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13_1_40cm_4_scaffold_2495

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2495_1
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..595)
DNA (594bp) protein (198aa)
putative RNA methylase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
ribosomal protein L11 methylase id=14430730 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
RNA methylase family protein
13_1_40cm_4_scaffold_2495_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(607..1521)
DNA (915bp) protein (305aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RpoD family RNA polymerase sigma factor
13_1_40cm_4_scaffold_2495_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1514..2326)
DNA (813bp) protein (271aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_1_40cm_4_scaffold_2495_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2323..2622)
DNA (300bp) protein (100aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
13_1_40cm_4_scaffold_2495_trna_2
unknown

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comp(2699..2772)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_2495_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2797..3447)
DNA (651bp) protein (217aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-L-isoaspartate O-methyltransferase
13_1_40cm_4_scaffold_2495_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3451..4221)
DNA (771bp) protein (257aa)
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=GWA2_Rokubacteria_73_35_curated
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
surE; 5'(3')-nucleotidase/polyphosphatase
13_1_40cm_4_scaffold_2495_trna_1
unknown

Not on your lists

comp(4238..4311)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_2495_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4351..4704)
DNA (354bp) protein (118aa)
Regulatory protein MerR id=4555202 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
regulatory protein MerR Tax=GWA2_Rokubacteria_70_23_curated
regulatory protein MerR
13_1_40cm_4_scaffold_2495_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4701..4979)
DNA (279bp) protein (93aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integration host factor subunit alpha
13_1_40cm_4_scaffold_2495_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4976..5317)
DNA (342bp) protein (114aa)
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein id=14626512 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein Tax=CSP1_6_Rokubacteria
CutA1 divalent ion tolerance protein
13_1_40cm_4_scaffold_2495_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5314..6234)
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LPXTG-motif cell wall anchor domain-containing protein
13_1_40cm_4_scaffold_2495_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6264..7004)
DNA (741bp) protein (247aa)
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_2495_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7064..8410)
DNA (1347bp) protein (449aa)
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein; K03977 GTP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
GTP-binding protein Der
13_1_40cm_4_scaffold_2495_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8447..8947)
DNA (501bp) protein (167aa)
PDZ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 15 items

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