004549), Biological Process: tRNA processing (GO:0008033))
ACD20_53_24

Not on your lists

23467..25041
DNA (1575bp) protein (525aa)
metG; putative methionyl-tRNA synthetase (EC:6.1.1.10)
metG; putative methionyl-tRNA synthetase (EC:6.1.1.10)
Methionyl-tRNA synthetase n=3 Tax=Clostridium thermocellum RepID=A3DH74_CLOTH (db=UNIREF evalue=8.0e-123 bit_score=444.0 identity=46.05 coverage=97.1428571428571)
seg (db=Seg db_id=seg from=348 to=366)
ACD20_53_25

Not on your lists

25063..25842
DNA (780bp) protein (260aa)
metal-dependent DNA hydrolase of TatD family
YabD n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850805 (db=UNIREF evalue=2.0e-74 bit_score=282.0 identity=54.94 coverage=96.9230769230769)
seg (db=Seg db_id=seg from=186 to=199)
TATD_1 (db=PatternScan db_id=PS01137 from=7 to=15 evalue=0.0 interpro_id=IPR018228 interpro_description=Deoxyribonuclease, TatD-related, conserved site GO=Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888))
ACD20_53_26

Not on your lists

25970..26338
DNA (369bp) protein (123aa)
25970..26338 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE02699.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_27

Not on your lists

comp(26417..26911)
DNA (495bp) protein (165aa)
seg (db=Seg db_id=seg from=20 to=35)
Uncharacterized protein {ECO:0000313|EMBL:EKE02700.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD20_53_28

Not on your lists

27276..28763
DNA (1488bp) protein (496aa)
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=MURC_BREBN (db=UNIREF evalue=3.0e-99 bit_score=366.0 identity=39.53 coverage=92.1370967741936)
murC: UDP-N-acetylmuramate--alanine ligase (db=HMMTigr db_id=TIGR01082 from=24 to=484 evalue=3.3e-181 interpro_id=IPR005758 interpro_description=UDP-N-acetylmuramate-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramate-L-alanine ligase activity (GO:0008763), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: peptidogl
ACD20_53_29

Not on your lists

28760..29698
DNA (939bp) protein (313aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase MurB (EC:1.3.1.98)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MAQ9_9FIRM (db=UNIREF evalue=8.0e-45 bit_score=184.0 identity=40.28 coverage=88.4984025559105)
seg (db=Seg db_id=seg from=39 to=56)
murB: UDP-N-acetylenolpyruvoylglucosamine re (db=HMMTigr db_id=TIGR00179 from=15 to=296 evalue=6.6e-67 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: oxidation reduction (GO:0055114))
ACD20_53_30

Not on your lists

29674..30627
DNA (954bp) protein (318aa)
D-alanine--D-alanine ligase B (EC:6.3.2.4)
seg (db=Seg db_id=seg from=131 to=142)
coiled-coil (db=Coil db_id=coil from=161 to=182 evalue=NA)
DALA_DALA_LIGASE_1 (db=PatternScan db_id=PS00843 from=75 to=86 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
Displaying items 1-30 of 86 in total

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